MS013825 (gene) Bitter gourd (TR) v1

Overview


Name	MS013825
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	rhomboid-like protein 15
Location	scaffold607: 24439 .. 24627 (-)
RNA-Seq Expression	MS013825
Synteny	MS013825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGGATTGCCAACAAGGGTGGGGCAATGGTGGGATGGCATTCCGTTCTTTACTTCAGCTGTTGTGATAATCTGTGGAACCATTTACTTGGTCTGTCTCTTGGTTGGATATGACTCATTTGCCGAAATATGTTTCTTACCTGCGGCAATCCTATCAAAGTTTCAAGGTACATTTCTCTTTTTTCAAATA

mRNA sequence

GCAGGATTGCCAACAAGGGTGGGGCAATGGTGGGATGGCATTCCGTTCTTTACTTCAGCTGTTGTGATAATCTGTGGAACCATTTACTTGGTCTGTCTCTTGGTTGGATATGACTCATTTGCCGAAATATGTTTCTTACCTGCGGCAATCCTATCAAAGTTTCAAGGTACATTTCTCTTTTTTCAAATA

Coding sequence (CDS)

GCAGGATTGCCAACAAGGGTGGGGCAATGGTGGGATGGCATTCCGTTCTTTACTTCAGCTGTTGTGATAATCTGTGGAACCATTTACTTGGTCTGTCTCTTGGTTGGATATGACTCATTTGCCGAAATATGTTTCTTACCTGCGGCAATCCTATCAAAGTTTCAAGGTACATTTCTCTTTTTTCAAATA

Protein sequence

AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLFFQI

Homology

[Close]

BLAST of MS013825 vs. NCBI nr
Match: XP_022156184.1 (rhomboid-like protein 15 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
          AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQ   +F
Sbjct: 9  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQVYRIF 68

Query: 61 FQI 64
            +
Sbjct: 69 TSV 71

[Close]

BLAST of MS013825 vs. NCBI nr
Match: KAG6603502.1 (Rhomboid-like protein 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1   AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
           AGLPTRVGQWW+GIPFFTSA++IICGTIYLVCLLVGYDSF EICFLP AILS+FQ   +F
Sbjct: 124 AGLPTRVGQWWEGIPFFTSAIMIICGTIYLVCLLVGYDSFVEICFLPVAILSQFQVYRIF 183

Query: 61  FQI 64
             +
Sbjct: 184 TSV 186

[Close]

BLAST of MS013825 vs. NCBI nr
Match: KAG7033682.1 (Rhomboid-like protein 15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
          AGLPTRVGQWW+GIPFFTSA++IICGTIYLVCLLVGYDSF EICFLP AILS+FQ   +F
Sbjct: 9  AGLPTRVGQWWEGIPFFTSAIMIICGTIYLVCLLVGYDSFVEICFLPVAILSQFQVYRIF 68

Query: 61 FQI 64
            +
Sbjct: 69 TSV 71

[Close]

BLAST of MS013825 vs. NCBI nr
Match: XP_023544999.1 (rhomboid-like protein 15 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
          AGLPTRVGQWW+GIPFFTSA++IICGTIYLVCLLVGYDSF EICFLP AILS+FQ   +F
Sbjct: 9  AGLPTRVGQWWEGIPFFTSAIMIICGTIYLVCLLVGYDSFVEICFLPVAILSQFQVYRIF 68

Query: 61 FQI 64
            +
Sbjct: 69 TSV 71

[Close]

BLAST of MS013825 vs. NCBI nr
Match: KAF8398036.1 (hypothetical protein HHK36_016962 [Tetracentron sinense])

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 46/54 (85.19%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 2   GLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQ 56
           GLPTR+GQWW+G+PFFTSAVVI+CGTIYLVCLLVGYDSF EICFLP+A++SKFQ
Sbjct: 230 GLPTRLGQWWEGVPFFTSAVVILCGTIYLVCLLVGYDSFVEICFLPSAVISKFQ 283

[Close]

BLAST of MS013825 vs. ExPASy Swiss-Prot
Match: Q8LB17 (Rhomboid-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=RBL15 PE=1 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 8.6e-19
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQ 56
          AG+ TRVGQWW+ IPF TS+VV++CG IYL+CLL GYD+F E+CFLP+AI+S+FQ
Sbjct: 9  AGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQ 63

[Close]

BLAST of MS013825 vs. ExPASy TrEMBL
Match: A0A6J1DSL3 (rhomboid-like protein 15 OS=Momordica charantia OX=3673 GN=LOC111023134 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
          AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQ   +F
Sbjct: 9  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQVYRIF 68

Query: 61 FQI 64
            +
Sbjct: 69 TSV 71

[Close]

BLAST of MS013825 vs. ExPASy TrEMBL
Match: A0A6J1ITG9 (rhomboid-like protein 15 OS=Cucurbita maxima OX=3661 GN=LOC111478257 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
          AGLPTRVGQWW+GIPFFTSA++IICGTIYLVCLLVGYDSF E+CFLP AILS+FQ   +F
Sbjct: 9  AGLPTRVGQWWEGIPFFTSAIMIICGTIYLVCLLVGYDSFVEVCFLPVAILSQFQVYRIF 68

Query: 61 FQI 64
            +
Sbjct: 69 TSV 71

[Close]

BLAST of MS013825 vs. ExPASy TrEMBL
Match: A0A1S4DUE6 (rhomboid-like protein 15 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485963 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
          AGLPTRVGQWW+GIPFFTS++++ICGTIYLVCLLVGYDSF E+CFLPAAILS FQ   +F
Sbjct: 9  AGLPTRVGQWWEGIPFFTSSIILICGTIYLVCLLVGYDSFVEVCFLPAAILSHFQVYRIF 68

Query: 61 FQI 64
            +
Sbjct: 69 TSV 71

[Close]

BLAST of MS013825 vs. ExPASy TrEMBL
Match: A0A1S4DUC3 (rhomboid-like protein 15 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485963 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
          AGLPTRVGQWW+GIPFFTS++++ICGTIYLVCLLVGYDSF E+CFLPAAILS FQ   +F
Sbjct: 9  AGLPTRVGQWWEGIPFFTSSIILICGTIYLVCLLVGYDSFVEVCFLPAAILSHFQVYRIF 68

Query: 61 FQI 64
            +
Sbjct: 69 TSV 71

[Close]

BLAST of MS013825 vs. ExPASy TrEMBL
Match: A0A1S3B586 (rhomboid-like protein 15 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485963 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQGTFLF 60
          AGLPTRVGQWW+GIPFFTS++++ICGTIYLVCLLVGYDSF E+CFLPAAILS FQ   +F
Sbjct: 9  AGLPTRVGQWWEGIPFFTSSIILICGTIYLVCLLVGYDSFVEVCFLPAAILSHFQVYRIF 68

Query: 61 FQI 64
            +
Sbjct: 69 TSV 71

[Close]

BLAST of MS013825 vs. TAIR 10
Match: AT3G58460.1 (RHOMBOID-like protein 15 )

HSP 1 Score: 93.6 bits (231), Expect = 6.1e-20
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQ 56
          AG+ TRVGQWW+ IPF TS+VV++CG IYL+CLL GYD+F E+CFLP+AI+S+FQ
Sbjct: 9  AGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQ 63

[Close]

BLAST of MS013825 vs. TAIR 10
Match: AT3G58460.2 (RHOMBOID-like protein 15 )

HSP 1 Score: 93.6 bits (231), Expect = 6.1e-20
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  AGLPTRVGQWWDGIPFFTSAVVIICGTIYLVCLLVGYDSFAEICFLPAAILSKFQ 56
          AG+ TRVGQWW+ IPF TS+VV++CG IYL+CLL GYD+F E+CFLP+AI+S+FQ
Sbjct: 32 AGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQ 86

The following BLAST results are available for this feature:

BLAST of MS013825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156184.1	1.2e-22	88.89	rhomboid-like protein 15 [Momordica charantia]	[more]
KAG6603502.1	2.6e-20	79.37	Rhomboid-like protein 15, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7033682.1	2.6e-20	79.37	Rhomboid-like protein 15 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023544999.1	2.6e-20	79.37	rhomboid-like protein 15 [Cucurbita pepo subsp. pepo]	[more]
KAF8398036.1	3.4e-20	85.19	hypothetical protein HHK36_016962 [Tetracentron sinense]	[more]

BLAST of MS013825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB17	8.6e-19	69.09	Rhomboid-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=RBL15 PE=1 SV=2	[more]

BLAST of MS013825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSL3	6.0e-23	88.89	rhomboid-like protein 15 OS=Momordica charantia OX=3673 GN=LOC111023134 PE=3 SV=...	[more]
A0A6J1ITG9	1.6e-20	77.78	rhomboid-like protein 15 OS=Cucurbita maxima OX=3661 GN=LOC111478257 PE=3 SV=1	[more]
A0A1S4DUE6	2.1e-20	76.19	rhomboid-like protein 15 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485963 PE=3...	[more]
A0A1S4DUC3	2.1e-20	76.19	rhomboid-like protein 15 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485963 PE=3...	[more]
A0A1S3B586	2.1e-20	76.19	rhomboid-like protein 15 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485963 PE=3...	[more]

BLAST of MS013825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58460.1	6.1e-20	69.09	RHOMBOID-like protein 15	[more]
AT3G58460.2	6.1e-20	69.09	RHOMBOID-like protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11009:SF25	RHOMBOID-LIKE PROTEIN 15	coord: 1..55
None	No IPR available	PANTHER	PTHR11009	DER1-LIKE PROTEIN, DERLIN	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013825.1	MS013825.1	mRNA