MS013609 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGAACATTAAAATTCCTACTGCTAAAACAAGAACCAGGAAGCGAGTCTCTGATCCCGATCTCACGAGCTCCGATCAAAGGAAGCGGACCGGCAATGATATTGACCTCGATCTCGACCTTTCCGAGTACGTACTATTTCCATTTCTGTTCCACTTTCTACTGATTTTCAGAAGCTTGATAATGATATCTGCTATGTGCAGCGATCTCAAAGGGATAGTGTCGGCACTGAATCAGATAAGAGAGAAAGCTCAGAAGGACGACCAGAAAAAGAATGAAGAGACTATCTCAAGGTAATTTGAGTGGTTTTGCTCGATCGGAAATTATTGATACTTATTTAATTGATAGGAGTAGCTGAAACTGTGTATTCTTGTGCGTATTTTCGATTCTCGAATTTCTGGACATGGCTGCTGATTTGCGCCTCATTTGTTTCTTTTAGTAGATTTGAACTGACCTCTGTAGTGATTTGATTCTATTATTTACGTGATGTGATTTCATTATAAAATTCAAATGGTTGCCTGATTCAAACTTGACTTTCTGGATCAGACTTGATCCGCCTCACCGTTTCTGTCAAACATTTGGCTGTTTTCCAACTTCGATCCGTGTCGCTCCTTTTTAATGACAGTTAAATTATTTTCTTAGCTAATGCTTCTCTTCATGTCGTTCACTAAAACGATTTTTTTAATGTTTACATTTTGACAGTGTATCCTCTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGTAGGTAACTCGATTGTGAGCATTTTCACTTGATCGAAATCTTCCGGTTCAGGACAGTTGCTCGCTTCTGTTTTTGGTTGAATTAGTACACAGAATAAAATCAATTTATTTTCCCCAACTAATTTCAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGGTTGGTGGAGAACAAATATACTCGGAATATAGACCATTCATATTCAAGAGCAAATTCAGTCATTCTATTTTGTTTTAGTTCCATTGTACATTATCCACATGTTGCGTTGAAATTAATTTGGCTTCTTTATAGTGCGAAAACTGTTTAAAGGACGAAACTGCTAAATTCCAAGCACTTCACGAGAAATTCACAAAAGAGAGAGCCACACACCTCCAGGCCATAAAAGGTAATATCCACTTCGAGTAATTTGGTGAAAACTTTTGCATTATTTAGTCATTACTTCTGTTTAGATTAATTTGCACTTTATTTATCAAACATCAACTATCGCATTCATGAGGTTAGGTTTCAATCTGGTAAATATTCACTTAACGTGAGGCCTTACCAATGAATAAGCAAACCTTTGTCATTTATAATTTCCAAATATCGCATTCATGAGGTTAGGTTTCAATCTGGTAAATATTCCAAATATATACAGAGTACAGACCATGGGCTTATGATCTTAAATCATTCAAGTTCAAGACGATTCTCTAAATAGTTCCCCCCACCCCTTTTTGGTTATGTTTTTAATTTCAGATGCTGTTTGGCTTTGCAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGTAAGTAAGAAGTTGTACATCAATGAGCACCGAACGTTATATTATCTATTTGCCTTTGCATCTGTAACAGGAAAGAGAGAAAGGAACCTGATATCTGAACAAGAGAAAGCTTGTGCTGACAAAATTGCTCAACTGGAGGAGTCGTTGAAAAGGAAAAAGCAGGTATACGATCAGTAGTTCATAAAATTATCACCAACGCCTTCCCCCTTCTATGTTAAGGTGCTCCTTATAACACTTCGATCTGGAACACAGGATGATAAGACTTTCAGCCTTTTGCGGAAAACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCGGAAGAT ATGGGGAACATTAAAATTCCTACTGCTAAAACAAGAACCAGGAAGCGAGTCTCTGATCCCGATCTCACGAGCTCCGATCAAAGGAAGCGGACCGGCAATGATATTGACCTCGATCTCGACCTTTCCGAGTACGTACTATTTCCATTTCTGTTCCACTTTCTACTGATTTTCAGAAGCTTGATAATGATATCTGCTATGTGCAGCGATCTCAAAGGGATAGTGTCGGCACTGAATCAGATAAGAGAGAAAGCTCAGAAGGACGACCAGAAAAAGAATGAAGAGACTATCTCAAGTGTATCCTCTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGCGAAAACTGTTTAAAGGACGAAACTGCTAAATTCCAAGCACTTCACGAGAAATTCACAAAAGAGAGAGCCACACACCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAACAAGAGAAAGCTTGTGCTGACAAAATTGCTCAACTGGAGGAGTCGTTGAAAAGGAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAAACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCGGAAGAT ATGGGGAACATTAAAATTCCTACTGCTAAAACAAGAACCAGGAAGCGAGTCTCTGATCCCGATCTCACGAGCTCCGATCAAAGGAAGCGGACCGGCAATGATATTGACCTCGATCTCGACCTTTCCGAGTACGTACTATTTCCATTTCTGTTCCACTTTCTACTGATTTTCAGAAGCTTGATAATGATATCTGCTATGTGCAGCGATCTCAAAGGGATAGTGTCGGCACTGAATCAGATAAGAGAGAAAGCTCAGAAGGACGACCAGAAAAAGAATGAAGAGACTATCTCAAGTGTATCCTCTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGCGAAAACTGTTTAAAGGACGAAACTGCTAAATTCCAAGCACTTCACGAGAAATTCACAAAAGAGAGAGCCACACACCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAACAAGAGAAAGCTTGTGCTGACAAAATTGCTCAACTGGAGGAGTCGTTGAAAAGGAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAAACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCGGAAGAT MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSEYVLFPFLFHFLLIFRSLIMISAMCSDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED Homology
BLAST of MS013609 vs. NCBI nr
Match: XP_022140180.1 (DNA ligase 1 [Momordica charantia] >XP_022140181.1 DNA ligase 1 [Momordica charantia] >XP_022140182.1 DNA ligase 1 [Momordica charantia]) HSP 1 Score: 383.6 bits (984), Expect = 1.2e-102 Identity = 215/241 (89.21%), Postives = 216/241 (89.63%), Query Frame = 0
BLAST of MS013609 vs. NCBI nr
Match: XP_023001751.1 (DNA ligase 1 [Cucurbita maxima]) HSP 1 Score: 358.6 bits (919), Expect = 4.2e-95 Identity = 199/241 (82.57%), Postives = 212/241 (87.97%), Query Frame = 0
BLAST of MS013609 vs. NCBI nr
Match: XP_022927498.1 (DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_19931, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019621.1 hypothetical protein SDJN02_18584, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 354.0 bits (907), Expect = 1.0e-93 Identity = 198/241 (82.16%), Postives = 211/241 (87.55%), Query Frame = 0
BLAST of MS013609 vs. NCBI nr
Match: XP_023520366.1 (DNA ligase 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 350.5 bits (898), Expect = 1.1e-92 Identity = 196/241 (81.33%), Postives = 210/241 (87.14%), Query Frame = 0
BLAST of MS013609 vs. NCBI nr
Match: XP_004146600.1 (DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X1 [Cucumis sativus] >KGN64675.1 hypothetical protein Csa_013771 [Cucumis sativus]) HSP 1 Score: 348.6 bits (893), Expect = 4.3e-92 Identity = 194/241 (80.50%), Postives = 211/241 (87.55%), Query Frame = 0
BLAST of MS013609 vs. ExPASy TrEMBL
Match: A0A6J1CEE2 (DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111010912 PE=4 SV=1) HSP 1 Score: 383.6 bits (984), Expect = 5.9e-103 Identity = 215/241 (89.21%), Postives = 216/241 (89.63%), Query Frame = 0
BLAST of MS013609 vs. ExPASy TrEMBL
Match: A0A6J1KJH3 (DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 2.0e-95 Identity = 199/241 (82.57%), Postives = 212/241 (87.97%), Query Frame = 0
BLAST of MS013609 vs. ExPASy TrEMBL
Match: A0A6J1EL64 (DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 5.0e-94 Identity = 198/241 (82.16%), Postives = 211/241 (87.55%), Query Frame = 0
BLAST of MS013609 vs. ExPASy TrEMBL
Match: A0A0A0LRW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 2.1e-92 Identity = 194/241 (80.50%), Postives = 211/241 (87.55%), Query Frame = 0
BLAST of MS013609 vs. ExPASy TrEMBL
Match: A0A5D3DS94 (DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00780 PE=4 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 4.0e-91 Identity = 193/241 (80.08%), Postives = 209/241 (86.72%), Query Frame = 0
BLAST of MS013609 vs. TAIR 10
Match: AT2G33793.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 227.6 bits (579), Expect = 1.0e-59 Identity = 119/175 (68.00%), Postives = 152/175 (86.86%), Query Frame = 0
BLAST of MS013609 vs. TAIR 10
Match: AT2G46980.2 (unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 19; Bacteria - 205; Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22; Other Eukaryotes - 1035 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 7.3e-05 Identity = 38/135 (28.15%), Postives = 63/135 (46.67%), Query Frame = 0
BLAST of MS013609 vs. TAIR 10
Match: AT2G46980.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. ) HSP 1 Score: 45.4 bits (106), Expect = 7.3e-05 Identity = 38/135 (28.15%), Postives = 63/135 (46.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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