MS012933 (gene) Bitter gourd (TR) v1

Overview


Name	MS012933
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein TIC 214
Location	scaffold38: 631347 .. 631466 (+)
RNA-Seq Expression	MS012933
Synteny	MS012933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTCATGATGTTCATATCGATTTATTACGTGTCTCTATATCTAGCATCAGGTAAACCTCATAAAATAACTATCATAGTTGTATTGTATCTTTTGTTTCATTCGTTTTGGAACAATCAC

mRNA sequence

CAGGTCATGATGTTCATATCGATTTATTACGTGTCTCTATATCTAGCATCAGGTAAACCTCATAAAATAACTATCATAGTTGTATTGTATCTTTTGTTTCATTCGTTTTGGAACAATCAC

Coding sequence (CDS)

CAGGTCATGATGTTCATATCGATTTATTACGTGTCTCTATATCTAGCATCAGGTAAACCTCATAAAATAACTATCATAGTTGTATTGTATCTTTTGTTTCATTCGTTTTGGAACAATCAC

Protein sequence

QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH

Homology

[Close]

BLAST of MS012933 vs. NCBI nr
Match: QCL17975.1 (hypothetical chloroplast RF19 [Geosiris aphylla])

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q++MFISIYY  L+LA G+PH IT+IV+LYLLFH FWNNH
Sbjct: 70  QLIMFISIYYAPLHLALGRPHTITVIVLLYLLFHFFWNNH 109

[Close]

BLAST of MS012933 vs. NCBI nr
Match: TXG75341.1 (hypothetical protein E1A91_1Z025200v1 [Gossypium mustelinum])

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA GKPH IT++ + YLLFH FWNNH
Sbjct: 72  QIMMFISIYYVPLHLALGKPHTITVLALPYLLFHFFWNNH 111

[Close]

BLAST of MS012933 vs. NCBI nr
Match: YP_009247880.1 (hypothetical chloroplast RF19 [Pigafetta elata] >AMW65846.1 hypothetical chloroplast RF19 [Pigafetta elata])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA G+PH IT++V+ YLLFH FWNNH
Sbjct: 68  QLMMFISIYYVPLHLALGRPHTITVLVLPYLLFHFFWNNH 107

[Close]

BLAST of MS012933 vs. NCBI nr
Match: YP_007475933.1 (hypothetical chloroplast RF19 [Calamus caryotoides] >AGE92998.1 hypothetical chloroplast RF19 [Calamus caryotoides])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA G+PH IT++V+ YLLFH FWNNH
Sbjct: 68  QLMMFISIYYVPLHLALGRPHTITVLVLPYLLFHFFWNNH 107

[Close]

BLAST of MS012933 vs. NCBI nr
Match: YP_009248576.1 (hypothetical chloroplast RF19 [Eremospatha macrocarpa] >AMW66628.1 hypothetical chloroplast RF19 [Eremospatha macrocarpa])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA G+PH IT++V+ YLLFH FWNNH
Sbjct: 68  QLMMFISIYYVPLHLALGRPHTITVLVLPYLLFHFFWNNH 107

[Close]

BLAST of MS012933 vs. ExPASy Swiss-Prot
Match: A0ZZ93 (Protein TIC 214 OS=Gossypium barbadense OX=3634 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA GKPH IT++ + YLLFH FWNNH
Sbjct: 71  QLMMFISIYYVPLHLALGKPHTITVLALPYLLFHFFWNNH 110

[Close]

BLAST of MS012933 vs. ExPASy Swiss-Prot
Match: Q2L951 (Protein TIC 214 OS=Gossypium hirsutum OX=3635 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA GKPH IT++ + YLLFH FWNNH
Sbjct: 72  QLMMFISIYYVPLHLALGKPHTITVLALPYLLFHFFWNNH 111

[Close]

BLAST of MS012933 vs. ExPASy Swiss-Prot
Match: Q09FQ2 (Protein TIC 214 OS=Nandina domestica OX=41776 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-09
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYY  L+LA G+PH IT++V+ YLLFH FWNNH
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLVLPYLLFHFFWNNH 107

[Close]

BLAST of MS012933 vs. ExPASy Swiss-Prot
Match: Q06GT8 (Protein TIC 214 OS=Drimys granadensis OX=224735 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYY  L++A G+PH IT++V+ YLLFH FWNNH
Sbjct: 68  QLMMFISIYYAPLHIALGRPHTITVLVLPYLLFHFFWNNH 107

[Close]

BLAST of MS012933 vs. ExPASy Swiss-Prot
Match: A6MN03 (Protein TIC 214 OS=Illicium oligandrum OX=145286 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q MMFISIYY  L+LA G+PH IT++V+ YLLFH FWNNH
Sbjct: 68  QFMMFISIYYAPLHLALGRPHTITVLVLPYLLFHFFWNNH 107

[Close]

BLAST of MS012933 vs. ExPASy TrEMBL
Match: A0A4P8DPG2 (Protein TIC 214 OS=Geosiris aphylla OX=153028 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q++MFISIYY  L+LA G+PH IT+IV+LYLLFH FWNNH
Sbjct: 70  QLIMFISIYYAPLHLALGRPHTITVIVLLYLLFHFFWNNH 109

[Close]

BLAST of MS012933 vs. ExPASy TrEMBL
Match: A0A5C7J1A0 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_1Z025200v1 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA GKPH IT++ + YLLFH FWNNH
Sbjct: 72  QIMMFISIYYVPLHLALGKPHTITVLALPYLLFHFFWNNH 111

[Close]

BLAST of MS012933 vs. ExPASy TrEMBL
Match: A0A143FVD8 (Hypothetical chloroplast RF19 OS=Salacca ramosiana OX=93318 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA G+PH IT++V+ YLLFH FWNNH
Sbjct: 68  QLMMFISIYYVPLHLALGRPHTITVLVLPYLLFHFFWNNH 107

[Close]

BLAST of MS012933 vs. ExPASy TrEMBL
Match: A0A143FU70 (Hypothetical chloroplast RF19 OS=Pigafetta elata OX=93304 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA G+PH IT++V+ YLLFH FWNNH
Sbjct: 78  QLMMFISIYYVPLHLALGRPHTITVLVLPYLLFHFFWNNH 117

[Close]

BLAST of MS012933 vs. ExPASy TrEMBL
Match: A0A143FV27 (Hypothetical chloroplast RF19 OS=Pigafetta elata OX=93304 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYYV L+LA G+PH IT++V+ YLLFH FWNNH
Sbjct: 68  QLMMFISIYYVPLHLALGRPHTITVLVLPYLLFHFFWNNH 107

[Close]

BLAST of MS012933 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-10
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYY  L+LA G+PH IT++ + YLLFH FWNNH
Sbjct: 72  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNH 111

[Close]

BLAST of MS012933 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-10
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFHSFWNNH 41
           Q+MMFISIYY  L+LA G+PH IT++ + YLLFH FWNNH
Sbjct: 72  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNH 111

[Close]

BLAST of MS012933 vs. TAIR 10
Match: AT2G07739.1 (Ycf1 protein )

HSP 1 Score: 56.6 bits (135), Expect = 5.3e-09
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFH-SFWNNH 41
           Q+MMFISIYY  L+LA G+PH IT++ + YLLFH  FWNNH
Sbjct: 71  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFFWNNH 111

[Close]

BLAST of MS012933 vs. TAIR 10
Match: ATMG00370.1 (Ycf1 protein )

HSP 1 Score: 56.6 bits (135), Expect = 5.3e-09
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   QVMMFISIYYVSLYLASGKPHKITIIVVLYLLFH-SFWNNH 41
           Q+MMFISIYY  L+LA G+PH IT++ + YLLFH  FWNNH
Sbjct: 71  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFFWNNH 111

The following BLAST results are available for this feature:

BLAST of MS012933 vs. NCBI nr


Match Name	E-value	Identity	Description
QCL17975.1	2.1e-07	72.50	hypothetical chloroplast RF19 [Geosiris aphylla]	[more]
TXG75341.1	2.1e-07	72.50	hypothetical protein E1A91_1Z025200v1 [Gossypium mustelinum]	[more]
YP_009247880.1	2.7e-07	72.50	hypothetical chloroplast RF19 [Pigafetta elata] >AMW65846.1 hypothetical chlorop...	[more]
YP_007475933.1	2.7e-07	72.50	hypothetical chloroplast RF19 [Calamus caryotoides] >AGE92998.1 hypothetical chl...	[more]
YP_009248576.1	2.7e-07	72.50	hypothetical chloroplast RF19 [Eremospatha macrocarpa] >AMW66628.1 hypothetical ...	[more]

BLAST of MS012933 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0ZZ93	4.6e-10	72.50	Protein TIC 214 OS=Gossypium barbadense OX=3634 GN=TIC214 PE=3 SV=1	[more]
Q2L951	4.6e-10	72.50	Protein TIC 214 OS=Gossypium hirsutum OX=3635 GN=TIC214 PE=3 SV=1	[more]
Q09FQ2	1.0e-09	70.00	Protein TIC 214 OS=Nandina domestica OX=41776 GN=TIC214 PE=3 SV=1	[more]
Q06GT8	1.8e-09	67.50	Protein TIC 214 OS=Drimys granadensis OX=224735 GN=TIC214 PE=3 SV=1	[more]
A6MN03	1.8e-09	70.00	Protein TIC 214 OS=Illicium oligandrum OX=145286 GN=TIC214 PE=3 SV=1	[more]

BLAST of MS012933 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4P8DPG2	1.0e-07	72.50	Protein TIC 214 OS=Geosiris aphylla OX=153028 GN=ycf1 PE=3 SV=1	[more]
A0A5C7J1A0	1.0e-07	72.50	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_1Z025200v1 PE=...	[more]
A0A143FVD8	1.3e-07	72.50	Hypothetical chloroplast RF19 OS=Salacca ramosiana OX=93318 GN=ycf1 PE=4 SV=1	[more]
A0A143FU70	1.3e-07	72.50	Hypothetical chloroplast RF19 OS=Pigafetta elata OX=93304 GN=ycf1 PE=4 SV=1	[more]
A0A143FV27	1.3e-07	72.50	Hypothetical chloroplast RF19 OS=Pigafetta elata OX=93304 GN=ycf1 PE=4 SV=1	[more]

BLAST of MS012933 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	2.1e-10	67.50	Ycf1 protein	[more]
ATCG01000.1	2.1e-10	67.50	Ycf1 protein	[more]
AT2G07739.1	5.3e-09	65.85	Ycf1 protein	[more]
ATMG00370.1	5.3e-09	65.85	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 1..40 e-value: 4.8E-15 score: 54.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012933.1	MS012933.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane