MS013546 (gene) Bitter gourd (TR) v1

Overview


Name	MS013546
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L11
Location	scaffold402: 2340739 .. 2342025 (-)
RNA-Seq Expression	MS013546
Synteny	MS013546

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGCTTCGGAGAAGAAGCTTTCGAACCCCATGCGCGATATTAAAGTCCAGAAGCTGGTTCTTAACATTTCCGTCGGCGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTCTCCGCCCTTCTTCTTTTGCGCACTCGTTTTTTTCCCTTTCATAACTTCACCCCATATGCATTCCGATCGATTTCTTGAATTCTACAACGGTTTCTTTATCCATAGGTGCTTGAACAACTAAGTGGCCAAACCCCCGTCTTCTCGAAAGGTGCTGTCGCTATTTCATTTCAATTTTATGTTTCTTTTTTCTTAGACCCTAGGGGTCTCTGTTGTTTGTTTTCTAATTTTCGTTTCTGTGAATGGAATAGCCCGTTACACCGTTCGGTCTTTTGGGATCAGGCGTAATGAGAAGATCGCGTGCTATGTGACAGTGAGGGGCGAAAAGGCAATGCAACTTCTTGAAAGTGGTTTGAAGGTTAAGGAATACGAACTCTTGCGCAGGAACTTCAGTGATACTGGCTGCTTTGGTTTTGGTATTCAGGAGCATATTGATCTCGGAATCAAGTTAGTTCTCATTATCCATTATCCTTTCTTAATCTTTGTGATTGTTATATGTCTGTATATTCAACACACATTGTTCTTGCTCACTAGGAACCTTATGTCCTACCTTAAACTGATTTAAGAATATACATTTTCGGGTTTTGGTCTTGCTGTAGTTACAGAAACTGGCCTGATTAGAATTCTGACATTATTGGCTTTACTCTTAAGCACTGTAAATGAGTAAACTTTATCTGAAACTGGTCATAGAGGAGACGCTGGAAACATTGGATAATCTCATCATACTGTAGGAGTGGCGTTGATACGGAACCGTACTTATACATGAATTGAATACACACTTTGAGTTGAGAATTGAGAATTTAAACTTTTGATTATATTTGGATATGCAATAGTGGCTTTCCATTCAGTAAATAATCTGCTGACCAAGGCATGTGTAATCCGGGAGGGTCTAGTTTTTCTGATCTGTAATGATAACATATATGCATTATTGAGCTATATGGAGCCTTGACAAATAATCACTGTCTTTTCTCCATCTTTAGGTATGACCCTTCTACTGGTATATATGGTATGGACTTCTTTGTTGTTCTAGAACGTCCAGGTTACCGTGTAGGGCGTCGACGTCGATGCAAGTCACGTGTTGGAATTCAGCATAGAGTCACCAAAGAGGATTCAATGAAGTGGTTTCAAGTTAAATATGAAGGTGTCATCCTTAATAAGTCTCAAAACATTACTGGC

mRNA sequence

CAGGCTTCGGAGAAGAAGCTTTCGAACCCCATGCGCGATATTAAAGTCCAGAAGCTGGTTCTTAACATTTCCGTCGGCGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTGCTTGAACAACTAAGTGGCCAAACCCCCGTCTTCTCGAAAGCCCGTTACACCGTTCGGTCTTTTGGGATCAGGCGTAATGAGAAGATCGCGTGCTATGTGACAGTGAGGGGCGAAAAGGCAATGCAACTTCTTGAAAGTGGTTTGAAGGTTAAGGAATACGAACTCTTGCGCAGGAACTTCAGTGATACTGGCTGCTTTGGTTTTGGTATTCAGGAGCATATTGATCTCGGAATCAAGTATGACCCTTCTACTGGTATATATGGTATGGACTTCTTTGTTGTTCTAGAACGTCCAGGTTACCGTGTAGGGCGTCGACGTCGATGCAAGTCACGTGTTGGAATTCAGCATAGAGTCACCAAAGAGGATTCAATGAAGTGGTTTCAAGTTAAATATGAAGGTGTCATCCTTAATAAGTCTCAAAACATTACTGGC

Coding sequence (CDS)

