MS013144 (gene) Bitter gourd (TR) v1

Overview


Name	MS013144
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Integrase-type DNA-binding superfamily protein
Location	scaffold459: 608431 .. 608889 (-)
RNA-Seq Expression	MS013144
Synteny	MS013144

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATCATCAATGGCGGAACCAAACACTTCAGAATCTGAAAGTACCAGCGGCGGAGCTCCCAAATCTTCGGAATTGAAAACGGGAAATCGGAGGGATCGAGAACAGGGGGAGAAGCACCCAATTTACAGAGGCGTGCGGAAAAGAAGTTGGGGGAAATGGGTGTCGGAGATCCGGCAGCCGCGGAAGAAGTCTCGGATTTGGCTCGGGACATTTTCGACGGCGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCGCTCAGCATCAAAGGCGATTCGGCCAAGGCGGTTCTCAATTTCCCCGAGCTCGCCGGGTTGCTGCCCCGCCCGGTGTCGCTAATGCCGCGGGACATTCAGGCCGCGGCGGCGAAGGCGGCGGCGATGGTCAATTTCGATGGTTCCACTACGGCGTCGGTTTCGTCGGCGGAGTCCGATGAATTGGGGGAGATTGTGGAGTTGCCC

mRNA sequence

ACATCATCAATGGCGGAACCAAACACTTCAGAATCTGAAAGTACCAGCGGCGGAGCTCCCAAATCTTCGGAATTGAAAACGGGAAATCGGAGGGATCGAGAACAGGGGGAGAAGCACCCAATTTACAGAGGCGTGCGGAAAAGAAGTTGGGGGAAATGGGTGTCGGAGATCCGGCAGCCGCGGAAGAAGTCTCGGATTTGGCTCGGGACATTTTCGACGGCGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCGCTCAGCATCAAAGGCGATTCGGCCAAGGCGGTTCTCAATTTCCCCGAGCTCGCCGGGTTGCTGCCCCGCCCGGTGTCGCTAATGCCGCGGGACATTCAGGCCGCGGCGGCGAAGGCGGCGGCGATGGTCAATTTCGATGGTTCCACTACGGCGTCGGTTTCGTCGGCGGAGTCCGATGAATTGGGGGAGATTGTGGAGTTGCCC

Coding sequence (CDS)

ACATCATCAATGGCGGAACCAAACACTTCAGAATCTGAAAGTACCAGCGGCGGAGCTCCCAAATCTTCGGAATTGAAAACGGGAAATCGGAGGGATCGAGAACAGGGGGAGAAGCACCCAATTTACAGAGGCGTGCGGAAAAGAAGTTGGGGGAAATGGGTGTCGGAGATCCGGCAGCCGCGGAAGAAGTCTCGGATTTGGCTCGGGACATTTTCGACGGCGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCGCTCAGCATCAAAGGCGATTCGGCCAAGGCGGTTCTCAATTTCCCCGAGCTCGCCGGGTTGCTGCCCCGCCCGGTGTCGCTAATGCCGCGGGACATTCAGGCCGCGGCGGCGAAGGCGGCGGCGATGGTCAATTTCGATGGTTCCACTACGGCGTCGGTTTCGTCGGCGGAGTCCGATGAATTGGGGGAGATTGTGGAGTTGCCC

Protein sequence

TSSMAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAMVNFDGSTTASVSSAESDELGEIVELP

Homology

[Close]

BLAST of MS013144 vs. NCBI nr
Match: XP_022153639.1 (dehydration-responsive element-binding protein 3-like [Momordica charantia])

HSP 1 Score: 278.5 bits (711), Expect = 3.5e-71
Identity = 147/150 (98.00%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 63
           MAEPNTSESESTSGGAPK+SELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK
Sbjct: 1   MAEPNTSESESTSGGAPKTSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 60

Query: 64  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAK 123
           SRIWLGTFSTAEMAARAHDVAALSIKGDSAKA+LNFPELAGLLPRPVSLMPRDIQAAAAK
Sbjct: 61  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAILNFPELAGLLPRPVSLMPRDIQAAAAK 120

Query: 124 AAAMVNFDGSTTASVSSAESDELGEIVELP 154
           AAAMVNFDGSTTAS SSAESDELGEIVELP
Sbjct: 121 AAAMVNFDGSTTASFSSAESDELGEIVELP 150

[Close]

BLAST of MS013144 vs. NCBI nr
Match: XP_022955991.1 (ethylene-responsive transcription factor TINY-like [Cucurbita moschata])

HSP 1 Score: 215.3 bits (547), Expect = 3.6e-52
Identity = 122/154 (79.22%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 63
           MAEPN   SES        +ELK GN+RD    +KHPIYRGVRKRSWGKWVSEIRQPRKK
Sbjct: 1   MAEPNNWNSES------DGTELKRGNQRD----QKHPIYRGVRKRSWGKWVSEIRQPRKK 60

Query: 64  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAK 123
           SRIWLGTF+TAEMAARAHDVAALSIKGDSAKA+LNFP+LAGLLPRPVSLMPRDIQAAAAK
Sbjct: 61  SRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAK 120

Query: 124 AAAMVNFDGSTTASVSSAE----SDELGEIVELP 154
           AAAMV+FD +TTAS SS+     SDELGEIVELP
Sbjct: 121 AAAMVDFDTTTTASFSSSNYEGGSDELGEIVELP 144

[Close]

BLAST of MS013144 vs. NCBI nr
Match: KAG6581880.1 (Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018316.1 Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 3.6e-52
Identity = 122/154 (79.22%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 63
           MAEPN   SES        +ELK GN+RD    +KHPIYRGVRKRSWGKWVSEIRQPRKK
Sbjct: 1   MAEPNNWNSES------DGTELKRGNQRD----QKHPIYRGVRKRSWGKWVSEIRQPRKK 60

Query: 64  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAK 123
           SRIWLGTF+TAEMAARAHDVAALSIKGDSAKA+LNFP+LAGLLPRPVSLMPRDIQAAAAK
Sbjct: 61  SRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAK 120

Query: 124 AAAMVNFDGSTTASVSSAE----SDELGEIVELP 154
           AAAMV+FD +TTAS SS+     SDELGEIVELP
Sbjct: 121 AAAMVDFDTTTTASFSSSNYEGGSDELGEIVELP 144

[Close]

BLAST of MS013144 vs. NCBI nr
Match: XP_022979607.1 (ethylene-responsive transcription factor TINY-like [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 6.2e-52
Identity = 121/154 (78.57%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 63
           MAEPN   SES        +E+K GN+RD    +KHPIYRGVRKRSWGKWVSEIRQPRKK
Sbjct: 1   MAEPNNWNSES------DGAEMKRGNQRD----QKHPIYRGVRKRSWGKWVSEIRQPRKK 60

Query: 64  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAK 123
           SRIWLGTF+TAEMAARAHDVAALSIKGDSAKA+LNFP+LAGLLPRPVSLMPRDIQAAAAK
Sbjct: 61  SRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAK 120

Query: 124 AAAMVNFDGSTTASVSSAE----SDELGEIVELP 154
           AAAMV+FD +TTAS SS+     SDELGEIVELP
Sbjct: 121 AAAMVDFDTTTTASFSSSNDEGGSDELGEIVELP 144

[Close]

BLAST of MS013144 vs. NCBI nr
Match: XP_023528290.1 (ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-51
Identity = 121/154 (78.57%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 63
           MAEPN   SES        +ELK GN+RD    +KHPIYRGVRKRSWGKWVSEIRQPRKK
Sbjct: 1   MAEPNNWNSES------DGTELKRGNQRD----QKHPIYRGVRKRSWGKWVSEIRQPRKK 60

Query: 64  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAK 123
           SRIWLGTF+TAEMAARAHDVAALSIKGDSAKA+LNFP+LAGLLPRPVSLMPRDIQAAAAK
Sbjct: 61  SRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAK 120

Query: 124 AAAMVNFDGSTTASVSSAE----SDELGEIVELP 154
           AAAMV+FD + TAS SS+     SDELGEIVELP
Sbjct: 121 AAAMVDFDTTRTASFSSSNYEGGSDELGEIVELP 144

[Close]

