MS012941 (gene) Bitter gourd (TR) v1

Overview


Name	MS012941
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nuclear pore complex protein
Location	scaffold38: 723931 .. 724125 (+)
RNA-Seq Expression	MS012941
Synteny	MS012941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGAATAAATATGTTCAAATTCAGCAGCTTAATCCTCAAAGTGGTGCACAAACAAATGGCTGCTTCTAGCTCCAACAGCCCTCCAAGAACTGGGCAACATGCATTTTCAACTGGATTTCCCAACCCAATATGCACCAATCCTCCAAGCACGTCCACACATAACCCTAATTTCAATGCATCTATAGGGCACGTG

mRNA sequence

AAAGGAATAAATATGTTCAAATTCAGCAGCTTAATCCTCAAAGTGGTGCACAAACAAATGGCTGCTTCTAGCTCCAACAGCCCTCCAAGAACTGGGCAACATGCATTTTCAACTGGATTTCCCAACCCAATATGCACCAATCCTCCAAGCACGTCCACACATAACCCTAATTTCAATGCATCTATAGGGCACGTG

Coding sequence (CDS)

AAAGGAATAAATATGTTCAAATTCAGCAGCTTAATCCTCAAAGTGGTGCACAAACAAATGGCTGCTTCTAGCTCCAACAGCCCTCCAAGAACTGGGCAACATGCATTTTCAACTGGATTTCCCAACCCAATATGCACCAATCCTCCAAGCACGTCCACACATAACCCTAATTTCAATGCATCTATAGGGCACGTG

Protein sequence

KGINMFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASIGHV

Homology

[Close]

BLAST of MS012941 vs. NCBI nr
Match: PON92991.1 (hypothetical protein TorRG33x02_112700 [Trema orientale])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 3  INMFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASI 62
          +NM +  SL L  V +QMAASSS+SPP TGQ  FSTG PNPICTNPPSTST +PNF A I
Sbjct: 1  MNMLRLRSLSLMAVQRQMAASSSSSPPSTGQQVFSTGSPNPICTNPPSTSTQSPNFRALI 60

Query: 63 GHV 66
          G V
Sbjct: 61 GQV 63

[Close]

BLAST of MS012941 vs. NCBI nr
Match: PON53860.1 (hypothetical protein PanWU01x14_200220 [Parasponia andersonii])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 3  INMFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASI 62
          +NM +  SL L  V +QMAASSS+SPP TGQ  FSTG PNPICTNPPSTST +PNF A I
Sbjct: 1  MNMLRLRSLSLMAVQRQMAASSSSSPPSTGQQVFSTGSPNPICTNPPSTSTQSPNFRALI 60

Query: 63 GHV 66
          G V
Sbjct: 61 GQV 63

[Close]

BLAST of MS012941 vs. NCBI nr
Match: PPR99310.1 (hypothetical protein GOBAR_AA21353 [Gossypium barbadense])

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 3  INMFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASI 62
          + M +F SL L  V +Q AASSS+ PP TGQ AFSTG PNPICTNPPSTSTH+P+ +A  
Sbjct: 1  MKMLRFRSLSLMAVQRQTAASSSSRPPSTGQQAFSTGSPNPICTNPPSTSTHSPSLSALT 60

Query: 63 GHV 66
          GHV
Sbjct: 61 GHV 63

[Close]

BLAST of MS012941 vs. NCBI nr
Match: PPD79682.1 (hypothetical protein GOBAR_DD23400 [Gossypium barbadense])

HSP 1 Score: 83.6 bits (205), Expect = 7.0e-13
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 5  MFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASIGH 64
          M +F SL L  V +Q AASSS+ PP TGQ AFSTG PNPICTNPPSTSTH+P+ +A  GH
Sbjct: 1  MLRFRSLSLMAVQRQTAASSSSRPPSTGQQAFSTGSPNPICTNPPSTSTHSPSLSALTGH 60

Query: 65 V 66
          V
Sbjct: 61 V 61

[Close]

BLAST of MS012941 vs. NCBI nr
Match: DAD47822.1 (TPA_asm: hypothetical protein HUJ06_017758 [Nelumbo nucifera])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 16 VHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASIGHV 66
          V +Q AASSSN PP TGQ  FSTGFPNP CTNPP TS HNP+F+A IGHV
Sbjct: 12 VQRQTAASSSNRPPSTGQQVFSTGFPNPTCTNPPRTSKHNPSFSALIGHV 61

[Close]

BLAST of MS012941 vs. ExPASy TrEMBL
Match: A0A2P5BYJ2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_200220 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-14
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 3  INMFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASI 62
          +NM +  SL L  V +QMAASSS+SPP TGQ  FSTG PNPICTNPPSTST +PNF A I
Sbjct: 1  MNMLRLRSLSLMAVQRQMAASSSSSPPSTGQQVFSTGSPNPICTNPPSTSTQSPNFRALI 60

Query: 63 GHV 66
          G V
Sbjct: 61 GQV 63

[Close]

BLAST of MS012941 vs. ExPASy TrEMBL
Match: A0A2P5F5B7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_112700 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-14
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 3  INMFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASI 62
          +NM +  SL L  V +QMAASSS+SPP TGQ  FSTG PNPICTNPPSTST +PNF A I
Sbjct: 1  MNMLRLRSLSLMAVQRQMAASSSSSPPSTGQQVFSTGSPNPICTNPPSTSTQSPNFRALI 60

Query: 63 GHV 66
          G V
Sbjct: 61 GQV 63

[Close]

BLAST of MS012941 vs. ExPASy TrEMBL
Match: A0A2P5X7L0 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA21353 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-13
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 3  INMFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASI 62
          + M +F SL L  V +Q AASSS+ PP TGQ AFSTG PNPICTNPPSTSTH+P+ +A  
Sbjct: 1  MKMLRFRSLSLMAVQRQTAASSSSRPPSTGQQAFSTGSPNPICTNPPSTSTHSPSLSALT 60

Query: 63 GHV 66
          GHV
Sbjct: 61 GHV 63

[Close]

BLAST of MS012941 vs. ExPASy TrEMBL
Match: A0A5N5J6X5 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028558 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-11
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 5  MFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASIGH 64
          M +  +LIL+VVHKQ AAS+S SP R GQH F+TG P+P CTNPP  ST  P+F+ SIGH
Sbjct: 1  MLRLRALILRVVHKQTAASTSTSPFRIGQHWFTTGSPSPTCTNPPRRSTQAPSFSVSIGH 60

Query: 65 V 66
          V
Sbjct: 61 V 61

[Close]

BLAST of MS012941 vs. ExPASy TrEMBL
Match: A0A6N2N0E2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS447039 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 5  MFKFSSLILKVVHKQMAASSSNSPPRTGQHAFSTGFPNPICTNPPSTSTHNPNFNASIGH 64
          M +  +LIL+VVH+Q AAS+S SP R GQH F+TG P+P CTNPP  ST  P+F+ SIGH
Sbjct: 1  MLRLRALILRVVHRQTAASTSTSPFRIGQHWFTTGSPSPTCTNPPRRSTQAPSFSVSIGH 60

Query: 65 V 66
          V
Sbjct: 61 V 61

The following BLAST results are available for this feature:

BLAST of MS012941 vs. NCBI nr


Match Name	E-value	Identity	Description
PON92991.1	1.1e-13	68.25	hypothetical protein TorRG33x02_112700 [Trema orientale]	[more]
PON53860.1	1.1e-13	68.25	hypothetical protein PanWU01x14_200220 [Parasponia andersonii]	[more]
PPR99310.1	5.4e-13	65.08	hypothetical protein GOBAR_AA21353 [Gossypium barbadense]	[more]
PPD79682.1	7.0e-13	67.21	hypothetical protein GOBAR_DD23400 [Gossypium barbadense]	[more]
DAD47822.1	1.3e-11	74.00	TPA_asm: hypothetical protein HUJ06_017758 [Nelumbo nucifera]	[more]

BLAST of MS012941 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BYJ2	5.2e-14	68.25	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_200220 PE...	[more]
A0A2P5F5B7	5.2e-14	68.25	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_112700 PE=4 SV...	[more]
A0A2P5X7L0	2.6e-13	65.08	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA21353 PE=4 SV...	[more]
A0A5N5J6X5	2.4e-11	62.30	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028558 PE=4 SV=1	[more]
A0A6N2N0E2	5.4e-11	60.66	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS447039 PE=4 SV=...	[more]

BLAST of MS012941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012941.1	MS012941.1	mRNA