MS013254 (gene) Bitter gourd (TR) v1

Overview


Name	MS013254
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold459: 1579926 .. 1580054 (+)
RNA-Seq Expression	MS013254
Synteny	MS013254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCGACCAGGAAAGGCTGACGACGATGAAGATGGCGGCGGGCATGGAAATGAGAACGTGAAGGAAGCTTTAACCAAGAGTTTTGATCAAGGCAAACAAATTGTGCAGGATTCCGCCAAGGCTGCCGCC

mRNA sequence

TTCCGACCAGGAAAGGCTGACGACGATGAAGATGGCGGCGGGCATGGAAATGAGAACGTGAAGGAAGCTTTAACCAAGAGTTTTGATCAAGGCAAACAAATTGTGCAGGATTCCGCCAAGGCTGCCGCC

Coding sequence (CDS)

TTCCGACCAGGAAAGGCTGACGACGATGAAGATGGCGGCGGGCATGGAAATGAGAACGTGAAGGAAGCTTTAACCAAGAGTTTTGATCAAGGCAAACAAATTGTGCAGGATTCCGCCAAGGCTGCCGCC

Protein sequence

FRPGKADDDEDGGGHGNENVKEALTKSFDQGKQIVQDSAKAAA

Homology

[Close]

BLAST of MS013254 vs. NCBI nr
Match: XP_022148210.1 (uncharacterized protein LOC111016933 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 9.4e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1   FRPGKADDDEDGGGHGNENVKEALTKSFDQGKQIVQDSAKAAA 44
           FRPGKADDDEDGGGHGNENVKEALTKSFDQGKQIVQDSAKAAA
Sbjct: 106 FRPGKADDDEDGGGHGNENVKEALTKSFDQGKQIVQDSAKAAA 148

[Close]

BLAST of MS013254 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1   FRPGKADDDEDGGGHGNENVKEALTKSFDQGKQIVQDSAKAAA 44
           FRPGKADDDEDGGGHGNENVKEALTKSFDQGKQIVQDSAKAAA
Sbjct: 106 FRPGKADDDEDGGGHGNENVKEALTKSFDQGKQIVQDSAKAAA 148

The following BLAST results are available for this feature:

BLAST of MS013254 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148210.1	9.4e-14	100.00	uncharacterized protein LOC111016933 [Momordica charantia]	[more]

BLAST of MS013254 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2A4	4.5e-14	100.00	uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of MS013254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013254.1	MS013254.1	mRNA