BLAST of MS013144 vs. ExPASy Swiss-Prot
Match: Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.5e-37
Identity = 99/167 (59.28%), Postives = 116/167 (69.46%), Query Frame = 0


Query: 7   PNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRI 66
           PN SES+S S  + K+ + +   +R R+ G KHP+YRGVR R+WGKWVSEIR+PRKKSRI
Sbjct: 19  PN-SESDSVSDKS-KAEQSEKKTKRGRDSG-KHPVYRGVRMRNWGKWVSEIREPRKKSRI 78

Query: 67  WLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAA 126
           WLGTF T EMAARAHDVAALSIKG +  A+LNFPELA   PRPVSL PRDIQ AA KAA 
Sbjct: 79  WLGTFPTPEMAARAHDVAALSIKGTA--AILNFPELADSFPRPVSLSPRDIQTAALKAAH 138

Query: 127 M---VNFDGSTTAS-----------------VSSAESDELGEIVELP 154
           M    +F  ST++S                 +S  ES+ELGEIVELP
Sbjct: 139 MEPTTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELP 180

[Close]

BLAST of MS013144 vs. ExPASy Swiss-Prot
Match: Q9M080 (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 GN=ERF043 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-35
Identity = 87/158 (55.06%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 31  RDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFSTAEMAARAHDVAALSIKG 90
           +++++  K P+YRGVR RSWGKWVSEIR+PRKKSRIWLGTF TAEMA RAHDVAA+SIKG
Sbjct: 8   KEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKG 67

Query: 91  DSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAM----------------------- 150
            S  A+LNFPEL+ LLPRPVSL PRD++AAA KAA M                       
Sbjct: 68  TS--AILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETTTSNKMS 127

Query: 151 --------VNFDGSTTASVSSAE----SDELGEIVELP 154
                   V+F  S+ +SV+S E    SD+L EIV+LP
Sbjct: 128 ESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLP 163

[Close]

BLAST of MS013144 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-34
Identity = 90/162 (55.56%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 10  SESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLG 69
           SES  +   +    E +   ++  +   KHP+YRGVRKR+WGKWVSEIR+PRKKSRIWLG
Sbjct: 4   SESTKSWEASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLG 63

Query: 70  TFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAM-- 129
           TF + EMAARAHDVAALSIKG  A A+LNFP+LAG  PRP SL PRDIQ AA KAA M  
Sbjct: 64  TFPSPEMAARAHDVAALSIKG--ASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMET 123

Query: 130 -VNFDGSTTASVSSAE---------------SDELGEIVELP 154
             +F  S++ + SS++               S+ELGEIVELP
Sbjct: 124 SQSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELP 163

[Close]

BLAST of MS013144 vs. ExPASy Swiss-Prot
Match: Q8LBQ7 (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana OX=3702 GN=ERF034 PE=2 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 7.9e-34
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 28  GNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFSTAEMAARAHDVAALS 87
           G RR    G+KHP YRGVR RSWGKWVSEIR+PRKKSRIWLGT+ TAEMAARAHDVAAL+
Sbjct: 86  GKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALA 145

Query: 88  IKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAMVNFDGSTTASVSSAESDELG 147
           IKG +  A LNFP+LAG LPRPV+  P+DIQAAA+ AA  VN+      SV+   + E+ 
Sbjct: 146 IKGTT--AYLNFPKLAGELPRPVTNSPKDIQAAASLAA--VNWQD----SVNDVSNSEVA 201

Query: 148 EIVE 152
           EIVE
Sbjct: 206 EIVE 201

[Close]

BLAST of MS013144 vs. ExPASy Swiss-Prot
Match: Q52QU1 (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana OX=3702 GN=ERF042 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-32
Identity = 86/166 (51.81%), Postives = 105/166 (63.25%), Query Frame = 0


Query: 23  SELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFSTAEMAARAHD 82
           S+ +  +++ +E+ ++  +YRG R RSWGKWVSEIR+PRKKSRIWLGTF TAEMAARAHD
Sbjct: 7   SDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHD 66

Query: 83  VAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAM--------------- 142
           VAALSIKG S  A+LNFPELA  LPRPVSL  +DIQAAAA+AA M               
Sbjct: 67  VAALSIKGSS--AILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTP 126

Query: 143 --------------------VNFDGSTTASVSSAESDELGEIVELP 154
                                +   S+++S SS  S ELG+IVELP
Sbjct: 127 LQTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGDIVELP 170

[Close]

BLAST of MS013144 vs. ExPASy TrEMBL
Match: A0A6J1DJN5 (dehydration-responsive element-binding protein 3-like OS=Momordica charantia OX=3673 GN=LOC111021096 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 147/150 (98.00%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 63
           MAEPNTSESESTSGGAPK+SELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK
Sbjct: 1   MAEPNTSESESTSGGAPKTSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 60

Query: 64  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAK 123
           SRIWLGTFSTAEMAARAHDVAALSIKGDSAKA+LNFPELAGLLPRPVSLMPRDIQAAAAK
Sbjct: 61  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAILNFPELAGLLPRPVSLMPRDIQAAAAK 120

Query: 124 AAAMVNFDGSTTASVSSAESDELGEIVELP 154
           AAAMVNFDGSTTAS SSAESDELGEIVELP
Sbjct: 121 AAAMVNFDGSTTASFSSAESDELGEIVELP 150

[Close]

BLAST of MS013144 vs. ExPASy TrEMBL
Match: A0A6J1GVC4 (ethylene-responsive transcription factor TINY-like OS=Cucurbita moschata OX=3662 GN=LOC111457824 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 122/154 (79.22%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 63
           MAEPN   SES        +ELK GN+RD    +KHPIYRGVRKRSWGKWVSEIRQPRKK
Sbjct: 1   MAEPNNWNSES------DGTELKRGNQRD----QKHPIYRGVRKRSWGKWVSEIRQPRKK 60

Query: 64  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAK 123
           SRIWLGTF+TAEMAARAHDVAALSIKGDSAKA+LNFP+LAGLLPRPVSLMPRDIQAAAAK
Sbjct: 61  SRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAK 120

Query: 124 AAAMVNFDGSTTASVSSAE----SDELGEIVELP 154
           AAAMV+FD +TTAS SS+     SDELGEIVELP
Sbjct: 121 AAAMVDFDTTTTASFSSSNYEGGSDELGEIVELP 144

[Close]

BLAST of MS013144 vs. ExPASy TrEMBL
Match: A0A6J1IP61 (ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 GN=LOC111479284 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.0e-52
Identity = 121/154 (78.57%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKK 63
           MAEPN   SES        +E+K GN+RD    +KHPIYRGVRKRSWGKWVSEIRQPRKK
Sbjct: 1   MAEPNNWNSES------DGAEMKRGNQRD----QKHPIYRGVRKRSWGKWVSEIRQPRKK 60

Query: 64  SRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAK 123
           SRIWLGTF+TAEMAARAHDVAALSIKGDSAKA+LNFP+LAGLLPRPVSLMPRDIQAAAAK
Sbjct: 61  SRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAK 120

Query: 124 AAAMVNFDGSTTASVSSAE----SDELGEIVELP 154
           AAAMV+FD +TTAS SS+     SDELGEIVELP
Sbjct: 121 AAAMVDFDTTTTASFSSSNDEGGSDELGEIVELP 144

[Close]

BLAST of MS013144 vs. ExPASy TrEMBL
Match: A0A5D3C9I7 (Ethylene-responsive transcription factor TINY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00580 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.8e-49
Identity = 118/153 (77.12%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQ-GEKHPIYRGVRKRSWGKWVSEIRQPRK 63
           MAE N   SES      +S E+K G +RD+EQ  +KHPIYRGVR+RSWGKWVSEIRQPRK
Sbjct: 1   MAESNNWNSES------ESREMKRGKQRDQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRK 60

Query: 64  KSRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAA 123
           KSRIWLGTF+TAEMAARAHDVAALSIKGDSA+A+LNFP+LAGLLPRPVSLMPRDIQ AAA
Sbjct: 61  KSRIWLGTFTTAEMAARAHDVAALSIKGDSARAILNFPQLAGLLPRPVSLMPRDIQEAAA 120

Query: 124 KAAAMVNFDGSTTASVSSAE--SDELGEIVELP 154
           KAAAMV+FD S T S S+ E  SDELGEIVELP
Sbjct: 121 KAAAMVDFD-SETVSFSNGEEGSDELGEIVELP 146

[Close]

BLAST of MS013144 vs. ExPASy TrEMBL
Match: A0A1S3BHN5 (ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC103489964 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.8e-49
Identity = 118/153 (77.12%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 4   MAEPNTSESESTSGGAPKSSELKTGNRRDREQ-GEKHPIYRGVRKRSWGKWVSEIRQPRK 63
           MAE N   SES      +S E+K G +RD+EQ  +KHPIYRGVR+RSWGKWVSEIRQPRK
Sbjct: 1   MAESNNWNSES------ESREMKRGKQRDQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRK 60

Query: 64  KSRIWLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAA 123
           KSRIWLGTF+TAEMAARAHDVAALSIKGDSA+A+LNFP+LAGLLPRPVSLMPRDIQ AAA
Sbjct: 61  KSRIWLGTFTTAEMAARAHDVAALSIKGDSARAILNFPQLAGLLPRPVSLMPRDIQEAAA 120

Query: 124 KAAAMVNFDGSTTASVSSAE--SDELGEIVELP 154
           KAAAMV+FD S T S S+ E  SDELGEIVELP
Sbjct: 121 KAAAMVDFD-SETVSFSNGEEGSDELGEIVELP 146

[Close]

BLAST of MS013144 vs. TAIR 10
Match: AT5G11590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 3.2e-38
Identity = 99/167 (59.28%), Postives = 116/167 (69.46%), Query Frame = 0


Query: 7   PNTSESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRI 66
           PN SES+S S  + K+ + +   +R R+ G KHP+YRGVR R+WGKWVSEIR+PRKKSRI
Sbjct: 19  PN-SESDSVSDKS-KAEQSEKKTKRGRDSG-KHPVYRGVRMRNWGKWVSEIREPRKKSRI 78

Query: 67  WLGTFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAA 126
           WLGTF T EMAARAHDVAALSIKG +  A+LNFPELA   PRPVSL PRDIQ AA KAA 
Sbjct: 79  WLGTFPTPEMAARAHDVAALSIKGTA--AILNFPELADSFPRPVSLSPRDIQTAALKAAH 138

Query: 127 M---VNFDGSTTAS-----------------VSSAESDELGEIVELP 154
           M    +F  ST++S                 +S  ES+ELGEIVELP
Sbjct: 139 MEPTTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELP 180

[Close]

BLAST of MS013144 vs. TAIR 10
Match: AT4G32800.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 6.6e-36
Identity = 87/158 (55.06%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 31  RDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFSTAEMAARAHDVAALSIKG 90
           +++++  K P+YRGVR RSWGKWVSEIR+PRKKSRIWLGTF TAEMA RAHDVAA+SIKG
Sbjct: 8   KEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKG 67

Query: 91  DSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAM----------------------- 150
            S  A+LNFPEL+ LLPRPVSL PRD++AAA KAA M                       
Sbjct: 68  TS--AILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETTTSNKMS 127

Query: 151 --------VNFDGSTTASVSSAE----SDELGEIVELP 154
                   V+F  S+ +SV+S E    SD+L EIV+LP
Sbjct: 128 ESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLP 163

[Close]

BLAST of MS013144 vs. TAIR 10
Match: AT5G25810.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 90/162 (55.56%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 10  SESESTSGGAPKSSELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLG 69
           SES  +   +    E +   ++  +   KHP+YRGVRKR+WGKWVSEIR+PRKKSRIWLG
Sbjct: 4   SESTKSWEASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLG 63

Query: 70  TFSTAEMAARAHDVAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAM-- 129
           TF + EMAARAHDVAALSIKG  A A+LNFP+LAG  PRP SL PRDIQ AA KAA M  
Sbjct: 64  TFPSPEMAARAHDVAALSIKG--ASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMET 123

Query: 130 -VNFDGSTTASVSSAE---------------SDELGEIVELP 154
             +F  S++ + SS++               S+ELGEIVELP
Sbjct: 124 SQSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELP 163

[Close]

BLAST of MS013144 vs. TAIR 10
Match: AT2G44940.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 5.6e-35
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 28  GNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFSTAEMAARAHDVAALS 87
           G RR    G+KHP YRGVR RSWGKWVSEIR+PRKKSRIWLGT+ TAEMAARAHDVAAL+
Sbjct: 86  GKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALA 145

Query: 88  IKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAMVNFDGSTTASVSSAESDELG 147
           IKG +  A LNFP+LAG LPRPV+  P+DIQAAA+ AA  VN+      SV+   + E+ 
Sbjct: 146 IKGTT--AYLNFPKLAGELPRPVTNSPKDIQAAASLAA--VNWQD----SVNDVSNSEVA 201

Query: 148 EIVE 152
           EIVE
Sbjct: 206 EIVE 201

[Close]

BLAST of MS013144 vs. TAIR 10
Match: AT2G25820.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33
Identity = 86/166 (51.81%), Postives = 105/166 (63.25%), Query Frame = 0


Query: 23  SELKTGNRRDREQGEKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFSTAEMAARAHD 82
           S+ +  +++ +E+ ++  +YRG R RSWGKWVSEIR+PRKKSRIWLGTF TAEMAARAHD
Sbjct: 7   SDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHD 66

Query: 83  VAALSIKGDSAKAVLNFPELAGLLPRPVSLMPRDIQAAAAKAAAM--------------- 142
           VAALSIKG S  A+LNFPELA  LPRPVSL  +DIQAAAA+AA M               
Sbjct: 67  VAALSIKGSS--AILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTP 126

Query: 143 --------------------VNFDGSTTASVSSAESDELGEIVELP 154
                                +   S+++S SS  S ELG+IVELP
Sbjct: 127 LQTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGDIVELP 170

The following BLAST results are available for this feature:

BLAST of MS013144 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153639.1	3.5e-71	98.00	dehydration-responsive element-binding protein 3-like [Momordica charantia]	[more]
XP_022955991.1	3.6e-52	79.22	ethylene-responsive transcription factor TINY-like [Cucurbita moschata]	[more]
KAG6581880.1	3.6e-52	79.22	Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma s...	[more]
XP_022979607.1	6.2e-52	78.57	ethylene-responsive transcription factor TINY-like [Cucurbita maxima]	[more]
XP_023528290.1	1.8e-51	78.57	ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS013144 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYD3	4.5e-37	59.28	Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9M080	9.4e-35	55.06	Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q39127	1.6e-34	55.56	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LBQ7	7.9e-34	66.13	Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q52QU1	2.0e-32	51.81	Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MS013144 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJN5	1.7e-71	98.00	dehydration-responsive element-binding protein 3-like OS=Momordica charantia OX=...	[more]
A0A6J1GVC4	1.8e-52	79.22	ethylene-responsive transcription factor TINY-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1IP61	3.0e-52	78.57	ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5D3C9I7	1.8e-49	77.12	Ethylene-responsive transcription factor TINY OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BHN5	1.8e-49	77.12	ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of MS013144 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11590.1	3.2e-38	59.28	Integrase-type DNA-binding superfamily protein	[more]
AT4G32800.1	6.6e-36	55.06	Integrase-type DNA-binding superfamily protein	[more]
AT5G25810.1	1.1e-35	55.56	Integrase-type DNA-binding superfamily protein	[more]
AT2G44940.1	5.6e-35	66.13	Integrase-type DNA-binding superfamily protein	[more]
AT2G25820.1	1.4e-33	51.81	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 42..53 score: 71.36 coord: 64..80 score: 69.73
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 41..106 e-value: 7.2E-36 score: 135.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 40..90 e-value: 5.3E-14 score: 52.2
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 41..100 score: 23.103355
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 40..102 e-value: 1.56255E-32 score: 108.128
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 41..101 e-value: 2.0E-24 score: 87.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR31985	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	coord: 6..145
None	No IPR available	PANTHER	PTHR31985:SF220	DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED	coord: 6..145
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 41..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013144.1	MS013144.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity