MS012943 (gene) Bitter gourd (TR) v1

Overview


Name	MS012943
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
Location	scaffold38: 762222 .. 762778 (-)
RNA-Seq Expression	MS012943
Synteny	MS012943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGAGACTCAGCAATTTTGGCTCAAGGATCCTCGGCGGCGATGGCGTTGTTACTCGTTCAATCGCTTCATCTCTCCGACTTCGCTCCGGCATGGGCCTCCCCGTCGGCAAACACATCGTCCCCGATAAACCCGTAAGCCTAATCGCTAAATTTCCTTGCGAAATCAGTATCATTTGACTCAAATTTTGTGGGATTTCTTATTACTTTTTGCCCTTCTCAGCTTCATGTGAACGACGAACTGGTTTGGGACAATGGGACTAATTTGCCCGAGCCCTGTATTGATCGCATTGCGGATACGGTTGGGAAGGTAGGTGTATCGGCTCTTCTGAGGATTCTGTATTTTAATTCCTCCTCCAATTTGTATCTTTATCTTGTTGTTGTTGATGTTCTTCTCTCTTGTTCAGTACGAAGCCCTGGCTTGGTTATGTGGGGGCTTGGGATTTTTTGCATCTCTGGGATTTTTGGCTGTGTGGAACGATAAAGCCTCTAAGATACCATTTGTAAGTTTACTGAACTGGACTTATTTCGCGGATCTCTTGTGCTCCGTTCTC

mRNA sequence

ATGGCAAGGAGACTCAGCAATTTTGGCTCAAGGATCCTCGGCGGCGATGGCGTTGTTACTCGTTCAATCGCTTCATCTCTCCGACTTCGCTCCGGCATGGGCCTCCCCGTCGGCAAACACATCGTCCCCGATAAACCCCTTCATGTGAACGACGAACTGGTTTGGGACAATGGGACTAATTTGCCCGAGCCCTGTATTGATCGCATTGCGGATACGGTTGGGAAGTACGAAGCCCTGGCTTGGTTATGTGGGGGCTTGGGATTTTTTGCATCTCTGGGATTTTTGGCTGTGTGGAACGATAAAGCCTCTAAGATACCATTTGTAAGTTTACTGAACTGGACTTATTTCGCGGATCTCTTGTGCTCCGTTCTC

Coding sequence (CDS)

ATGGCAAGGAGACTCAGCAATTTTGGCTCAAGGATCCTCGGCGGCGATGGCGTTGTTACTCGTTCAATCGCTTCATCTCTCCGACTTCGCTCCGGCATGGGCCTCCCCGTCGGCAAACACATCGTCCCCGATAAACCCCTTCATGTGAACGACGAACTGGTTTGGGACAATGGGACTAATTTGCCCGAGCCCTGTATTGATCGCATTGCGGATACGGTTGGGAAGTACGAAGCCCTGGCTTGGTTATGTGGGGGCTTGGGATTTTTTGCATCTCTGGGATTTTTGGCTGTGTGGAACGATAAAGCCTCTAAGATACCATTTGTAAGTTTACTGAACTGGACTTATTTCGCGGATCTCTTGTGCTCCGTTCTC

Protein sequence

MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTNLPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFVSLLNWTYFADLLCSVL

Homology

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BLAST of MS012943 vs. NCBI nr
Match: XP_022154028.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Momordica charantia])

HSP 1 Score: 222.6 bits (566), Expect = 1.8e-54
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN
Sbjct: 1   MAGRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
           LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF
Sbjct: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 107

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BLAST of MS012943 vs. NCBI nr
Match: KAG7028381.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-51
Identity = 103/119 (86.55%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLSN GS++LGG+GVV RSIASSLRLRSGMGLPVGKHIVPDKPL VNDELVWDNGT 
Sbjct: 1   MAGRLSNLGSKVLGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPVNDELVWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFVSLLNWTYFADL 120
            PEPCIDRIADTVGKYEAL WLCGGLGFFASLG LAVWNDKAS+IPFVSLLN T   DL
Sbjct: 61  FPEPCIDRIADTVGKYEALGWLCGGLGFFASLGLLAVWNDKASRIPFVSLLNCTSLLDL 119

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BLAST of MS012943 vs. NCBI nr
Match: XP_038903151.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Benincasa hispida])

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-49
Identity = 99/107 (92.52%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLSN  SRILGG+GVV RSIASSLRLRSGMGLPVGKHIVPDKPL VNDELVWDNGT 
Sbjct: 1   MAGRLSNLSSRILGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPVNDELVWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
            PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 107

[Close]

BLAST of MS012943 vs. NCBI nr
Match: XP_022965223.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 8.9e-49
Identity = 98/107 (91.59%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLSN GSRILGG+GVV RSI SSLR RSGMGLPVGKHIVPDKPL VNDELVWDNGT 
Sbjct: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRCRSGMGLPVGKHIVPDKPLPVNDELVWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
            PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 107

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BLAST of MS012943 vs. NCBI nr
Match: KAA0041097.1 (NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 8 [Cucumis melo var. makuwa] >TYK12011.1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 8 [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 4.4e-48
Identity = 99/120 (82.50%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA +L+N GS+ILGG+GVV RSIASSLRLRSGMGLPVGKHIVPDKPL  NDELVWDNGT 
Sbjct: 1   MAGKLTNLGSKILGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPENDELVWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF-VSLLNWTYFADL 120
            PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF  SL+++  F  +
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFDKSLVHYCGFCGI 120

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BLAST of MS012943 vs. ExPASy Swiss-Prot
Match: Q9FGK0 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g47570 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.2e-45
Identity = 86/107 (80.37%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLS   SRI+GG+GVV RS+ SSLR R+GMGLPVGKHIVPDKPL VNDEL+WDNGT 
Sbjct: 1   MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
            PEPCIDRIADTVGKYEALAWL GGLGFF  LG LAV NDKASK+PF
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPF 107

[Close]

BLAST of MS012943 vs. ExPASy TrEMBL
Match: A0A6J1DJ53 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021384 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.9e-55
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN
Sbjct: 1   MAGRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
           LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF
Sbjct: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 107

[Close]

BLAST of MS012943 vs. ExPASy TrEMBL
Match: A0A6J1HN93 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111465142 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.3e-49
Identity = 98/107 (91.59%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLSN GSRILGG+GVV RSI SSLR RSGMGLPVGKHIVPDKPL VNDELVWDNGT 
Sbjct: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRCRSGMGLPVGKHIVPDKPLPVNDELVWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
            PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 107

[Close]

BLAST of MS012943 vs. ExPASy TrEMBL
Match: A0A5D3CJM3 (NADH dehydrogenase (Ubiquinone) 1 beta subcomplex subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00200 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.1e-48
Identity = 99/120 (82.50%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA +L+N GS+ILGG+GVV RSIASSLRLRSGMGLPVGKHIVPDKPL  NDELVWDNGT 
Sbjct: 1   MAGKLTNLGSKILGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPENDELVWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF-VSLLNWTYFADL 120
            PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF  SL+++  F  +
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFDKSLVHYCGFCGI 120

[Close]

BLAST of MS012943 vs. ExPASy TrEMBL
Match: A0A0A0L5J8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G021140 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.1e-48
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA +L+N GS+ILGG+GVV RSIASSLRLRSGMGLPVGKHIVPDKPL  NDELVWDNGT 
Sbjct: 1   MAGKLTNLGSKILGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPENDELVWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
            PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 107

[Close]

BLAST of MS012943 vs. ExPASy TrEMBL
Match: A0A6J1E6K0 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431068 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.1e-48
Identity = 97/107 (90.65%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLSN GSRILGG+GVV RSI SSLR RSGMGLPVGKHIVP+KPL VNDELVWDNGT 
Sbjct: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
            PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 107

[Close]

BLAST of MS012943 vs. TAIR 10
Match: AT5G47570.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-46
Identity = 86/107 (80.37%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MARRLSNFGSRILGGDGVVTRSIASSLRLRSGMGLPVGKHIVPDKPLHVNDELVWDNGTN 60
           MA RLS   SRI+GG+GVV RS+ SSLR R+GMGLPVGKHIVPDKPL VNDEL+WDNGT 
Sbjct: 1   MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF 108
            PEPCIDRIADTVGKYEALAWL GGLGFF  LG LAV NDKASK+PF
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPF 107

The following BLAST results are available for this feature:

BLAST of MS012943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154028.1	1.8e-54	99.07	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Momo...	[more]
KAG7028381.1	1.9e-51	86.55	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucu...	[more]
XP_038903151.1	4.0e-49	92.52	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Beni...	[more]
XP_022965223.1	8.9e-49	91.59	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucu...	[more]
KAA0041097.1	4.4e-48	82.50	NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 8 [Cucumis melo var. m...	[more]

BLAST of MS012943 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGK0	6.2e-45	80.37	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Ar...	[more]

BLAST of MS012943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJ53	8.9e-55	99.07	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Mo...	[more]
A0A6J1HN93	4.3e-49	91.59	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Cu...	[more]
A0A5D3CJM3	2.1e-48	82.50	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex subunit 8 OS=Cucumis melo var....	[more]
A0A0A0L5J8	2.1e-48	89.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G021140 PE=4 SV=1	[more]
A0A6J1E6K0	2.1e-48	90.65	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Cu...	[more]

BLAST of MS012943 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47570.1	4.4e-46	80.37	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038863	Putative NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	PANTHER	PTHR36401	NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 8, MITOCHONDRIAL	coord: 1..109
None	No IPR available	PANTHER	PTHR36401:SF2	BNAC02G33360D PROTEIN	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012943.1	MS012943.1	mRNA