CAGGCTTCGGAGAAGAAGCTTTCGAACCCCATGCGCGATATTAAAGTCCAGAAGCTGGTTCTTAACATTTCCGTCGGCGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTGCTTGAACAACTAAGTGGCCAAACCCCCGTCTTCTCGAAAGCCCGTTACACCGTTCGGTCTTTTGGGATCAGGCGTAATGAGAAGATCGCGTGCTATGTGACAGTGAGGGGCGAAAAGGCAATGCAACTTCTTGAAAGTGGTTTGAAGGTTAAGGAATACGAACTCTTGCGCAGGAACTTCAGTGATACTGGCTGCTTTGGTTTTGGTATTCAGGAGCATATTGATCTCGGAATCAAGTATGACCCTTCTACTGGTATATATGGTATGGACTTCTTTGTTGTTCTAGAACGTCCAGGTTACCGTGTAGGGCGTCGACGTCGATGCAAGTCACGTGTTGGAATTCAGCATAGAGTCACCAAAGAGGATTCAATGAAGTGGTTTCAAGTTAAATATGAAGGTGTCATCCTTAATAAGTCTCAAAACATTACTGGC

Protein sequence

QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNITG

Homology

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BLAST of MS013546 vs. NCBI nr
Match: KAF5195663.1 (60S ribosomal protein L11 [Thalictrum thalictroides])

HSP 1 Score: 363.6 bits (932), Expect = 9.8e-97
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

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BLAST of MS013546 vs. NCBI nr
Match: XP_022139845.1 (60S ribosomal protein L11-1 [Momordica charantia])

HSP 1 Score: 362.8 bits (930), Expect = 1.7e-96
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIAC+VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACHVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

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BLAST of MS013546 vs. NCBI nr
Match: OVA17001.1 (Ribosomal protein L5 [Macleaya cordata])

HSP 1 Score: 362.5 bits (929), Expect = 2.2e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRVGRRRRCKSRVGIQHRVTKED+MKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

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BLAST of MS013546 vs. NCBI nr
Match: XP_030519961.1 (60S ribosomal protein L11-1 isoform X1 [Rhodamnia argentea] >XP_030519968.1 60S ribosomal protein L11-1 isoform X2 [Rhodamnia argentea] >XP_030519975.1 60S ribosomal protein L11-1 isoform X3 [Rhodamnia argentea])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

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BLAST of MS013546 vs. NCBI nr
Match: XP_004133951.1 (60S ribosomal protein L11 isoform X1 [Cucumis sativus] >XP_008438243.1 PREDICTED: 60S ribosomal protein L11-like isoform X1 [Cucumis melo] >XP_038886885.1 60S ribosomal protein L11-like isoform X1 [Benincasa hispida] >KAA0049088.1 60S ribosomal protein L11 isoform X1 [Cucumis melo var. makuwa] >TYK17475.1 60S ribosomal protein L11 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 361.3 bits (926), Expect = 4.9e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60
           QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 3   QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 62

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 63  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 122

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNI 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKED+MKWFQVKYEGVILNKSQ I
Sbjct: 123 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 182

Query: 181 TG 183
           TG
Sbjct: 183 TG 184

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BLAST of MS013546 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 356.7 bits (914), Expect = 1.6e-97
Identity = 175/181 (96.69%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+D+MKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 356.7 bits (914), Expect = 1.6e-97
Identity = 175/181 (96.69%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+D+MKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 8.7e-96
Identity = 173/179 (96.65%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNI 181
           TGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+D+MKWFQVKYEGVILNKSQ I
Sbjct: 122 TGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180

[Close]

BLAST of MS013546 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-92
Identity = 167/177 (94.35%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKK SNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQ 179
           TGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKED+MKWFQVKYEGVILNK+Q
Sbjct: 122 TGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178

[Close]

BLAST of MS013546 vs. ExPASy Swiss-Prot
Match: Q0DK10 (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-92
Identity = 167/177 (94.35%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKK SNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQ 179
           TGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKED+MKWFQVKYEGVILNK+Q
Sbjct: 122 TGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178

[Close]

BLAST of MS013546 vs. ExPASy TrEMBL
Match: A0A7J6WFD1 (60S ribosomal protein L11 OS=Thalictrum thalictroides OX=46969 GN=FRX31_014753 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 4.8e-97
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. ExPASy TrEMBL
Match: A0A6J1CDE3 (60S ribosomal protein L11-1 OS=Momordica charantia OX=3673 GN=LOC111010658 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.1e-97
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIAC+VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACHVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. ExPASy TrEMBL
Match: A0A200R2R8 (Ribosomal protein L5 OS=Macleaya cordata OX=56857 GN=BVC80_9043g45 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRVGRRRRCKSRVGIQHRVTKED+MKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. ExPASy TrEMBL
Match: A0A5A7U1I5 (60S ribosomal protein L11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003400 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60
           QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 3   QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 62

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 63  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 122

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNI 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKED+MKWFQVKYEGVILNKSQ I
Sbjct: 123 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 182

Query: 181 TG 183
           TG
Sbjct: 183 TG 184

[Close]

