MS013088 (gene) Bitter gourd (TR) v1

Overview


Name	MS013088
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	embryo-specific protein ATS3B-like
Location	scaffold459: 118193 .. 119858 (+)
RNA-Seq Expression	MS013088
Synteny	MS013088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTGCAAGATATCAGCCATTTCCCTCTATTTCCTCTTCGCCCTCTTCACCTTCTCAGAATGTTCTACATCCATCGTTCATCAGCTTCAGCCTCATCCTCTGGAATCCTTCAAAATCAACAATACCCAGGTCAGTAAAAGGGCTTGCTCGTTTTCCCAGAAAATTTTGAAAAAAAGGACCGTCAATGTCATGGCTGTGTTAAATCGCTCAAATTACAACCACCCATTGCTCTGTTTCAATGGATGAATTTCATTGTATGGTTTGATTTTCGGCTCTTGTGAGGAAAAATCGAAATGGGTGTTCCAGCAATCGGAGTAATTTGGTCTAAATTTTTCTGACTCCCAAAATCCTTTTGCTGATTATTGTTCTTGTTGTTACAGAATGCTGGGAGCTGTTCGTTCACAGTCACAATAAAAACAAGCTGCTCATCGCCTGTCTACACACGAGACAGGATCAGTATTTCGTTTGGGGATGCATATGGCAATCAGGTACTTTCTGATTTTGAACAAAATTTCAATCCCCAATATAATTTTTTTTTACAGTTCCATGTTGTTTATCTGCTTGAAGTATGAGTTCTGGAAATCAGGGGATTGTTAGATAAACAGTGAGCTAATTTCAACTCAAATTTTCAATTGCATCGGGTTGAGATGTTGAAATTGCTCAAACCTGGCTAACCAAGACTTTGATTGATAACATTTCATTTTTGGTCTTTTTGTTTTCTCGAATTTAAGCTTATGAACACTACTTTGAACTATTTTTATTTTGTATTTTTAAAGATTTGCAGTTAGTTGTAGTTGGTAATGATCCTGTTTTTGAAGGTATTGCGTTGGTGCTTTCTTGCTACATTTAAAAAGTTTTGGTATTGACTTTGTACACTTTTATTTTGAAGGAACAGAGACAACAAATCTTTTGTTTTCAAATTTTGTATGTAGGTTCTAAGAAGTCCCTGAAAAATGAAAAGCAAGAAACGGTGAACGTTATTAGAACAAACTCCATCTCAAAAACTCAGAAATGAGAAATAAGAACGTTACGAAACTGCCATTAGAATTCTCCCATTTTGATACTTGTGTGTTTCTAGATATAGCATGTGGTGTAGTTGTTGTAGACTTGGATTCTTCAAAAGTTGACTTATTTCCTGGTTAAGTTTTTCTTTCCTATCTCCATTATTCTCCAAATGCAACACATTCCCAAGACAACCTTACTTTCATATATTCTTGCTTAGAATTAACAATCACTTAAAGAAGTGGCTTCTCATTTCCCATTATTCTTTCTCAAAACAAACAATCCATCACCCTTGTTTCAGCTTTACTCATCTCTCCTACACACAAACCTCTCTCTATCATTTTTCTCCATTGATTTGTATATCGATTATCGTGTGGATGATTAGGTATACCTACCAAGGATCGACGATCCATCTTCAAGGGCATTCGAACGTTGCTCTACGGACAGGTTTGACATAAAGGGACCATGCACGTACCAGATATGCTATGTATACCTCTACAGGAGCGGATACGATGGATGGACAGTGGATAAAGTAACCATCTCGGGTTATAATACGAGAACAGTTACGTTTAACTACAACTCGAGGATCCCTAATGATATTTGGTTCGGGTTTAACGTATGCTCTCCGTATCAAGCTGTGGAATCCACTGCAGCAGTG

mRNA sequence

ATGGAAGCCTGCAAGATATCAGCCATTTCCCTCTATTTCCTCTTCGCCCTCTTCACCTTCTCAGAATGTTCTACATCCATCGTTCATCAGCTTCAGCCTCATCCTCTGGAATCCTTCAAAATCAACAATACCCAGAATGCTGGGAGCTGTTCGTTCACAGTCACAATAAAAACAAGCTGCTCATCGCCTGTCTACACACGAGACAGGATCAGTATTTCGTTTGGGGATGCATATGGCAATCAGGTATACCTACCAAGGATCGACGATCCATCTTCAAGGGCATTCGAACGTTGCTCTACGGACAGGTTTGACATAAAGGGACCATGCACGTACCAGATATGCTATGTATACCTCTACAGGAGCGGATACGATGGATGGACAGTGGATAAAGTAACCATCTCGGGTTATAATACGAGAACAGTTACGTTTAACTACAACTCGAGGATCCCTAATGATATTTGGTTCGGGTTTAACGTATGCTCTCCGTATCAAGCTGTGGAATCCACTGCAGCAGTG

Coding sequence (CDS)

ATGGAAGCCTGCAAGATATCAGCCATTTCCCTCTATTTCCTCTTCGCCCTCTTCACCTTCTCAGAATGTTCTACATCCATCGTTCATCAGCTTCAGCCTCATCCTCTGGAATCCTTCAAAATCAACAATACCCAGAATGCTGGGAGCTGTTCGTTCACAGTCACAATAAAAACAAGCTGCTCATCGCCTGTCTACACACGAGACAGGATCAGTATTTCGTTTGGGGATGCATATGGCAATCAGGTATACCTACCAAGGATCGACGATCCATCTTCAAGGGCATTCGAACGTTGCTCTACGGACAGGTTTGACATAAAGGGACCATGCACGTACCAGATATGCTATGTATACCTCTACAGGAGCGGATACGATGGATGGACAGTGGATAAAGTAACCATCTCGGGTTATAATACGAGAACAGTTACGTTTAACTACAACTCGAGGATCCCTAATGATATTTGGTTCGGGTTTAACGTATGCTCTCCGTATCAAGCTGTGGAATCCACTGCAGCAGTG

Protein sequence

MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSCSSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYRSGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV

Homology

[Close]

BLAST of MS013088 vs. NCBI nr
Match: XP_022153592.1 (embryo-specific protein ATS3B-like [Momordica charantia])

HSP 1 Score: 357.5 bits (916), Expect = 6.7e-95
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           MEA KISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC
Sbjct: 1   MEAXKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR
Sbjct: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV
Sbjct: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 172

[Close]

BLAST of MS013088 vs. NCBI nr
Match: XP_038883265.1 (embryo-specific protein ATS3B-like [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 1.4e-76
Identity = 139/172 (80.81%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           ME  K   ISLYFLFALF+FSE S SI HQ QP PLESFKINNTQNA SCS+TVTIKTSC
Sbjct: 1   METFKKVTISLYFLFALFSFSESSRSIPHQPQPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSP YTRD ISI+FGDAYGNQVY+PRIDDPSSRAFERCSTDR+D++GPCTYQICYVYLYR
Sbjct: 61  SSPAYTRDHISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLRGPCTYQICYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGW VDKVTIS Y+++ VTF+YNS+IPND+WFGFN CS +QAVESTAA+
Sbjct: 121 SGYDGWKVDKVTISSYSSKPVTFSYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of MS013088 vs. NCBI nr
Match: XP_008454243.1 (PREDICTED: uncharacterized protein LOC103494706 [Cucumis melo] >KAA0044438.1 embryo-specific protein ATS3A [Cucumis melo var. makuwa])

HSP 1 Score: 295.4 bits (755), Expect = 3.1e-76
Identity = 137/172 (79.65%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           ME  K + IS  FLFA+F+FSE S SI+HQ  P PLESFKINNTQNA SCS+TVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSP YTRD ISI+FGDAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGW VDKVTIS Y++R+VTFNYNS+IPND+WFGFN CS +QAVESTAA+
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of MS013088 vs. NCBI nr
Match: XP_004152204.1 (embryo-specific protein ATS3B [Cucumis sativus] >KGN52886.1 hypothetical protein Csa_014978 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 137/172 (79.65%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           ME  K + ISLYFL A+F+FS  S SI+HQ  P PLES KINNTQNAGSCS+TVTIKTSC
Sbjct: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSP YTRD ISI+FGDAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQICYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGW VDKVTIS Y++++VTFNYNS+IPND+WFGFN CS  QAVESTAA+
Sbjct: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172

[Close]

BLAST of MS013088 vs. NCBI nr
Match: TYK29565.1 (embryo-specific protein ATS3A [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.6e-75
Identity = 136/172 (79.07%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           ME  K + IS  FLFA+F+FSE S SI+HQ  P PLESFKINNTQNA SCS+TVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSP YTRD ISI+F DAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFRDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGW VDKVTIS Y++R+VTFNYNS+IPND+WFGFN CS +QAVESTAA+
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of MS013088 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-43
Identity = 82/160 (51.25%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 6   ISAISLYFLFALFTFSECSTSIVHQL---QPHPLESFKINNTQNAG-SCSFTVTIKTSCS 65
           ++++ L+F    F F   STS+        PH  ESF ++  Q  G +C++TV I TSCS
Sbjct: 1   MASVRLFFTLISFVFI-ISTSVYESKVLDPPHVAESFNVSLIQKLGNTCAYTVIISTSCS 60

Query: 66  SPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYRS 125
           S  YTRD+IS++FGD YGNQ+Y PR+DDPS++ FE+CS+D F I GPCTYQICYVYLYRS
Sbjct: 61  STRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRS 120

Query: 126 GYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCS 162
           G DGW  + V I  + ++ VTF YN+ +P  +W+GFN C+
Sbjct: 121 GPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 159

[Close]

BLAST of MS013088 vs. ExPASy Swiss-Prot
Match: Q681K2 (Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.2e-42
Identity = 83/152 (54.61%), Postives = 107/152 (70.39%), Query Frame = 0


Query: 13  FLFAL--FTFSECSTSIVHQLQPHPLESF-KINNTQNAGSCSFTVTIKTSCSSPVYTRDR 72
           FLFAL  FT    + S +   +P P++SF      +NA +CS+TV IKTSCSS  YTRD+
Sbjct: 9   FLFALCSFTLFSSARSFI-TTKPLPIDSFIPKPKLENAAACSYTVIIKTSCSSVSYTRDK 68

Query: 73  ISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYRSGYDGWTVD 132
           ISISFGD YGN+VY+ R+DDPSSR FE+CS+D + I GPC   +CY+YL R G DGW  +
Sbjct: 69  ISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPE 128

Query: 133 KVTISGYNTRTVTFNYNSRIPNDIWFGFNVCS 162
            V I G + R+VTF YN  +PN +W+GFNVC+
Sbjct: 129 NVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCN 159

[Close]

BLAST of MS013088 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-19
Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 8   AISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQ-NAGSCSFTVTIKTSCSSPVYT 67
           ++S+ FLF  F F      + H        +F ++  Q   G+C +TV + TSC SP  T
Sbjct: 5   SLSVSFLFFAFIF------VTH--------AFDLSIIQMQQGTCPYTVVVMTSCLSPEST 64

Query: 68  RDRISISFGDAYGNQVYLPRIDD--PSSRAFERCSTDRFDIKGPCTYQ-ICYVYLYRSGY 127
           RD+ISI FGDA GN+VY P++           +CST+ F ++G C    IC +Y+ R+G 
Sbjct: 65  RDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGP 124

Query: 128 DGWTVDKVTISGYNTRTVTFNYNSRIPN-DIWFGFNVCS 162
           DGW  + + I    +++V F+++  +P  + W+G N C+
Sbjct: 125 DGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNCN 149

[Close]

BLAST of MS013088 vs. ExPASy TrEMBL
Match: A0A6J1DJC6 (embryo-specific protein ATS3B-like OS=Momordica charantia OX=3673 GN=LOC111021062 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.2e-95
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           MEA KISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC
Sbjct: 1   MEAXKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR
Sbjct: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV
Sbjct: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 172

[Close]

BLAST of MS013088 vs. ExPASy TrEMBL
Match: A0A5A7TNJ2 (Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001700 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.5e-76
Identity = 137/172 (79.65%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           ME  K + IS  FLFA+F+FSE S SI+HQ  P PLESFKINNTQNA SCS+TVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSP YTRD ISI+FGDAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGW VDKVTIS Y++R+VTFNYNS+IPND+WFGFN CS +QAVESTAA+
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of MS013088 vs. ExPASy TrEMBL
Match: A0A1S3BYY1 (uncharacterized protein LOC103494706 OS=Cucumis melo OX=3656 GN=LOC103494706 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.5e-76
Identity = 137/172 (79.65%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           ME  K + IS  FLFA+F+FSE S SI+HQ  P PLESFKINNTQNA SCS+TVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSP YTRD ISI+FGDAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGW VDKVTIS Y++R+VTFNYNS+IPND+WFGFN CS +QAVESTAA+
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of MS013088 vs. ExPASy TrEMBL
Match: A0A0A0KYF3 (FBA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G004950 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.5e-76
Identity = 137/172 (79.65%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           ME  K + ISLYFL A+F+FS  S SI+HQ  P PLES KINNTQNAGSCS+TVTIKTSC
Sbjct: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSP YTRD ISI+FGDAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQICYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGW VDKVTIS Y++++VTFNYNS+IPND+WFGFN CS  QAVESTAA+
Sbjct: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172

[Close]

BLAST of MS013088 vs. ExPASy TrEMBL
Match: A0A5D3E2M7 (Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001710 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 136/172 (79.07%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   MEACKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60
           ME  K + IS  FLFA+F+FSE S SI+HQ  P PLESFKINNTQNA SCS+TVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120
           SSP YTRD ISI+F DAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFRDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 173
           SGYDGW VDKVTIS Y++R+VTFNYNS+IPND+WFGFN CS +QAVESTAA+
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of MS013088 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44
Identity = 82/160 (51.25%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 6   ISAISLYFLFALFTFSECSTSIVHQL---QPHPLESFKINNTQNAG-SCSFTVTIKTSCS 65
           ++++ L+F    F F   STS+        PH  ESF ++  Q  G +C++TV I TSCS
Sbjct: 1   MASVRLFFTLISFVFI-ISTSVYESKVLDPPHVAESFNVSLIQKLGNTCAYTVIISTSCS 60

Query: 66  SPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYRS 125
           S  YTRD+IS++FGD YGNQ+Y PR+DDPS++ FE+CS+D F I GPCTYQICYVYLYRS
Sbjct: 61  STRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRS 120

Query: 126 GYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCS 162
           G DGW  + V I  + ++ VTF YN+ +P  +W+GFN C+
Sbjct: 121 GPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 159

[Close]

BLAST of MS013088 vs. TAIR 10
Match: AT2G41475.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 172.2 bits (435), Expect = 3.7e-43
Identity = 83/152 (54.61%), Postives = 107/152 (70.39%), Query Frame = 0


Query: 13  FLFAL--FTFSECSTSIVHQLQPHPLESF-KINNTQNAGSCSFTVTIKTSCSSPVYTRDR 72
           FLFAL  FT    + S +   +P P++SF      +NA +CS+TV IKTSCSS  YTRD+
Sbjct: 9   FLFALCSFTLFSSARSFI-TTKPLPIDSFIPKPKLENAAACSYTVIIKTSCSSVSYTRDK 68

Query: 73  ISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYRSGYDGWTVD 132
           ISISFGD YGN+VY+ R+DDPSSR FE+CS+D + I GPC   +CY+YL R G DGW  +
Sbjct: 69  ISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPE 128

Query: 133 KVTISGYNTRTVTFNYNSRIPNDIWFGFNVCS 162
            V I G + R+VTF YN  +PN +W+GFNVC+
Sbjct: 129 NVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCN 159

[Close]

BLAST of MS013088 vs. TAIR 10
Match: AT5G62210.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-28
Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 0


Query: 4   CKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSCSSP 63
           C +S+I L  +        C T  +  L   PL S    +     SC +TV + TSC SP
Sbjct: 3   CSLSSILLLLVL-------CFTHPIPSLTFEPLISSL--DLHEEESCPYTVIVTTSCFSP 62

Query: 64  VYTRDRISISFGDAYGNQVYLPRIDDPSS--RAFERCSTDRFDIKGPCTYQICYVYLYRS 123
            ++RD+++I+ GDA  NQV  PR+D P S    FE+CS+D F +KG C   IC VY+YRS
Sbjct: 63  DWSRDQVTIALGDADDNQVVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIYRS 122

Query: 124 GYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCS 162
           G DGW  + V I    +++V F++N  +P +IW+G N C+
Sbjct: 123 GTDGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYCN 153

[Close]

BLAST of MS013088 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 97.8 bits (242), Expect = 8.9e-21
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 48  GSCSFTVTIKTSCSSPVYTRDRISISFGDAYGNQVYLPRIDD--PSSRAFERCSTDRFDI 107
           G+C +TV + TSC SP  TRD+ISI FGDA GN+VY P++           +CST+ F +
Sbjct: 4   GTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQV 63

Query: 108 KGPCTYQ-ICYVYLYRSGYDGWTVDKVTISGYNTRTVTFNYNSRIPN-DIWFGFNVCS 162
           +G C    IC +Y+ R+G DGW  + + I    +++V F+++  +P  + W+G N C+
Sbjct: 64  RGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNCN 121

[Close]

BLAST of MS013088 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-20
Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 8   AISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQ-NAGSCSFTVTIKTSCSSPVYT 67
           ++S+ FLF  F F      + H        +F ++  Q   G+C +TV + TSC SP  T
Sbjct: 5   SLSVSFLFFAFIF------VTH--------AFDLSIIQMQQGTCPYTVVVMTSCLSPEST 64

Query: 68  RDRISISFGDAYGNQVYLPRIDD--PSSRAFERCSTDRFDIKGPCTYQ-ICYVYLYRSGY 127
           RD+ISI FGDA GN+VY P++           +CST+ F ++G C    IC +Y+ R+G 
Sbjct: 65  RDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGP 124

Query: 128 DGWTVDKVTISGYNTRTVTFNYNSRIPN-DIWFGFNVCS 162
           DGW  + + I    +++V F+++  +P  + W+G N C+
Sbjct: 125 DGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNCN 149

The following BLAST results are available for this feature:

BLAST of MS013088 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153592.1	6.7e-95	99.42	embryo-specific protein ATS3B-like [Momordica charantia]	[more]
XP_038883265.1	1.4e-76	80.81	embryo-specific protein ATS3B-like [Benincasa hispida]	[more]
XP_008454243.1	3.1e-76	79.65	PREDICTED: uncharacterized protein LOC103494706 [Cucumis melo] >KAA0044438.1 emb...	[more]
XP_004152204.1	1.5e-75	79.65	embryo-specific protein ATS3B [Cucumis sativus] >KGN52886.1 hypothetical protein...	[more]
TYK29565.1	2.6e-75	79.07	embryo-specific protein ATS3A [Cucumis melo var. makuwa]	[more]

BLAST of MS013088 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPM5	1.6e-43	51.25	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q681K2	5.2e-42	54.61	Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1	[more]
Q9LYP6	3.6e-19	34.59	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of MS013088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJC6	3.2e-95	99.42	embryo-specific protein ATS3B-like OS=Momordica charantia OX=3673 GN=LOC11102106...	[more]
A0A5A7TNJ2	1.5e-76	79.65	Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BYY1	1.5e-76	79.65	uncharacterized protein LOC103494706 OS=Cucumis melo OX=3656 GN=LOC103494706 PE=...	[more]
A0A0A0KYF3	7.5e-76	79.65	FBA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G004950 PE=4 SV...	[more]
A0A5D3E2M7	1.3e-75	79.07	Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of MS013088 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62200.1	1.1e-44	51.25	Embryo-specific protein 3, (ATS3)	[more]
AT2G41475.1	3.7e-43	54.61	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	4.4e-28	40.00	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.2	8.9e-21	38.98	seed gene 3	[more]
AT5G07190.1	2.6e-20	34.59	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 44..160 e-value: 3.0E-47 score: 159.6
None	No IPR available	GENE3D	2.60.60.20	PLAT/LH2 domain	coord: 48..154 e-value: 2.0E-8 score: 36.2
None	No IPR available	PANTHER	PTHR31718:SF32	EMBRYO-SPECIFIC PROTEIN ATS3B	coord: 9..167
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 9..167
None	No IPR available	CDD	cd00113	PLAT	coord: 50..160 e-value: 6.90337E-26 score: 93.5576
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 48..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013088.1	MS013088.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding