MS013312 (gene) Bitter gourd (TR) v1

Overview
NameMS013312
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRPM1-interacting protein 4-like
Locationscaffold402: 237231 .. 237905 (-)
RNA-Seq ExpressionMS013312
SyntenyMS013312
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACACCGACGACGTACCGTACACCATCTGCTTCGAGAACGCCGGCGAACTCCGAGCCGCTGGCGTGACCTTCGATCCCAACGATCCGGACACCTATCCGCCGGAGGCCTTCCCCGCCGCGAACCATAGATCTAATCCCTCAGACCGCCGGCGGCATCACGATCACCACCGGCGGCCTCGCGAGCAGCCTAATCGCGACCGGCGAAGCTCCGGATCGGAGAAATTGAGCAGCGAGAGGAGCGGTTCGGATTACTCGCTTCTGAAGGAGCCGGGGGGGAGGAGGAAGAAGATCAATAATGGAGTGGACGGAATCAGCCGGTTTCCTCCGACGGCGGCCGGCCATGGCGGGAACCCTAACCCTAACCCTAACCCTAGGGCTCGGCGGAATGAGGGGGAAATGGTGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGATACACGGCGATTTTCAATAAAGTGAAGATGGAGAAGAAAATTGGAGGTTCGAATAGTTCTCAGGCTGTGCCGCCATTGACGAATCAGACCAAGCAACAGCCCATCCCCCAGACAGTCCATGGATCCACTTCCTTTGTATCCAAGGTAAACCCTTTNTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

GCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACACCGACGACGTACCGTACACCATCTGCTTCGAGAACGCCGGCGAACTCCGAGCCGCTGGCGTGACCTTCGATCCCAACGATCCGGACACCTATCCGCCGGAGGCCTTCCCCGCCGCGAACCATAGATCTAATCCCTCAGACCGCCGGCGGCATCACGATCACCACCGGCGGCCTCGCGAGCAGCCTAATCGCGACCGGCGAAGCTCCGGATCGGAGAAATTGAGCAGCGAGAGGAGCGGTTCGGATTACTCGCTTCTGAAGGAGCCGGGGGGGAGGAGGAAGAAGATCAATAATGGAGTGGACGGAATCAGCCGGTTTCCTCCGACGGCGGCCGGCCATGGCGGGAACCCTAACCCTAACCCTAACCCTAGGGCTCGGCGGAATGAGGGGGAAATGGTGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGATACACGGCGATTTTCAATAAAGTGAAGATGGAGAAGAAAATTGGAGGTTCGAATAGTTCTCAGGCTGTGCCGCCATTGACGAATCAGACCAAGCAACAGCCCATCCCCCAGACAGTCCATGGATCCACTTCCTTTGTATCCAAGGTAAACCCTTTNTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

GCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACACCGACGACGTACCGTACACCATCTGCTTCGAGAACGCCGGCGAACTCCGAGCCGCTGGCGTGACCTTCGATCCCAACGATCCGGACACCTATCCGCCGGAGGCCTTCCCCGCCGCGAACCATAGATCTAATCCCTCAGACCGCCGGCGGCATCACGATCACCACCGGCGGCCTCGCGAGCAGCCTAATCGCGACCGGCGAAGCTCCGGATCGGAGAAATTGAGCAGCGAGAGGAGCGGTTCGGATTACTCGCTTCTGAAGGAGCCGGGGGGGAGGAGGAAGAAGATCAATAATGGAGTGGACGGAATCAGCCGGTTTCCTCCGACGGCGGCCGGCCATGGCGGGAACCCTAACCCTAACCCTAACCCTAGGGCTCGGCGGAATGAGGGGGAAATGGTGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGATACACGGCGATTTTCAATAAAGTGAAGATGGAGAAGAAAATTGGAGGTTCGAATAGTTCTCAGGCTGTGCCGCCATTGACGAATCAGACCAAGCAACAGCCCATCCCCCAGACAGTCCATGGATCCACTTCCTTTGTATCCAAGGTAAACCCTTTNTTTTTTTTTTTTTTTTTTTTT

Protein sequence

AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPSDRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRFPPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGGSNSSQAVPPLTNQTKQQPIPQTVHGSTSFVSKVNPXFFFFFFF
Homology
BLAST of MS013312 vs. NCBI nr
Match: XP_022142617.1 (RPM1-interacting protein 4-like [Momordica charantia])