BLAST of MS013546 vs. ExPASy TrEMBL
Match: A0A1S3AVK5 (60S ribosomal protein L11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483409 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60
           QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 3   QASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 62

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 63  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 122

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNI 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKED+MKWFQVKYEGVILNKSQ I
Sbjct: 123 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 182

Query: 181 TG 183
           TG
Sbjct: 183 TG 184

[Close]

BLAST of MS013546 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 356.7 bits (914), Expect = 1.1e-98
Identity = 175/181 (96.69%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+D+MKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 356.7 bits (914), Expect = 1.1e-98
Identity = 175/181 (96.69%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+D+MKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 356.7 bits (914), Expect = 1.1e-98
Identity = 175/181 (96.69%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+D+MKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 356.7 bits (914), Expect = 1.1e-98
Identity = 175/181 (96.69%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNIT 181
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+D+MKWFQVKYEGVILNKSQNIT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 182 G 183
           G
Sbjct: 182 G 182

[Close]

BLAST of MS013546 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 339.7 bits (870), Expect = 1.4e-93
Identity = 166/172 (96.51%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 1   MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60

Query: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 130
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+
Sbjct: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120

Query: 131 VVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQNITG 183
           VVLERPGYRV RRRRCK+RVGIQHRVTK+D+MKWFQVKYEGVILNKSQNITG
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 172

The following BLAST results are available for this feature:

BLAST of MS013546 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5195663.1	9.8e-97	99.45	60S ribosomal protein L11 [Thalictrum thalictroides]	[more]
XP_022139845.1	1.7e-96	99.45	60S ribosomal protein L11-1 [Momordica charantia]	[more]
OVA17001.1	2.2e-96	98.90	Ribosomal protein L5 [Macleaya cordata]	[more]
XP_030519961.1	2.9e-96	98.90	60S ribosomal protein L11-1 isoform X1 [Rhodamnia argentea] >XP_030519968.1 60S ...	[more]
XP_004133951.1	4.9e-96	98.35	60S ribosomal protein L11 isoform X1 [Cucumis sativus] >XP_008438243.1 PREDICTED...	[more]

BLAST of MS013546 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42795	1.6e-97	96.69	60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2	[more]
P42794	1.6e-97	96.69	60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2	[more]
P46287	8.7e-96	96.65	60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1	[more]
A2YDY2	2.6e-92	94.35	60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S...	[more]
Q0DK10	2.6e-92	94.35	60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2...	[more]

BLAST of MS013546 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6WFD1	4.8e-97	99.45	60S ribosomal protein L11 OS=Thalictrum thalictroides OX=46969 GN=FRX31_014753 P...	[more]
A0A6J1CDE3	8.1e-97	99.45	60S ribosomal protein L11-1 OS=Momordica charantia OX=3673 GN=LOC111010658 PE=3 ...	[more]
A0A200R2R8	1.1e-96	98.90	Ribosomal protein L5 OS=Macleaya cordata OX=56857 GN=BVC80_9043g45 PE=3 SV=1	[more]
A0A5A7U1I5	2.4e-96	98.35	60S ribosomal protein L11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3AVK5	2.4e-96	98.35	60S ribosomal protein L11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348340...	[more]

BLAST of MS013546 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42740.1	1.1e-98	96.69	ribosomal protein large subunit 16A	[more]
AT3G58700.1	1.1e-98	96.69	Ribosomal L5P family protein	[more]
AT4G18730.1	1.1e-98	96.69	ribosomal protein L16B	[more]
AT5G45775.2	1.1e-98	96.69	Ribosomal L5P family protein	[more]
AT5G45775.1	1.4e-93	96.51	Ribosomal L5P family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 1..177 e-value: 2.4E-72 score: 244.2
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 8..173
IPR031310	Ribosomal protein L5, N-terminal	PFAM	PF00281	Ribosomal_L5	coord: 9..62 e-value: 4.7E-21 score: 74.9
IPR031309	Ribosomal protein L5, C-terminal	PFAM	PF00673	Ribosomal_L5_C	coord: 66..164 e-value: 1.2E-20 score: 73.5
IPR002132	Ribosomal protein L5	PIRSF	PIRSF002161	RPL5p_RPL5a_RPL11e_RPL5o	coord: 1..172 e-value: 1.8E-42 score: 142.9
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 2..181
None	No IPR available	PANTHER	PTHR11994:SF31	60S RIBOSOMAL PROTEIN L11-1	coord: 2..181
IPR020929	Ribosomal protein L5, conserved site	PROSITE	PS00358	RIBOSOMAL_L5	coord: 39..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013546.1	MS013546.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome