MS012935 (gene) Bitter gourd (TR) v1

Overview


Name	MS012935
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	scaffold38: 643520 .. 643801 (+)
RNA-Seq Expression	MS012935
Synteny	MS012935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCTTACTTTCTAATATTTGTAATTTGGTTTTAGTGAGGTTGGATTCCTCCTAATTTTAGATCTCGAAGATTTAATGTGGTTGCAATCTTGAAGGCTCACTCCTTTGGACATATTGACAGTTCAGTTTCAGTACCAGAAAAAAATTTATTCGGGCTAGAGCTCTAAAAACTCTCAGTGAAAGTTTCCTCAAATGGAGCCCACGTGACCGGACCTTAATCACTCTAATTAACGTGACTCTTTCTCCGCCTACCTTTGGTCACACTGTTGGCTCTTCTTCC

mRNA sequence

ATTTTCTTACTTTCTAATATTTGTAATTTGGTTTTAGTGAGGTTGGATTCCAATTTTAGATCTCGAAGATTTAATGTGGTTGCAATCTTGAAGGCTCACTCCTTTGGACATATTGACAGTTCAGTTTCAGTACCAAAATTTATTCGGGCTAGAGCTCTAAAAACTCTCAGTGAAAGTTTCCTCAAATGGAGCCCACGTGACCGGACCTTAATCACTCTAATTAACGTGACTCTTTCTCCGCCTACCTTTGGTCACACTGTTGGCTCTTCTTCC

Coding sequence (CDS)

ATTTTCTTACTTTCTAATATTTGTAATTTGGTTTTAGTGAGGTTGGATTCCAATTTTAGATCTCGAAGATTTAATGTGGTTGCAATCTTGAAGGCTCACTCCTTTGGACATATTGACAGTTCAGTTTCAGTACCAAAATTTATTCGGGCTAGAGCTCTAAAAACTCTCAGTGAAAGTTTCCTCAAATGGAGCCCACGTGACCGGACCTTAATCACTCTAATTAACGTGACTCTTTCTCCGCCTACCTTTGGTCACACTGTTGGCTCTTCTTCC

Protein sequence

IFLLSNICNLVLVRLDSNFRSRRFNVVAILKAHSFGHIDSSVSVPKFIRARALKTLSESFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS

Homology

[Close]

BLAST of MS012935 vs. NCBI nr
Match: TYK11141.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLS 60
           +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK   +  L+T S
Sbjct: 59  LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHSPSSTLRTNS 118

Query: 61  E---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS 92
           E    +++W  RD+ LITLIN TLS     H VGS S
Sbjct: 119 EINPEYVQWLSRDQALITLINATLSSSALAHVVGSVS 155

[Close]

BLAST of MS012935 vs. NCBI nr
Match: TYJ97594.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLS 60
           +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T S
Sbjct: 31  LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS 90

Query: 61  E---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS 90
           E    +L+W  RD+ LITLIN TLS     H VGS
Sbjct: 91  EINPEYLQWLSRDQALITLINATLSSSALTHVVGS 125

[Close]

BLAST of MS012935 vs. NCBI nr
Match: KAA0056771.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLS 60
           +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T S
Sbjct: 31  LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS 90

Query: 61  E---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS 90
           E    +L+W  RD+ LITLIN TLS     H VGS
Sbjct: 91  EINPKYLQWLSRDQALITLINATLSSSALTHVVGS 125

[Close]

BLAST of MS012935 vs. NCBI nr
Match: KGN50818.1 (hypothetical protein Csa_018838 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 51/97 (52.58%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAH-SFGHIDSSVSV-PKFIRARALKT-- 60
           +FLLSNICN V +RLDS N+   ++ V +ILKAH  FGHID S S  PKF+ +    T  
Sbjct: 35  LFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTP 94

Query: 61  -LSESFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS 92
             S   L W  RD+ LITLIN TLSP    H VGS S
Sbjct: 95  KTSSYHLHWLSRDQALITLINATLSPSALAHVVGSPS 131

[Close]

BLAST of MS012935 vs. NCBI nr
Match: KAA0067173.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 50/97 (51.55%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLS 60
           +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T S
Sbjct: 31  LFLLSNICNLVPIRLDSTNYILWKYQVSSILKAHSFFGHIDDTLPCPPKHLSSSTLGTNS 90

Query: 61  E---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS 92
           E    +L+W  R + LITLIN TLS     H VGS S
Sbjct: 91  EINPEYLQWLSRSQALITLINATLSSSALAHVVGSVS 127

[Close]

BLAST of MS012935 vs. ExPASy TrEMBL
Match: A0A5D3CH60 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00480 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.0e-12
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLS 60
           +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK   +  L+T S
Sbjct: 59  LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHSPSSTLRTNS 118

Query: 61  E---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS 92
           E    +++W  RD+ LITLIN TLS     H VGS S
Sbjct: 119 EINPEYVQWLSRDQALITLINATLSSSALAHVVGSVS 155

[Close]

BLAST of MS012935 vs. ExPASy TrEMBL
Match: A0A5D3BEU0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00250 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLS 60
           +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T S
Sbjct: 31  LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS 90

Query: 61  E---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS 90
           E    +L+W  RD+ LITLIN TLS     H VGS
Sbjct: 91  EINPEYLQWLSRDQALITLINATLSSSALTHVVGS 125

[Close]

BLAST of MS012935 vs. ExPASy TrEMBL
Match: A0A5A7UTE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00610 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLS 60
           +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T S
Sbjct: 31  LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS 90

Query: 61  E---SFLKWSPRDRTLITLINVTLSPPTFGHTVGS 90
           E    +L+W  RD+ LITLIN TLS     H VGS
Sbjct: 91  EINPKYLQWLSRDQALITLINATLSSSALTHVVGS 125

[Close]

BLAST of MS012935 vs. ExPASy TrEMBL
Match: A0A5A7VGG0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00280 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 50/97 (51.55%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAHS-FGHIDSSVSV-PKFIRARALKTLS 60
           +FLLSNICNLV +RLDS N+   ++ V +ILKAHS FGHID ++   PK + +  L T S
Sbjct: 31  LFLLSNICNLVPIRLDSTNYILWKYQVSSILKAHSFFGHIDDTLPCPPKHLSSSTLGTNS 90

Query: 61  E---SFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS 92
           E    +L+W  R + LITLIN TLS     H VGS S
Sbjct: 91  EINPEYLQWLSRSQALITLINATLSSSALAHVVGSVS 127

[Close]

BLAST of MS012935 vs. ExPASy TrEMBL
Match: A0A0A0KMJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G272910 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 51/97 (52.58%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 1   IFLLSNICNLVLVRLDS-NFRSRRFNVVAILKAH-SFGHIDSSVSV-PKFIRARALKT-- 60
           +FLLSNICN V +RLDS N+   ++ V +ILKAH  FGHID S S  PKF+ +    T  
Sbjct: 35  LFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTP 94

Query: 61  -LSESFLKWSPRDRTLITLINVTLSPPTFGHTVGSSS 92
             S   L W  RD+ LITLIN TLSP    H VGS S
Sbjct: 95  KTSSYHLHWLSRDQALITLINATLSPSALAHVVGSPS 131

The following BLAST results are available for this feature:

BLAST of MS012935 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11141.1	1.9e-11	51.55	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYJ97594.1	2.4e-11	52.63	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0056771.1	2.4e-11	52.63	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KGN50818.1	3.2e-11	52.58	hypothetical protein Csa_018838 [Cucumis sativus]	[more]
KAA0067173.1	3.2e-11	51.55	retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon p...	[more]

BLAST of MS012935 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CH60	9.0e-12	51.55	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BEU0	1.2e-11	52.63	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UTE5	1.2e-11	52.63	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7VGG0	1.5e-11	51.55	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KMJ5	1.5e-11	52.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G272910 PE=4 SV=1	[more]

BLAST of MS012935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012935.1	MS012935.1	mRNA