MS013690 (gene) Bitter gourd (TR) v1

Overview
NameMS013690
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexopolygalacturonase-like
Locationscaffold263: 197079 .. 197390 (-)
RNA-Seq ExpressionMS013690
SyntenyMS013690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACTCCTCTTGACTTTGCTACTTTGTCAAATAAAAAATATTGTCAATGGAATCAATGCAACCGAAAGGTGTGTATTAAAATCGTGTTTCGTTCATGTGCAATTTATTATTAACTCGAAAGGTATTAAAAAAAAAGATGCAAAATTGAGTTATGTATGTCAATAATGTTTGTTGTTTTTTTTTTTTTTGCTTTTTTTGTTTTTATTCATGTTCCATCAAACACTAAAGTCATCTTCAAGAATATCAAAGGTACTTCTGCTACTCCGATCACAGTCAAATTTGTTTACAACAAAAGTGTATCATGTGAGGAT

mRNA sequence

GAGACTCCTCTTGACTTTGCTACTTTGTCAAATAAAAAATATTGTCAATGGAATCAATGCAACCGAAAGGTGTGTATTAAAATCGTGTTTCGTTCATTCATCTTCAAGAATATCAAAGGTACTTCTGCTACTCCGATCACAGTCAAATTTGTTTACAACAAAAGTGTATCATGTGAGGAT

Coding sequence (CDS)

GAGACTCCTCTTGACTTTGCTACTTTGTCAAATAAAAAATATTGTCAATGGAATCAATGCAACCGAAAGGTGTGTATTAAAATCGTGTTTCGTTCATTCATCTTCAAGAATATCAAAGGTACTTCTGCTACTCCGATCACAGTCAAATTTGTTTACAACAAAAGTGTATCATGTGAGGAT

Protein sequence

ETPLDFATLSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
Homology
[Close]
BLAST of MS013690 vs. NCBI nr
Match: XP_022153637.1 (polygalacturonase-like [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 2   TPLDFATLSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE 60
           T + F  + +++YC WNQCNRKV   I      FKNI+GTSATPI VK V +KSV CE
Sbjct: 280 TNVSFPIIIDQEYCPWNQCNRKVPSSIKISKVSFKNIRGTSATPIAVKIVCSKSVPCE 337

[Close]
BLAST of MS013690 vs. NCBI nr
Match: XP_038895545.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 11  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE 60
           +++YC WNQCNRKV  KI      FKNIKGTSATP+ VK V +KSV CE
Sbjct: 308 DQEYCPWNQCNRKVPSKIKISKVSFKNIKGTSATPVAVKLVCSKSVPCE 356

[Close]
BLAST of MS013690 vs. NCBI nr
Match: XP_022151199.1 (exopolygalacturonase-like, partial [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-08
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 11  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED 61
           +++YC WNQCNRKV   I      FKNI+GTSATPI VK V +KSV CED
Sbjct: 309 DQEYCPWNQCNRKVPSSIKISKVSFKNIRGTSATPIAVKLVCSKSVPCED 358

[Close]
BLAST of MS013690 vs. NCBI nr
Match: XP_022157826.1 (exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 6.3e-08
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 11  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE 60
           +++YC WNQCNRKV  KI      FKNIKGTSATP+ VK V +KS+ CE
Sbjct: 306 DQEYCPWNQCNRKVPSKIKVSKVSFKNIKGTSATPVAVKLVCSKSIPCE 354

[Close]
BLAST of MS013690 vs. NCBI nr
Match: KAA0059167.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >KAA0059172.1 exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK19347.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 8.2e-08
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 11  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE 60
           +++YC WNQCNRKV  KI   +  FKNI+GTSATP+ VK V +KS+ CE
Sbjct: 302 DQEYCPWNQCNRKVPSKIKISNVSFKNIRGTSATPVAVKLVCSKSIPCE 350

[Close]
BLAST of MS013690 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-05
Identity = 20/52 (38.46%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 9   LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED 61
           L +++YC WN+C +    K+   +  FKNI+GTSA P  +KF+ + S  C++
Sbjct: 308 LIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQN 359

[Close]
BLAST of MS013690 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-05
Identity = 20/52 (38.46%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 9   LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED 61
           L +++YC WN+C +    K+   +  FKNI+GTSA P  +KF+ + S  C++
Sbjct: 308 LIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQN 359

[Close]
BLAST of MS013690 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.3e-04
Identity = 22/50 (44.00%), Postives = 28/50 (56.00%), Query Frame = 0 

Query: 9   LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC 59
           L ++ YC +NQC  +V   +      FKNIKGTS T   VK V +KS  C
Sbjct: 266 LIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPC 315

[Close]
BLAST of MS013690 vs. ExPASy TrEMBL
Match: A0A6J1DJH0 (polygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111021092 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.0e-09
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 2   TPLDFATLSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE 60
           T + F  + +++YC WNQCNRKV   I      FKNI+GTSATPI VK V +KSV CE
Sbjct: 280 TNVSFPIIIDQEYCPWNQCNRKVPSSIKISKVSFKNIRGTSATPIAVKIVCSKSVPCE 337

[Close]
BLAST of MS013690 vs. ExPASy TrEMBL
Match: A0A6J1DCB0 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019177 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 11  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED 61
           +++YC WNQCNRKV   I      FKNI+GTSATPI VK V +KSV CED
Sbjct: 309 DQEYCPWNQCNRKVPSSIKISKVSFKNIRGTSATPIAVKLVCSKSVPCED 358

[Close]
BLAST of MS013690 vs. ExPASy TrEMBL
Match: A0A6J1DZB6 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024445 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 11  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE 60
           +++YC WNQCNRKV  KI      FKNIKGTSATP+ VK V +KS+ CE
Sbjct: 306 DQEYCPWNQCNRKVPSKIKVSKVSFKNIKGTSATPVAVKLVCSKSIPCE 354

[Close]
BLAST of MS013690 vs. ExPASy TrEMBL
Match: A0A5D3D708 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00680 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 11  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE 60
           +++YC WNQCNRKV  KI   +  FKNI+GTSATP+ VK V +KS+ CE
Sbjct: 302 DQEYCPWNQCNRKVPSKIKISNVSFKNIRGTSATPVAVKLVCSKSIPCE 350

[Close]
BLAST of MS013690 vs. ExPASy TrEMBL
Match: A0A5A7UTD3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00800 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 11  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE 60
           +++YC WNQCNRKV  KI   +  FKNI+GTSATP+ VK V +KS+ CE
Sbjct: 302 DQEYCPWNQCNRKVPSKIKISNVSFKNIRGTSATPVAVKLVCSKSIPCE 350

[Close]
BLAST of MS013690 vs. TAIR 10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 6.9e-05
Identity = 20/50 (40.00%), Postives = 28/50 (56.00%), Query Frame = 0 

Query: 9   LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC 59
           L +++YC +  C   V  K+       KNIKGTSAT + VK + +K V C
Sbjct: 349 LIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPC 398

[Close]
BLAST of MS013690 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 39.7 bits (91), Expect = 1.0e-03
Identity = 18/50 (36.00%), Postives = 27/50 (54.00%), Query Frame = 0 

Query: 9   LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC 59
           L +++YC +  C   V  ++       K IKGTSAT + VK + +K V C
Sbjct: 348 LIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPC 397

The following BLAST results are available for this feature:
BLAST of MS013690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153637.11.7e-0855.17polygalacturonase-like [Momordica charantia][more]
XP_038895545.13.7e-0863.27exopolygalacturonase-like [Benincasa hispida][more]
XP_022151199.14.8e-0862.00exopolygalacturonase-like, partial [Momordica charantia][more]
XP_022157826.16.3e-0861.22exopolygalacturonase-like [Momordica charantia][more]
KAA0059167.18.2e-0859.18exopolygalacturonase-like [Cucumis melo var. makuwa] >KAA0059172.1 exopolygalact... [more]
BLAST of MS013690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q397661.4e-0538.46Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1[more]
Q397861.4e-0538.46Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1[more]
P245483.3e-0444.00Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1[more]
BLAST of MS013690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DJH08.0e-0955.17polygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111021092 PE=3 SV=1[more]
A0A6J1DCB02.3e-0862.00exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019177 PE=3 SV... [more]
A0A6J1DZB63.0e-0861.22exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024445 PE=3 SV... [more]
A0A5D3D7084.0e-0859.18Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7UTD34.0e-0859.18Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
BLAST of MS013690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G14040.16.9e-0540.00Pectin lyase-like superfamily protein [more]
AT3G07850.11.0e-0336.00Pectin lyase-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013690.1MS013690.1mRNA