MS012923 (gene) Bitter gourd (TR) v1

Overview


Name	MS012923
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold38: 482892 .. 483185 (+)
RNA-Seq Expression	MS012923
Synteny	MS012923

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACTAATCCAATCTGTTTTAAGTAGTCTGCCTACCTATTATATCTCTCGGTCTTCCGAGCTCTTGCTAAAATCACCAAGGCTCTTGAACAGCTGATGAGGAATTTCTTATGGGAAGGCAATGGAAACAAAAGGCTCTCTCATCTCATCCGTTGGGACATTGTGACTCTTCCAAAAGCCTTACGGTGGTCGAATTGGCAATGCTAGACTCATCAATTCGGCTCTTCTGACTAAATGGATGTGGAGATTTTTAACAGAGAATAATAGTTTATGGATTTCATTGATTAAAGCCAAA

mRNA sequence

ACACTAATCCAATCTGTTTTAAGTAGTCTGCCTACCTATCTCTCGGTCTTCCGAGCTCTTGCTAAAATCACCAAGGCTCTTGAACAGCTGATGAGGAATTTCTTATGGGAAGGCAATGGAAACAAAAGGCTCTCTCATCTCATCCGTTGGGACATTGTGACTCTTCCAAAAGCCGGTGGTCGAATTGGCAATGCTAGACTCATCAATTCGGCTCTTCTGACTAAATGGATGTGGAGATTTTTAACAGAGAATAATAGTTTATGGATTTCATTGATTAAAGCCAAA

Coding sequence (CDS)

ACACTAATCCAATCTGTTTTAAGTAGTCTGCCTACCTATCTCTCGGTCTTCCGAGCTCTTGCTAAAATCACCAAGGCTCTTGAACAGCTGATGAGGAATTTCTTATGGGAAGGCAATGGAAACAAAAGGCTCTCTCATCTCATCCGTTGGGACATTGTGACTCTTCCAAAAGCCGGTGGTCGAATTGGCAATGCTAGACTCATCAATTCGGCTCTTCTGACTAAATGGATGTGGAGATTTTTAACAGAGAATAATAGTTTATGGATTTCATTGATTAAAGCCAAA

Protein sequence

TLIQSVLSSLPTYLSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGGRIGNARLINSALLTKWMWRFLTENNSLWISLIKAK

Homology

[Close]

BLAST of MS012923 vs. NCBI nr
Match: TYK00226.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-18
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1   TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TLIQ+ LSSLPTY LS+F+AL+ + K +E+  RNFLW+       ++L RW  +T PK  
Sbjct: 409 TLIQASLSSLPTYQLSIFKALSGVGKTIEKCWRNFLWKNKNETNCTNLARWSTITTPKCK 468

Query: 61  GRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK 96
           G +G  N ++IN+ALL KW+WRF  E +SLW+ +I AK
Sbjct: 469 GGLGITNVKVINTALLCKWLWRFQEEKDSLWVEIISAK 506

[Close]

BLAST of MS012923 vs. NCBI nr
Match: XP_028121753.1 (uncharacterized protein LOC114318966 [Camellia sinensis])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 2   LIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAGG 61
           L+QSVL S+P Y LS+F+    I + +E+LMR+FLWEG G     HL+RWD V+LPK  G
Sbjct: 532 LVQSVLGSVPIYFLSIFKIPISIARKIEKLMRDFLWEGCGEGTGFHLVRWDTVSLPKEKG 591

Query: 62  --RIGNARLINSALLTKWMWRFLTENNSLWISLIKAK 96
              IGN    N ALL KW+WRF  E++SLW S+IK+K
Sbjct: 592 GLAIGNIVARNIALLGKWLWRFSIESDSLWCSVIKSK 628

[Close]

BLAST of MS012923 vs. NCBI nr
Match: CAB4278922.1 (unnamed protein product [Prunus armeniaca] >CAB4283381.1 unnamed protein product [Prunus armeniaca] >CAB4284207.1 unnamed protein product [Prunus armeniaca] >CAB4284211.1 unnamed protein product [Prunus armeniaca] >CAB4284213.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 97.4 bits (241), Expect = 6.9e-17
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 1   TLIQSVLSSLPT-YLSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TLIQ+VLSSLPT YLS+FR  A + K LE++MRNFLWEG    R  HL+ W++V+LPK  
Sbjct: 49  TLIQAVLSSLPTYYLSLFRIPASVAKRLEKIMRNFLWEGVEEGRKDHLVNWEVVSLPKEN 108

Query: 61  G--RIGNARLINSALLTKWMWRFLTENNSLWI 90
           G   IGN R  N ALL KW+WRF     + W+
Sbjct: 109 GGLGIGNLRKRNEALLGKWLWRFQNGFPAEWL 140

[Close]

BLAST of MS012923 vs. NCBI nr
Match: XP_030497604.1 (uncharacterized protein LOC115713262 [Cannabis sativa])

HSP 1 Score: 97.1 bits (240), Expect = 9.0e-17
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 1   TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TLIQSVLSS P Y LS+F+A   +TKALE+LMR+FLWEG  +    HL+ WD V  P+  
Sbjct: 216 TLIQSVLSSFPIYFLSLFKAPKSVTKALEKLMRDFLWEGCESSGGDHLVAWDEVCRPREE 275

Query: 61  G--RIGNARLINSALLTKWMWRFLTENNSLWISLIKAK 96
           G   IGN  L N  LL KW+WRF  E NSLW  ++ ++
Sbjct: 276 GGLGIGNLELTNKGLLMKWLWRFPLEPNSLWHKVVLSR 313

[Close]

