MS013312 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACACCGACGACGTACCGTACACCATCTGCTTCGAGAACGCCGGCGAACTCCGAGCCGCTGGCGTGACCTTCGATCCCAACGATCCGGACACCTATCCGCCGGAGGCCTTCCCCGCCGCGAACCATAGATCTAATCCCTCAGACCGCCGGCGGCATCACGATCACCACCGGCGGCCTCGCGAGCAGCCTAATCGCGACCGGCGAAGCTCCGGATCGGAGAAATTGAGCAGCGAGAGGAGCGGTTCGGATTACTCGCTTCTGAAGGAGCCGGGGGGGAGGAGGAAGAAGATCAATAATGGAGTGGACGGAATCAGCCGGTTTCCTCCGACGGCGGCCGGCCATGGCGGGAACCCTAACCCTAACCCTAACCCTAGGGCTCGGCGGAATGAGGGGGAAATGGTGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGATACACGGCGATTTTCAATAAAGTGAAGATGGAGAAGAAAATTGGAGGTTCGAATAGTTCTCAGGCTGTGCCGCCATTGACGAATCAGACCAAGCAACAGCCCATCCCCCAGACAGTCCATGGATCCACTTCCTTTGTATCCAAGGTAAACCCTTTNTTTTTTTTTTTTTTTTTTTTT GCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACACCGACGACGTACCGTACACCATCTGCTTCGAGAACGCCGGCGAACTCCGAGCCGCTGGCGTGACCTTCGATCCCAACGATCCGGACACCTATCCGCCGGAGGCCTTCCCCGCCGCGAACCATAGATCTAATCCCTCAGACCGCCGGCGGCATCACGATCACCACCGGCGGCCTCGCGAGCAGCCTAATCGCGACCGGCGAAGCTCCGGATCGGAGAAATTGAGCAGCGAGAGGAGCGGTTCGGATTACTCGCTTCTGAAGGAGCCGGGGGGGAGGAGGAAGAAGATCAATAATGGAGTGGACGGAATCAGCCGGTTTCCTCCGACGGCGGCCGGCCATGGCGGGAACCCTAACCCTAACCCTAACCCTAGGGCTCGGCGGAATGAGGGGGAAATGGTGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGATACACGGCGATTTTCAATAAAGTGAAGATGGAGAAGAAAATTGGAGGTTCGAATAGTTCTCAGGCTGTGCCGCCATTGACGAATCAGACCAAGCAACAGCCCATCCCCCAGACAGTCCATGGATCCACTTCCTTTGTATCCAAGGTAAACCCTTTNTTTTTTTTTTTTTTTTTTTTT GCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACACCGACGACGTACCGTACACCATCTGCTTCGAGAACGCCGGCGAACTCCGAGCCGCTGGCGTGACCTTCGATCCCAACGATCCGGACACCTATCCGCCGGAGGCCTTCCCCGCCGCGAACCATAGATCTAATCCCTCAGACCGCCGGCGGCATCACGATCACCACCGGCGGCCTCGCGAGCAGCCTAATCGCGACCGGCGAAGCTCCGGATCGGAGAAATTGAGCAGCGAGAGGAGCGGTTCGGATTACTCGCTTCTGAAGGAGCCGGGGGGGAGGAGGAAGAAGATCAATAATGGAGTGGACGGAATCAGCCGGTTTCCTCCGACGGCGGCCGGCCATGGCGGGAACCCTAACCCTAACCCTAACCCTAGGGCTCGGCGGAATGAGGGGGAAATGGTGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGATACACGGCGATTTTCAATAAAGTGAAGATGGAGAAGAAAATTGGAGGTTCGAATAGTTCTCAGGCTGTGCCGCCATTGACGAATCAGACCAAGCAACAGCCCATCCCCCAGACAGTCCATGGATCCACTTCCTTTGTATCCAAGGTAAACCCTTTNTTTTTTTTTTTTTTTTTTTTT AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPSDRRRHHDHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGISRFPPTAAGHGGNPNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKKIGGSNSSQAVPPLTNQTKQQPIPQTVHGSTSFVSKVNPXFFFFFFF Homology
BLAST of MS013312 vs. NCBI nr
Match: XP_022142617.1 (RPM1-interacting protein 4-like [Momordica charantia]) HSP 1 Score: 425.6 bits (1093), Expect = 2.6e-115 Identity = 212/215 (98.60%), Postives = 212/215 (98.60%), Query Frame = 0
BLAST of MS013312 vs. NCBI nr
Match: XP_038895249.1 (RPM1-interacting protein 4-like isoform X2 [Benincasa hispida]) HSP 1 Score: 275.8 bits (704), Expect = 3.3e-70 Identity = 154/224 (68.75%), Postives = 173/224 (77.23%), Query Frame = 0
BLAST of MS013312 vs. NCBI nr
Match: XP_038895247.1 (RPM1-interacting protein 4-like isoform X1 [Benincasa hispida]) HSP 1 Score: 273.9 bits (699), Expect = 1.3e-69 Identity = 159/237 (67.09%), Postives = 179/237 (75.53%), Query Frame = 0
BLAST of MS013312 vs. NCBI nr
Match: KAA0054298.1 (RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK12335.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa]) HSP 1 Score: 260.8 bits (665), Expect = 1.1e-65 Identity = 150/224 (66.96%), Postives = 167/224 (74.55%), Query Frame = 0
BLAST of MS013312 vs. NCBI nr
Match: XP_008458983.1 (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]) HSP 1 Score: 260.4 bits (664), Expect = 1.5e-65 Identity = 149/224 (66.52%), Postives = 167/224 (74.55%), Query Frame = 0
BLAST of MS013312 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 6.4e-16 Identity = 69/198 (34.85%), Postives = 92/198 (46.46%), Query Frame = 0
BLAST of MS013312 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05 Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0
BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A6J1CND0 (RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 PE=4 SV=1) HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115 Identity = 212/215 (98.60%), Postives = 212/215 (98.60%), Query Frame = 0
BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A5A7UH42 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001090 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 5.4e-66 Identity = 150/224 (66.96%), Postives = 167/224 (74.55%), Query Frame = 0
BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A1S3C9P5 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 7.0e-66 Identity = 149/224 (66.52%), Postives = 167/224 (74.55%), Query Frame = 0
BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A0A0M0M0 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G699040 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 8.6e-64 Identity = 144/224 (64.29%), Postives = 167/224 (74.55%), Query Frame = 0
BLAST of MS013312 vs. ExPASy TrEMBL
Match: A0A6J1JVE9 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 8.0e-62 Identity = 140/220 (63.64%), Postives = 155/220 (70.45%), Query Frame = 0
BLAST of MS013312 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 ) HSP 1 Score: 85.9 bits (211), Expect = 4.6e-17 Identity = 69/198 (34.85%), Postives = 92/198 (46.46%), Query Frame = 0
BLAST of MS013312 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 52.0 bits (123), Expect = 7.3e-07 Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 0
BLAST of MS013312 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06 Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0
BLAST of MS013312 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06 Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0
BLAST of MS013312 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06 Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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