MS013248 (gene) Bitter gourd (TR) v1

Overview


Name	MS013248
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF1677)
Location	scaffold459: 1536192 .. 1536539 (+)
RNA-Seq Expression	MS013248
Synteny	MS013248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTGAATTGGCGAAATGCGAGTGCTGTGGGTTGACGGAGGAGTGCACGGCGGGCTACATCGAGCGGATCCGCCGCCGATTCGCCGGAAAATGGATCTGCGGTCTCTGCTCGGAGGCGGTTCAAGACGAGATTCTCAAGTCCGGCCAACTTATCACCACCGCCCAAGCCATGGCCAACCACATGAGCTTCCGCAGCAAATTCGCCGCCGCCGGACCGCCGCCGGACCCGACGCCCCATCTCATAACGGCGATGACGCAGATCCTCCGCCGTAGTCTGGACTCTCCGACAATCCGCCGCCGCTCTCTCGCTCCATCCCGCACCTCTTTCACTTCTCTCTCTGGT

mRNA sequence

ATGGAAGTTGAATTGGCGAAATGCGAGTGCTGTGGGTTGACGGAGGAGTGCACGGCGGGCTACATCGAGCGGATCCGCCGCCGATTCGCCGGAAAATGGATCTGCGGTCTCTGCTCGGAGGCGGTTCAAGACGAGATTCTCAAGTCCGGCCAACTTATCACCACCGCCCAAGCCATGGCCAACCACATGAGCTTCCGCAGCAAATTCGCCGCCGCCGGACCGCCGCCGGACCCGACGCCCCATCTCATAACGGCGATGACGCAGATCCTCCGCCGTAGTCTGGACTCTCCGACAATCCGCCGCCGCTCTCTCGCTCCATCCCGCACCTCTTTCACTTCTCTCTCTGGT

Coding sequence (CDS)

ATGGAAGTTGAATTGGCGAAATGCGAGTGCTGTGGGTTGACGGAGGAGTGCACGGCGGGCTACATCGAGCGGATCCGCCGCCGATTCGCCGGAAAATGGATCTGCGGTCTCTGCTCGGAGGCGGTTCAAGACGAGATTCTCAAGTCCGGCCAACTTATCACCACCGCCCAAGCCATGGCCAACCACATGAGCTTCCGCAGCAAATTCGCCGCCGCCGGACCGCCGCCGGACCCGACGCCCCATCTCATAACGGCGATGACGCAGATCCTCCGCCGTAGTCTGGACTCTCCGACAATCCGCCGCCGCTCTCTCGCTCCATCCCGCACCTCTTTCACTTCTCTCTCTGGT

Protein sequence

MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMANHMSFRSKFAAAGPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTSFTSLSG

Homology

[Close]

BLAST of MS013248 vs. NCBI nr
Match: XP_022148132.1 (uncharacterized protein LOC111016886 [Momordica charantia])

HSP 1 Score: 233.4 bits (594), Expect = 9.8e-58
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA
Sbjct: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60

Query: 61  NHMSFRSKFAAAGPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTSFTSLSG 117
           NHMSFRSKFAAAGPPPDPTPHLI AMTQILRRSLDSPTIRRRSLAPSRTSFTSLSG
Sbjct: 61  NHMSFRSKFAAAGPPPDPTPHLIAAMTQILRRSLDSPTIRRRSLAPSRTSFTSLSG 116

[Close]

BLAST of MS013248 vs. NCBI nr
Match: KGN58440.1 (hypothetical protein Csa_001716 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 6.0e-39
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           M+VE AKCECCGLTEECT  YIE IRRRF GKWICGLCSEAVQDEILKS ++ITT +A+A
Sbjct: 21  MDVEFAKCECCGLTEECTGAYIEGIRRRFDGKWICGLCSEAVQDEILKSHEIITTEEAIA 80

Query: 61  NHMSFRSKFAAA-GPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTS 111
            HM+FR KFAAA GPPPDPTPHLITAM QILRRSLDSP   R S A   T+
Sbjct: 81  KHMNFRKKFAAAIGPPPDPTPHLITAMRQILRRSLDSPRALRSSPATPSTA 131

[Close]

BLAST of MS013248 vs. NCBI nr
Match: XP_038901315.1 (uncharacterized protein LOC120088232 [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 1.0e-38
Identity = 86/111 (77.48%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           MEVE AKCECCGLTEECT  YIE IRRRF GKWICGLCSEAVQDEILKS +LITT +A+A
Sbjct: 21  MEVEFAKCECCGLTEECTGAYIEGIRRRFDGKWICGLCSEAVQDEILKSDELITTQEAVA 80

Query: 61  NHMSFRSKFAAA-GPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTS 111
            HMSF  KFAAA GPPPDPTPHLITAM QILRRSLDSP   R + A   T+
Sbjct: 81  KHMSFCKKFAAAVGPPPDPTPHLITAMRQILRRSLDSPRALRSTPATPTTT 131

[Close]

BLAST of MS013248 vs. NCBI nr
Match: KAA0053489.1 (hypothetical protein E6C27_scaffold190G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-38
Identity = 85/111 (76.58%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           M+VE AKCECCGLTEECT  YIE IRRRF GKWICGLCSEAVQDEILKS +LITT +A+A
Sbjct: 30  MDVEFAKCECCGLTEECTGAYIEGIRRRFDGKWICGLCSEAVQDEILKSDELITTEEAIA 89

Query: 61  NHMSFRSKFAAA-GPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTS 111
            HMSF  KFAAA GPPPDPTPHLI+AM QILRRSLDSP   R S A   T+
Sbjct: 90  KHMSFCKKFAAAVGPPPDPTPHLISAMRQILRRSLDSPRALRSSPATPTTA 140

[Close]

BLAST of MS013248 vs. NCBI nr
Match: XP_023523768.1 (uncharacterized protein LOC111787904 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 88/116 (75.86%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MEVE-LAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSG-QLITTAQA 60
           MEVE  A CECCGL+EECT  YIE +RRRF GKWICGLCSEAVQDEILKS   LITT +A
Sbjct: 6   MEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLITTEEA 65

Query: 61  MANHMSFRSKFAA-AGPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTSFTS 114
           MA HMSF  KFAA AGPPPDPTPHLITAM QILRRSLDSP    R+L   RTS TS
Sbjct: 66  MAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSLDSP----RALRSKRTSRTS 117

[Close]

BLAST of MS013248 vs. ExPASy TrEMBL
Match: A0A6J1D487 (uncharacterized protein LOC111016886 OS=Momordica charantia OX=3673 GN=LOC111016886 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA
Sbjct: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60

Query: 61  NHMSFRSKFAAAGPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTSFTSLSG 117
           NHMSFRSKFAAAGPPPDPTPHLI AMTQILRRSLDSPTIRRRSLAPSRTSFTSLSG
Sbjct: 61  NHMSFRSKFAAAGPPPDPTPHLIAAMTQILRRSLDSPTIRRRSLAPSRTSFTSLSG 116

[Close]

BLAST of MS013248 vs. ExPASy TrEMBL
Match: A0A0A0L915 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644790 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.9e-39
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           M+VE AKCECCGLTEECT  YIE IRRRF GKWICGLCSEAVQDEILKS ++ITT +A+A
Sbjct: 21  MDVEFAKCECCGLTEECTGAYIEGIRRRFDGKWICGLCSEAVQDEILKSHEIITTEEAIA 80

Query: 61  NHMSFRSKFAAA-GPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTS 111
            HM+FR KFAAA GPPPDPTPHLITAM QILRRSLDSP   R S A   T+
Sbjct: 81  KHMNFRKKFAAAIGPPPDPTPHLITAMRQILRRSLDSPRALRSSPATPSTA 131

[Close]

BLAST of MS013248 vs. ExPASy TrEMBL
Match: A0A5A7UJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00380 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 85/111 (76.58%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           M+VE AKCECCGLTEECT  YIE IRRRF GKWICGLCSEAVQDEILKS +LITT +A+A
Sbjct: 30  MDVEFAKCECCGLTEECTGAYIEGIRRRFDGKWICGLCSEAVQDEILKSDELITTEEAIA 89

Query: 61  NHMSFRSKFAAA-GPPPDPTPHLITAMTQILRRSLDSPTIRRRSLAPSRTS 111
            HMSF  KFAAA GPPPDPTPHLI+AM QILRRSLDSP   R S A   T+
Sbjct: 90  KHMSFCKKFAAAVGPPPDPTPHLISAMRQILRRSLDSPRALRSSPATPTTA 140

[Close]

BLAST of MS013248 vs. ExPASy TrEMBL
Match: A0A6M2EA23 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 77/131 (58.78%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           +EVE AKC+CCGLTEECT GYIER+R R+ GKWICGLC+EA++DEI+++ +LI+T +AMA
Sbjct: 33  IEVESAKCDCCGLTEECTPGYIERVRERYHGKWICGLCAEAIKDEIVRTERLISTEEAMA 92

Query: 61  NHMSFRSKFAAAGPPPDPTPHLITAMTQILRRSLDSP---------------TIRRRSLA 117
            HM+F  KF ++GPPPDPT HLI AM QILRRSLDSP                IR  +L 
Sbjct: 93  KHMNFCKKFVSSGPPPDPTIHLIAAMRQILRRSLDSPRGLRSTPSSPTKTKGEIRANALT 152

[Close]

BLAST of MS013248 vs. ExPASy TrEMBL
Match: A0A4U5P828 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000218820 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.3e-35
Identity = 77/131 (58.78%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
           +EVE AKC+CCGLTEECT GYIER+R R+ GKWICGLC+EA++DEI+++ +LI+T +AMA
Sbjct: 33  IEVESAKCDCCGLTEECTPGYIERVRERYHGKWICGLCAEAIKDEIVRTERLISTEEAMA 92

Query: 61  NHMSFRSKFAAAGPPPDPTPHLITAMTQILRRSLDSP---------------TIRRRSLA 117
            HM+F  KF ++GPPPDPT HLI AM QILRRSLDSP                IR  +L 
Sbjct: 93  KHMNFCKKFVSSGPPPDPTIHLIAAMRQILRRSLDSPRGLRSTPSSPTKTKGEIRAAALT 152

[Close]

BLAST of MS013248 vs. TAIR 10
Match: AT1G72510.1 (Protein of unknown function (DUF1677) )

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-32
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 2   EVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMAN 61
           E +   C+CCGLTEECT  YIE +R R+ GKWICGLCSEAV+ E++++ +L+TT +AMA 
Sbjct: 33  EPDSVTCDCCGLTEECTQSYIEMVRERYMGKWICGLCSEAVKYEVMRTKRLLTTEEAMAR 92

Query: 62  HMSFRSKFAAAGPPPDPTPHLITAMTQILRRSLDSPTIRR 102
           HM+  +KF ++ PPP+PT HLI+AM QILR+SLDSP + R
Sbjct: 93  HMNMCNKFKSSSPPPNPTGHLISAMRQILRKSLDSPRMLR 132

[Close]

BLAST of MS013248 vs. TAIR 10
Match: AT1G72510.2 (Protein of unknown function (DUF1677) )

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-32
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 2   EVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMAN 61
           E +   C+CCGLTEECT  YIE +R R+ GKWICGLCSEAV+ E++++ +L+TT +AMA 
Sbjct: 33  EPDSVTCDCCGLTEECTQSYIEMVRERYMGKWICGLCSEAVKYEVMRTKRLLTTEEAMAR 92

Query: 62  HMSFRSKFAAAGPPPDPTPHLITAMTQILRRSLDSPTIRR 102
           HM+  +KF ++ PPP+PT HLI+AM QILR+SLDSP + R
Sbjct: 93  HMNMCNKFKSSSPPPNPTGHLISAMRQILRKSLDSPRMLR 132

[Close]

BLAST of MS013248 vs. TAIR 10
Match: AT2G09970.1 (Protein of unknown function (DUF1677) )

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-25
Identity = 52/101 (51.49%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 2   EVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITT-AQAMA 61
           E++   C+CCGLT+ECT  Y E IR R+ GKWI G CSEAV+ +++++ + +TT  +AMA
Sbjct: 33  ELDSVTCDCCGLTDECTESYTEMIRERYIGKWISGFCSEAVKYKVMRTKRFLTTEEEAMA 92

Query: 62  NHMSFRSKFAAAGPPPDPTPHLITAMTQILRRSLDSPTIRR 102
            HM+  +KF ++ PP + T HLI+AM QILR+SLDSP + R
Sbjct: 93  RHMNKCNKFKSSSPPSNLTRHLISAMRQILRKSLDSPRMLR 133

[Close]

BLAST of MS013248 vs. TAIR 10
Match: AT4G14819.1 (Protein of unknown function (DUF1677) )

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-19
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1  MEVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSGQLITTAQAMA 60
          ME+E   CECCGL E+CT  YI +++  FAGKW+CGLCSEAV DE  +S +  T  +A+ 
Sbjct: 1  MEIESVTCECCGLMEDCTQHYISKVKANFAGKWLCGLCSEAVSDEFSRSSK--TVEEAVN 60

Query: 61 NHMSFRSKFAAAGPPPDPTPHLITAMTQILRR 93
           HMSF  KF A     +P   +   M Q+LRR
Sbjct: 61 AHMSFCGKFNA-----NPAELVADGMRQMLRR 85

[Close]

BLAST of MS013248 vs. TAIR 10
Match: AT1G54095.1 (Protein of unknown function (DUF1677) )

HSP 1 Score: 90.9 bits (224), Expect = 7.3e-19
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 2   EVELAKCECCGLTEECTAGYIERIRRRFAGKWICGLCSEAVQDEILKSG---QLITTAQA 61
           EV  A+CECCG+ EE TAGYIE +R  +AGK+ICGLCSEAV+ EI + G   + I   +A
Sbjct: 15  EVGFARCECCGMKEEYTAGYIESVRCLYAGKFICGLCSEAVKYEIFRCGKKQRRIGVDEA 74

Query: 62  MANHMSFRSKFAAAGPPPDPTPHLITAMTQILRRSL 95
           +A HM F S+F A+   P PT   I A+ +I +R L
Sbjct: 75  LAIHMKFCSEFVAS---PSPTVDFIFAIGEIFKRRL 107

The following BLAST results are available for this feature:

BLAST of MS013248 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148132.1	9.8e-58	99.14	uncharacterized protein LOC111016886 [Momordica charantia]	[more]
KGN58440.1	6.0e-39	76.58	hypothetical protein Csa_001716 [Cucumis sativus]	[more]
XP_038901315.1	1.0e-38	77.48	uncharacterized protein LOC120088232 [Benincasa hispida]	[more]
KAA0053489.1	3.0e-38	76.58	hypothetical protein E6C27_scaffold190G00380 [Cucumis melo var. makuwa]	[more]
XP_023523768.1	1.4e-35	75.86	uncharacterized protein LOC111787904 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS013248 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D487	4.7e-58	99.14	uncharacterized protein LOC111016886 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A0A0L915	2.9e-39	76.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644790 PE=4 SV=1	[more]
A0A5A7UJ52	1.4e-38	76.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6M2EA23	3.3e-35	58.78	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A4U5P828	4.3e-35	58.78	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000218820 PE=4 SV=1	[more]

BLAST of MS013248 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72510.1	5.8e-32	59.00	Protein of unknown function (DUF1677)	[more]
AT1G72510.2	5.8e-32	59.00	Protein of unknown function (DUF1677)	[more]
AT2G09970.1	4.0e-25	51.49	Protein of unknown function (DUF1677)	[more]
AT4G14819.1	4.3e-19	48.91	Protein of unknown function (DUF1677)	[more]
AT1G54095.1	7.3e-19	51.04	Protein of unknown function (DUF1677)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012876	Protein of unknown function DUF1677, plant	PFAM	PF07911	DUF1677	coord: 3..92 e-value: 4.9E-35 score: 119.8
IPR012876	Protein of unknown function DUF1677, plant	PANTHER	PTHR33108	OS01G0745000 PROTEIN	coord: 2..106
None	No IPR available	PANTHER	PTHR33108:SF32	DUF1677 FAMILY PROTEIN (DUF1677)	coord: 2..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013248.1	MS013248.1	mRNA