HSP 1 Score: 425.6 bits (1093), Expect = 2.6e-115
Identity = 212/215 (98.60%), Postives = 212/215 (98.60%), Query Frame = 0

Query: 1   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 60
           AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 61  DRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRF 120
           DRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRF
Sbjct: 63  DRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRF 122

Query: 121 PPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKI 180
           PPTAAGHGG  NPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKI
Sbjct: 123 PPTAAGHGG--NPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKI 182

Query: 181 GGSNSSQAVPPLTNQTKQQPIPQTVHGSTSFVSKV 216
           GGSNSSQAVPPLTNQTKQQPIPQ VHGSTSFVSKV
Sbjct: 183 GGSNSSQAVPPLTNQTKQQPIPQIVHGSTSFVSKV 215

BLAST of MS013312 vs. NCBI nr
Match: XP_038895249.1 (RPM1-interacting protein 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 275.8 bits (704), Expect = 3.3e-70
Identity = 154/224 (68.75%), Postives = 173/224 (77.23%), Query Frame = 0

Query: 1   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 60
           AKSSSHVPKFGNWD+DDVPYTICFENA ELRAAGV FDPNDPDTYPP A    N  S P+
Sbjct: 4   AKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVDFDPNDPDTYPPAA--VINQNSTPA 63

Query: 61  DRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKE--PGGRRKKINNGVDGIS 120
           D R   D+H+R      R+  +SGSEKLSSERSGSDY+LLKE    GR+KK +NG +G+S
Sbjct: 64  DHR--GDYHQR------REMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKHSNGAEGMS 123

Query: 121 RFPP--TAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKM 180
           RF P  T +GHGG  N NP  R R +EGEM+ASVPKFGSWD RDPKSGDGYTAIFNKVK+
Sbjct: 124 RFTPTTTVSGHGGKGNRNPRVR-RNDEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKI 183

Query: 181 EKKIGGSNSSQAVPPLTNQTKQQPIPQ-----TVHGSTSFVSKV 216
           EK+IGGSN+ QAVPPL NQTK+ PI Q     T HGS SFVSK+
Sbjct: 184 EKQIGGSNNPQAVPPLMNQTKKLPIAQTTTTATTHGSNSFVSKI 216

BLAST of MS013312 vs. NCBI nr
Match: XP_038895247.1 (RPM1-interacting protein 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 273.9 bits (699), Expect = 1.3e-69
Identity = 159/237 (67.09%), Postives = 179/237 (75.53%), Query Frame = 0

Query: 1   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 60
           AKSSSHVPKFGNWD+DDVPYTICFENA ELRAAGV FDPNDPDTYPP A    N  S P+
Sbjct: 4   AKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVDFDPNDPDTYPPAA--VINQNSTPA 63

Query: 61  DRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKE--PGGRRKKINNGVDGIS 120
           D R   D+H+R      R+  +SGSEKLSSERSGSDY+LLKE    GR+KK +NG +G+S
Sbjct: 64  DHR--GDYHQR------REMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKHSNGAEGMS 123

Query: 121 RFPP--TAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKM 180
           RF P  T +GHGG  N NP  R R +EGEM+ASVPKFGSWD RDPKSGDGYTAIFNKVK+
Sbjct: 124 RFTPTTTVSGHGGKGNRNPRVR-RNDEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKI 183

Query: 181 EKKIGGSNSSQAVPPLTNQTKQQPIPQ-----TVHGSTSFVSKVNPXFFF---FFFF 226
           EK+IGGSN+ QAVPPL NQTK+ PI Q     T HGS SFVSKV   F F   F+F+
Sbjct: 184 EKQIGGSNNPQAVPPLMNQTKKLPIAQTTTTATTHGSNSFVSKVLITFCFLSNFYFY 229

BLAST of MS013312 vs. NCBI nr
Match: KAA0054298.1 (RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK12335.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-65
Identity = 150/224 (66.96%), Postives = 167/224 (74.55%), Query Frame = 0

Query: 2   KSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPSD 61
           KSSSHVPKFGNWD+DDVPYTI FENA EL+AAGVTFDPNDPDTYPP  F  AN  S P+D
Sbjct: 5   KSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVF--ANQNSIPAD 64

Query: 62  RRRHH---DHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLK-EPGGRRKKINNGVDGI 121
             RHH   D H+R      R+  +SGSEKLSSERS SDY+LLK +  GR+KK +NG +G+
Sbjct: 65  HHRHHDGEDSHQR------REIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGM 124

Query: 122 SRFPPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKME 181
           SRF PT     GN NP      R NEGEM+ASVPKFGSWD RDPKSGDGYTAIFNKVK+E
Sbjct: 125 SRFSPTTVDGKGNRNPRVR---RNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIE 184

Query: 182 KKIGGSNSSQAVPPLTNQTKQQPIPQT------VHGSTSFVSKV 216
           K+IGGSN+ Q VPPL NQTK QP+ QT        GSTSFVSKV
Sbjct: 185 KQIGGSNNPQTVPPLMNQTK-QPMTQTTVAKTSTQGSTSFVSKV 216

BLAST of MS013312 vs. NCBI nr
Match: XP_008458983.1 (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-65
Identity = 149/224 (66.52%), Postives = 167/224 (74.55%), Query Frame = 0

Query: 2   KSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPSD 61
           KSSSHVPKFGNWD+DDVPYTI FENA EL+AAGVTFDPNDPDTYPP  F  AN  S P+D
Sbjct: 5   KSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVF--ANQNSIPAD 64

Query: 62  RRRHH---DHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLK-EPGGRRKKINNGVDGI 121
             RHH   D H+R      R+  +SGSEKLSSERS SDY+LLK +  GR+KK +NG +G+
Sbjct: 65  HHRHHDGEDSHQR------REIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGM 124

Query: 122 SRFPPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKME 181
           SRF PT     GN NP      R NEGEM+ASVPKFGSWD RDPKSGDGYTAIFNKVK+E
Sbjct: 125 SRFSPTTVDGKGNRNPRVR---RNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIE 184

Query: 182 KKIGGSNSSQAVPPLTNQTKQQPIPQT------VHGSTSFVSKV 216
           K+IGGSN+ Q VPPL NQTK QP+ QT        GSTSFVSK+
Sbjct: 185 KQIGGSNNPQTVPPLMNQTK-QPMTQTTVAKTSTQGSTSFVSKI 216

BLAST of MS013312 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.4e-16
Identity = 69/198 (34.85%), Postives = 92/198 (46.46%), Query Frame = 0

Query: 5   SHVPKFGNWDTDD-VPYTICFENAGELRAAG-VTFDPNDPDTYPPEAFPAANHRSNPSDR 64
           S+VPKFGNW+ ++ VPYT  F+ A + RA G    +PNDP+        A  H  +   +
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 65  RRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRFPP 124
               D  RR RE   R R  S  ++       S+ +  K  G  R   NN  D  S    
Sbjct: 64  PEQVDTVRRSREH-MRSREESELKQFGDAGGSSNEAANKRQG--RASQNNSYDNKSPLHK 123

Query: 125 TAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGG 184
            +    G   P P         E V  VPKFG WD  +P S DGYT IFNKV+ E+  G 
Sbjct: 124 NSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGA 183

Query: 185 SNSSQAVPPLTNQTKQQP 201
           + S  +  P T+Q+ + P
Sbjct: 184 NVSGSSRTP-THQSSRNP 197

BLAST of MS013312 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0

Query: 150 VPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGGSNSS 187
           +PKFG WD  DP S +G+T IFNK + EKK GG   S
Sbjct: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A6J1CND0 (RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 212/215 (98.60%), Postives = 212/215 (98.60%), Query Frame = 0

Query: 1   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 60
           AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 61  DRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRF 120
           DRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRF
Sbjct: 63  DRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRF 122

Query: 121 PPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKI 180
           PPTAAGHGG  NPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKI
Sbjct: 123 PPTAAGHGG--NPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKI 182

Query: 181 GGSNSSQAVPPLTNQTKQQPIPQTVHGSTSFVSKV 216
           GGSNSSQAVPPLTNQTKQQPIPQ VHGSTSFVSKV
Sbjct: 183 GGSNSSQAVPPLTNQTKQQPIPQIVHGSTSFVSKV 215

BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A5A7UH42 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001090 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 5.4e-66
Identity = 150/224 (66.96%), Postives = 167/224 (74.55%), Query Frame = 0

Query: 2   KSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPSD 61
           KSSSHVPKFGNWD+DDVPYTI FENA EL+AAGVTFDPNDPDTYPP  F  AN  S P+D
Sbjct: 5   KSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVF--ANQNSIPAD 64

Query: 62  RRRHH---DHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLK-EPGGRRKKINNGVDGI 121
             RHH   D H+R      R+  +SGSEKLSSERS SDY+LLK +  GR+KK +NG +G+
Sbjct: 65  HHRHHDGEDSHQR------REIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGM 124

Query: 122 SRFPPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKME 181
           SRF PT     GN NP      R NEGEM+ASVPKFGSWD RDPKSGDGYTAIFNKVK+E
Sbjct: 125 SRFSPTTVDGKGNRNPRVR---RNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIE 184

Query: 182 KKIGGSNSSQAVPPLTNQTKQQPIPQT------VHGSTSFVSKV 216
           K+IGGSN+ Q VPPL NQTK QP+ QT        GSTSFVSKV
Sbjct: 185 KQIGGSNNPQTVPPLMNQTK-QPMTQTTVAKTSTQGSTSFVSKV 216

BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A1S3C9P5 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 7.0e-66
Identity = 149/224 (66.52%), Postives = 167/224 (74.55%), Query Frame = 0

Query: 2   KSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPSD 61
           KSSSHVPKFGNWD+DDVPYTI FENA EL+AAGVTFDPNDPDTYPP  F  AN  S P+D
Sbjct: 5   KSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVF--ANQNSIPAD 64

Query: 62  RRRHH---DHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLK-EPGGRRKKINNGVDGI 121
             RHH   D H+R      R+  +SGSEKLSSERS SDY+LLK +  GR+KK +NG +G+
Sbjct: 65  HHRHHDGEDSHQR------REIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGM 124

Query: 122 SRFPPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKME 181
           SRF PT     GN NP      R NEGEM+ASVPKFGSWD RDPKSGDGYTAIFNKVK+E
Sbjct: 125 SRFSPTTVDGKGNRNPRVR---RNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIE 184

Query: 182 KKIGGSNSSQAVPPLTNQTKQQPIPQT------VHGSTSFVSKV 216
           K+IGGSN+ Q VPPL NQTK QP+ QT        GSTSFVSK+
Sbjct: 185 KQIGGSNNPQTVPPLMNQTK-QPMTQTTVAKTSTQGSTSFVSKI 216

BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A0A0M0M0 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G699040 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 8.6e-64
Identity = 144/224 (64.29%), Postives = 167/224 (74.55%), Query Frame = 0

Query: 2   KSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPSD 61
           KSSSHVPKFGNWD+DDVPYTI FENA EL+AAG+TFDPNDPDTYPP A   AN  S+P++
Sbjct: 5   KSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTA--VANQNSSPAN 64

Query: 62  RRRHH---DHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLK-EPGGRRKKINNGVDGI 121
             R+H   D H+R      R+  +SGSEKLSSERS SDY+LLK +  GR+KK +NG +G+
Sbjct: 65  HHRYHDGDDSHQR------REIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGM 124

Query: 122 SRFPPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKME 181
           SRF P      GN NP      R NEGEM+ASVPKFGSWD RDPKSGDGYTAIFNKVK+E
Sbjct: 125 SRFSPATVDGKGNRNPRVR---RNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIE 184

Query: 182 KKIGGSNSSQAVPPLTNQTKQQPIPQTV------HGSTSFVSKV 216
           K++GGSN +Q+VP L NQTK QPI QT       HGSTSF SK+
Sbjct: 185 KQVGGSNDTQSVPALMNQTK-QPITQTTVGKSSSHGSTSFGSKI 216

BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A6J1JVE9 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 8.0e-62
Identity = 140/220 (63.64%), Postives = 155/220 (70.45%), Query Frame = 0

Query: 1   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 60
           A SS HVPKFGNWDTDDVPYTICFENA ELRAAG+TFDPNDPDTYPPE F  A H     
Sbjct: 4   ANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNGG-- 63

Query: 61  DRRRHHDHHRRPREQPNRDR---RSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGI 120
                 +H RRPR+QPNR+R    +SGSEKLSSERSGS+Y+LLK      K   NGV+GI
Sbjct: 64  ------EHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLK------KSKENGVEGI 123

Query: 121 SRFPPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKME 180
           SR  P  AGHG NP P            + ASVPKFGSWDA+DPKSGDGYTAIFNK+K+E
Sbjct: 124 SRLAPAVAGHGVNPKP------------VTASVPKFGSWDAKDPKSGDGYTAIFNKMKIE 183

Query: 181 KKIGGSNSSQAVPPLTNQTKQQPI--PQTVHGSTSFVSKV 216
           K+I  SN  QAVPPL N+TK QPI    T  G TSF SK+
Sbjct: 184 KQIAASN-PQAVPPLMNKTK-QPIAHTNTTSGFTSFASKI 195

BLAST of MS013312 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-17
Identity = 69/198 (34.85%), Postives = 92/198 (46.46%), Query Frame = 0

Query: 5   SHVPKFGNWDTDD-VPYTICFENAGELRAAG-VTFDPNDPDTYPPEAFPAANHRSNPSDR 64
           S+VPKFGNW+ ++ VPYT  F+ A + RA G    +PNDP+        A  H  +   +
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 65  RRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRFPP 124
               D  RR RE   R R  S  ++       S+ +  K  G  R   NN  D  S    
Sbjct: 64  PEQVDTVRRSREH-MRSREESELKQFGDAGGSSNEAANKRQG--RASQNNSYDNKSPLHK 123

Query: 125 TAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGG 184
            +    G   P P         E V  VPKFG WD  +P S DGYT IFNKV+ E+  G 
Sbjct: 124 NSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGA 183

Query: 185 SNSSQAVPPLTNQTKQQP 201
           + S  +  P T+Q+ + P
Sbjct: 184 NVSGSSRTP-THQSSRNP 197

BLAST of MS013312 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 7.3e-07
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 0

Query: 150 VPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGGSNSS 187
           +PKFG WD  DP S +G+T IFNK + EKK GG + S
Sbjct: 8   LPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDS 44

BLAST of MS013312 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0

Query: 150 VPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGGSNSS 187
           +PKFG WD  DP S +G+T IFNK + EKK GG   S
Sbjct: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

BLAST of MS013312 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0

Query: 150 VPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGGSNSS 187
           +PKFG WD  DP S +G+T IFNK + EKK GG   S
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

BLAST of MS013312 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0

Query: 150 VPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGGSNSS 187
           +PKFG WD  DP S +G+T IFNK + EKK GG   S
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142617.12.6e-11598.60RPM1-interacting protein 4-like [Momordica charantia][more]
XP_038895249.13.3e-7068.75RPM1-interacting protein 4-like isoform X2 [Benincasa hispida][more]
XP_038895247.11.3e-6967.09RPM1-interacting protein 4-like isoform X1 [Benincasa hispida][more]
KAA0054298.11.1e-6566.96RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK12335.1 RPM1-inte... [more]
XP_008458983.11.5e-6566.52PREDICTED: RPM1-interacting protein 4-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q8GYN56.4e-1634.85RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1[more]
O226331.8e-0556.76Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1CND01.3e-11598.60RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 P... [more]
A0A5A7UH425.4e-6666.96RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3C9P57.0e-6666.52RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=... [more]
A0A0A0M0M08.6e-6464.29AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G69... [more]
A0A6J1JVE98.0e-6263.64RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4... [more]
Match NameE-valueIdentityDescription
AT3G25070.14.6e-1734.85RPM1 interacting protein 4 [more]
AT2G04410.17.3e-0756.76RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.11.2e-0656.76RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.21.2e-0656.76RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.31.2e-0656.76RPM1-interacting protein 4 (RIN4) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 148..179
e-value: 3.2E-15
score: 55.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..87
NoneNo IPR availablePANTHERPTHR33159:SF49OS06G0636100 PROTEINcoord: 3..218
IPR040387RPM1-interacting protein 4/NOI4PANTHERPTHR33159RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEINcoord: 3..218

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013312.1MS013312.1mRNA