MS013200 (gene) Bitter gourd (TR) v1

Overview
NameMS013200
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold459: 1145961 .. 1146107 (+)
RNA-Seq ExpressionMS013200
SyntenyMS013200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGATCCAAAGACGAAGGTGTCGAATGATTTTGTCCGAGATACATGCAAGAAAACTAAAGAATTGAAAGAGCTTTGCGTTCCCGTGGTCAATTCAGATGCTCGTGAAGATTTGAAATCAAACTTGATTGGTCTTCTTATCATATAT

mRNA sequence

ATAGATCCAAAGACGAAGGTGTCGAATGATTTTGTCCGAGATACATGCAAGAAAACTAAAGAATTGAAAGAGCTTTGCGTTCCCGTGGTCAATTCAGATGCTCGTGAAGATTTGAAATCAAACTTGATTGGTCTTCTTATCATATAT

Coding sequence (CDS)

ATAGATCCAAAGACGAAGGTGTCGAATGATTTTGTCCGAGATACATGCAAGAAAACTAAAGAATTGAAAGAGCTTTGCGTTCCCGTGGTCAATTCAGATGCTCGTGAAGATTTGAAATCAAACTTGATTGGTCTTCTTATCATATAT

Protein sequence

IDPKTKVSNDFVRDTCKKTKELKELCVPVVNSDAREDLKSNLIGLLIIY
Homology
BLAST of MS013200 vs. NCBI nr
Match: KAG6599042.1 (hypothetical protein SDJN03_08820, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1  IDPKTKVSNDFVRDTCKKTKELKELCVPVVNSDAREDLKSNLIGLLIIY 50
          +D + +V+NDFV DTC KT+ELK+LC  V+ SD R+DLK+NL  LL I+
Sbjct: 23 LDLEMEVANDFVHDTCNKTEELKDLCNSVIGSDPRDDLKTNLTSLLTIF 71

BLAST of MS013200 vs. NCBI nr
Match: KAG6585821.1 (hypothetical protein SDJN03_18554, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 1  IDPKTKVSNDFVRDTCKKTKELKELCVPVVNSDAREDLKSNLIGLLIIY 50
          +DP+ K  +DF R TC +T ELK+LC+ V+NS+  EDLKSNL G L I+
Sbjct: 21 LDPEMKAGSDFTRATCDRTSELKDLCISVINSNPCEDLKSNLTGFLAIF 69

BLAST of MS013200 vs. NCBI nr
Match: KAG6599036.1 (hypothetical protein SDJN03_08814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 9.0e-05
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 6  KVSNDFVRDTCKKTKELKELCVPVVNSDAREDLKSNLIGLLIIY 50
          K  NDF++DTC +T++ K+LC+ V++SD REDLK N +  L+I+
Sbjct: 2  KAPNDFIQDTCNRTEDFKDLCISVIDSDPREDLKLNSMDFLVIF 45

BLAST of MS013200 vs. NCBI nr
Match: KAA0055284.1 (putative invertase inhibitor [Cucumis melo var. makuwa] >TYJ99207.1 putative invertase inhibitor [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 9  NDFVRDTCKKTKELKELCVPVVNSDAREDLKSNLIGLLIIY 50
          NDFVR TC +T ELK LC+  ++S+ R DLKSNL GLL+I+
Sbjct: 29 NDFVRHTCNRTHELKNLCLSQISSEPRNDLKSNLTGLLMIF 69

BLAST of MS013200 vs. ExPASy TrEMBL
Match: A0A5D3BJB5 (Putative invertase inhibitor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004170 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.7e-05
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 9  NDFVRDTCKKTKELKELCVPVVNSDAREDLKSNLIGLLIIY 50
          NDFVR TC +T ELK LC+  ++S+ R DLKSNL GLL+I+
Sbjct: 29 NDFVRHTCNRTHELKNLCLSQISSEPRNDLKSNLTGLLMIF 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6599042.12.2e-0657.14hypothetical protein SDJN03_08820, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585821.12.8e-0655.10hypothetical protein SDJN03_18554, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6599036.19.0e-0550.00hypothetical protein SDJN03_08814, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0055284.11.2e-0460.98putative invertase inhibitor [Cucumis melo var. makuwa] >TYJ99207.1 putative inv... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJB55.7e-0560.98Putative invertase inhibitor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013200.1MS013200.1mRNA