MS013341 (gene) Bitter gourd (TR) v1

Overview
NameMS013341
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCOX assembly mitochondrial protein
Locationscaffold402: 475746 .. 476027 (-)
RNA-Seq ExpressionMS013341
SyntenyMS013341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCTACCGGCGAAGCTCCGATCAGCGGCGGCGGCGTTGGCGGTTGCGAGCGGCTGGAGCAGGCTCTCCGAGACTGCCACAGGCGAGTTCCGGAAGGTCCGGCGCGGCGATCGGCTTGCCGGCATCTAAACCTGGCGGAGTGCCTGGTGGCTACGGCTTGCCCTAACGAGGCGGAGGCGGTGCGAACCCTCTGCTCCACCGCCGGAACCGCTCTGAAGAGATCGCAGTGCCAGCAAGCTAAGTTTTCCCTCTCTTTCTGTCTCTCTTCTCTCCAATTA

mRNA sequence

ATGTTACCTACCGGCGAAGCTCCGATCAGCGGCGGCGGCGTTGGCGGTTGCGAGCGGCTGGAGCAGGCTCTCCGAGACTGCCACAGGCGAGTTCCGGAAGGTCCGGCGCGGCGATCGGCTTGCCGGCATCTAAACCTGGCGGAGTGCCTGGTGGCTACGGCTTGCCCTAACGAGGCGGAGGCGGTGCGAACCCTCTGCTCCACCGCCGGAACCGCTCTGAAGAGATCGCAGTGCCAGCAAGCTAAGTTTTCCCTCTCTTTCTGTCTCTCTTCTCTCCAATTA

Coding sequence (CDS)

ATGTTACCTACCGGCGAAGCTCCGATCAGCGGCGGCGGCGTTGGCGGTTGCGAGCGGCTGGAGCAGGCTCTCCGAGACTGCCACAGGCGAGTTCCGGAAGGTCCGGCGCGGCGATCGGCTTGCCGGCATCTAAACCTGGCGGAGTGCCTGGTGGCTACGGCTTGCCCTAACGAGGCGGAGGCGGTGCGAACCCTCTGCTCCACCGCCGGAACCGCTCTGAAGAGATCGCAGTGCCAGCAAGCTAAGTTTTCCCTCTCTTTCTGTCTCTCTTCTCTCCAATTA

Protein sequence

MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLNLAECLVATACPNEAEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL
Homology
BLAST of MS013341 vs. NCBI nr
Match: XP_022142592.1 (uncharacterized protein LOC111012670 [Momordica charantia])

HSP 1 Score: 184.1 bits (466), Expect = 5.5e-43
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0

Query: 1   MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
           MLPTGEAPISGGGVGGCERLEQALRDCHRRVP+GPARRSACRHLN  LAECLVATACPNE
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 61  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 95
           AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 109

BLAST of MS013341 vs. NCBI nr
Match: XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 4.2e-35
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 1  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
          MLP GE+P+  GG GGC+RLEQALR+CH+RVPEGPARRSACRHLN  LAECLVATACP+E
Sbjct: 1  MLPMGESPL--GGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60

Query: 61 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 94
          AEAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 61 AEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

BLAST of MS013341 vs. NCBI nr
Match: XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 4.7e-34
Identity = 80/95 (84.21%), Postives = 86/95 (90.53%), Query Frame = 0

Query: 1  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
          MLPTG A I G   GGCERLEQALR+CH+R+PEGPARRSACRHLN  LAECLVATACP+E
Sbjct: 6  MLPTGGASICGD--GGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATACPSE 65

Query: 61 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 94
          AEAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 66 AEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 98

BLAST of MS013341 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 78/96 (81.25%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 1  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
          M+PTG+API  GG GGCERLEQALRDCH+R+PEGPARRS C HLN   AECLVAT CPNE
Sbjct: 1  MVPTGKAPI--GGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNE 60

Query: 61 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 95
          AEAVRTLCS+ GTALKRSQC+QAKFS S CLSSLQL
Sbjct: 61 AEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

BLAST of MS013341 vs. NCBI nr
Match: XP_022994930.1 (uncharacterized protein LOC111490507 [Cucurbita maxima])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 78/96 (81.25%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 1  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
          M+PTG+API  GG GGCERLEQALRDCH+R+PEGPARRS C HLN   AECLVAT CPNE
Sbjct: 1  MVPTGKAPI--GGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNE 60

Query: 61 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 95
          AEAVRTLCS+ GTALKRSQC+QAKFS S CLSSLQL
Sbjct: 61 AEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

BLAST of MS013341 vs. ExPASy TrEMBL
Match: A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.7e-43
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0

Query: 1   MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
           MLPTGEAPISGGGVGGCERLEQALRDCHRRVP+GPARRSACRHLN  LAECLVATACPNE
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 61  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 95
           AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 109

BLAST of MS013341 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 1  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
          MLP GE+P+  GG GGC+RLEQALR+CH+RVPEGPARRSACRHLN  LAECLVATACP+E
Sbjct: 1  MLPMGESPL--GGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60

Query: 61 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 94
          AEAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 61 AEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

BLAST of MS013341 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.6e-34
Identity = 78/96 (81.25%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 1  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
          M+PTG+API  GG GGCERLEQALRDCH+R+PEGPARRS C HLN   AECLVAT CPNE
Sbjct: 1  MVPTGKAPI--GGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNE 60

Query: 61 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 95
          AEAVRTLCS+ GTALKRSQC+QAKFS S CLSSLQL
Sbjct: 61 AEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

BLAST of MS013341 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.6e-34
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 0

Query: 1  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
          MLP GE+P+ G    GCERLEQALR+CH+RVPEGPARRSACRHLN  LAECLVATACP+E
Sbjct: 1  MLPIGESPMCGD--DGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60

Query: 61 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 94
           EAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 61 VEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

BLAST of MS013341 vs. ExPASy TrEMBL
Match: A0A1S3C8S8 (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.6e-34
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 0

Query: 1  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNE 60
          MLP GE+P+ G    GCERLEQALR+CH+RVPEGPARRSACRHLN  LAECLVATACP+E
Sbjct: 1  MLPIGESPMCGD--DGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60

Query: 61 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 94
           EAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 61 VEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

BLAST of MS013341 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-25
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 17  CERLEQALRDCHRRVPEGPARRSACRHLN--LAECLVATACPNEAEAVRTLCSTAGTALK 76
           C+RLE+AL  CHRR+PEGPARRS CRHLN   AEC+VA ACP E+EAVR+LCS+ GT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 77  RSQCQQAKFSLSFCLSSLQ 94
           R QC+ A+ SLS CLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142592.15.5e-4396.88uncharacterized protein LOC111012670 [Momordica charantia][more]
XP_004145445.14.2e-3584.21uncharacterized protein LOC101219184 [Cucumis sativus][more]
XP_038893663.14.7e-3484.21uncharacterized protein LOC120082530 [Benincasa hispida][more]
XP_023542217.11.0e-3381.25uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo][more]
XP_022994930.11.4e-3381.25uncharacterized protein LOC111490507 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CN742.7e-4396.88uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A0A0LYC12.1e-3584.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1[more]
A0A6J1K2P56.6e-3481.25uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507... [more]
A0A5D3CLT38.6e-3482.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C8S88.6e-3482.11uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=... [more]
Match NameE-valueIdentityDescription
AT1G31175.15.5e-2568.35unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013341.1MS013341.1mRNA