BLAST of MS012923 vs. NCBI nr
Match: KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1   TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TLI+S LSSLPTY LSVF+A +   K +E+  RNFLW+GN +    HLI W  VT  KA 
Sbjct: 636 TLIKSTLSSLPTYQLSVFQAPSLTCKNIEKFWRNFLWKGNNSSEGFHLINWTKVTKSKAE 695

Query: 61  GRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK 96
           G +G +R  + N ALLTKW+WR+L+E  +LW  LI+ K
Sbjct: 696 GGLGISRVHVTNKALLTKWLWRYLSEPKALWRRLIQCK 733

[Close]

BLAST of MS012923 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.0e-12
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1   TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TL ++VLSS+P + +S       I   L+QL R FLW     K+  HL++W  V  PK  
Sbjct: 39  TLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKE 98

Query: 61  GRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK 96
           G +G   A+ +N AL++K  WR L E NSLW  +++ K
Sbjct: 99  GGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKK 136

[Close]

BLAST of MS012923 vs. ExPASy TrEMBL
Match: A0A5D3BPP1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00200 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1   TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TLIQ+ LSSLPTY LS+F+AL+ + K +E+  RNFLW+       ++L RW  +T PK  
Sbjct: 409 TLIQASLSSLPTYQLSIFKALSGVGKTIEKCWRNFLWKNKNETNCTNLARWSTITTPKCK 468

Query: 61  GRIG--NARLINSALLTKWMWRFLTENNSLWISLIKAK 96
           G +G  N ++IN+ALL KW+WRF  E +SLW+ +I AK
Sbjct: 469 GGLGITNVKVINTALLCKWLWRFQEEKDSLWVEIISAK 506

[Close]

BLAST of MS012923 vs. ExPASy TrEMBL
Match: A0A6J5XET8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS30834 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 1   TLIQSVLSSLPT-YLSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TLIQ+VLSSLPT YLS+FR  A + K LE++MRNFLWEG    R  HL+ W++V+LPK  
Sbjct: 49  TLIQAVLSSLPTYYLSLFRIPASVAKRLEKIMRNFLWEGVEEGRKDHLVNWEVVSLPKEN 108

Query: 61  G--RIGNARLINSALLTKWMWRFLTENNSLWI 90
           G   IGN R  N ALL KW+WRF     + W+
Sbjct: 109 GGLGIGNLRKRNEALLGKWLWRFQNGFPAEWL 140

[Close]

BLAST of MS012923 vs. ExPASy TrEMBL
Match: A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-17
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1    TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
            TLIQSVLSSLP Y LS+F+A   +TKALE++MR+FLWEG+ +    HL+ WD V  P+  
Sbjct: 1495 TLIQSVLSSLPLYFLSLFKAPRSVTKALEKMMRDFLWEGSESSGGEHLVAWDEVCRPRHE 1554

Query: 61   GRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK 96
            G +G  R  L N +LL KW+WRF  E NSLW  ++ ++
Sbjct: 1555 GGLGIGRLELRNKSLLMKWLWRFPLEQNSLWHRVVVSR 1592

[Close]

BLAST of MS012923 vs. ExPASy TrEMBL
Match: A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.7e-17
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1   TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TLI+S LSSLPTY LSVF+A +   K +E+  RNFLW+GN +    HLI W  VT  KA 
Sbjct: 636 TLIKSTLSSLPTYQLSVFQAPSLTCKNIEKFWRNFLWKGNNSSEGFHLINWTKVTKSKAE 695

Query: 61  GRIGNAR--LINSALLTKWMWRFLTENNSLWISLIKAK 96
           G +G +R  + N ALLTKW+WR+L+E  +LW  LI+ K
Sbjct: 696 GGLGISRVHVTNKALLTKWLWRYLSEPKALWRRLIQCK 733

[Close]

BLAST of MS012923 vs. ExPASy TrEMBL
Match: A0A5D3BVM7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00150 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 1   TLIQSVLSSLPTY-LSVFRALAKITKALEQLMRNFLWEGNGNKRLSHLIRWDIVTLPKAG 60
           TLI+S LSSLP Y LSVF+A +   K +E+  RNFLW+GN     SHLI W  V+  K  
Sbjct: 663 TLIKSTLSSLPIYQLSVFQAPSLTCKNIEKFWRNFLWKGNNRSEGSHLINWTKVSKSKEE 722

Query: 61  GRIGNARL--INSALLTKWMWRFLTENNSLWISLIKAK 96
           G +G +RL   N ALLTKW+WR+L+E N+LW  LI+ K
Sbjct: 723 GGLGISRLHVTNKALLTKWLWRYLSEPNALWRRLIQCK 760

The following BLAST results are available for this feature:

BLAST of MS012923 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00226.1	2.8e-18	50.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
XP_028121753.1	2.4e-17	53.61	uncharacterized protein LOC114318966 [Camellia sinensis]	[more]
CAB4278922.1	6.9e-17	55.43	unnamed protein product [Prunus armeniaca] >CAB4283381.1 unnamed protein product...	[more]
XP_030497604.1	9.0e-17	53.06	uncharacterized protein LOC115713262 [Cannabis sativa]	[more]
KAA0046762.1	2.0e-16	53.06	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MS012923 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	9.0e-12	39.80	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of MS012923 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPP1	1.3e-18	50.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J5XET8	3.3e-17	55.43	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS30834 PE=4 S...	[more]
A0A803P465	4.3e-17	52.04	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A5A7TTK1	9.7e-17	53.06	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BVM7	1.3e-16	53.06	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MS012923 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012923.1	MS012923.1	mRNA