MS012913 (gene) Bitter gourd (TR) v1

Overview


Name	MS012913
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S13
Location	scaffold38: 405508 .. 406196 (+)
RNA-Seq Expression	MS012913
Synteny	MS012913

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGTTTGTGGTTGCAGAAAAGGTATTTCGGCTTCGGCATTGCCGTACAAGAGGACTCCACCCAGTTGGCTCAAGATTTCTTCTCAAGATGTAAGTGCGTTAATTTTTTAGCTGCAACTTACTTTGATTGGAACCGGCAGTTCTGGAATCTTTGTTCTGTTCTGTTCTGTTGTGCCGATTAGGTTGATGAAAACATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTGATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGCAGCAAGATCTTGCGTATTCTTAAAGCTCACGGTATTTGTTGCTCTCCTCCTCAATTGAAAATCTTATGTTGTATGAACAGTTCGAACACATCTGACGCAAAATAATGTGTATTGTTTATACCCTGTTAGTCAAGAATATATATTAAGTCTTTTCTGGTCATGTGGTAATCTAATATGTGTTTTTGATGGGTGTGATTTGGATTGTTTTCGTTAGGGCTTGCACCGGAGATTCCTGAGGATCTCTATCATTTGATTAAGAAAGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGACTCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTCGCCCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAA

mRNA sequence

TCCGTTTGTGGTTGCAGAAAAGGTATTTCGGCTTCGGCATTGCCGTACAAGAGGACTCCACCCAGTTGGCTCAAGATTTCTTCTCAAGATGTTGATGAAAACATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTGATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGCAGCAAGATCTTGCGTATTCTTAAAGCTCACGGGCTTGCACCGGAGATTCCTGAGGATCTCTATCATTTGATTAAGAAAGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGACTCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTCGCCCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAA

Coding sequence (CDS)

TCCGTTTGTGGTTGCAGAAAAGGTATTTCGGCTTCGGCATTGCCGTACAAGAGGACTCCACCCAGTTGGCTCAAGATTTCTTCTCAAGATGTTGATGAAAACATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTGATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGCAGCAAGATCTTGCGTATTCTTAAAGCTCACGGGCTTGCACCGGAGATTCCTGAGGATCTCTATCATTTGATTAAGAAAGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGACTCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTCGCCCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAA

Protein sequence

SVCGCRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Homology

[Close]

BLAST of MS012913 vs. NCBI nr
Match: BAT75920.1 (hypothetical protein VIGAN_01385700 [Vigna angularis var. angularis])

HSP 1 Score: 266.9 bits (681), Expect = 9.5e-68
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 5   CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 64
           C KGIS+SALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 37  CSKGISSSALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 96

Query: 65  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 124
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 97  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 156

Query: 125 RYYKKTKKLPPVWK 139
           RYYKKTKKLPPVWK
Sbjct: 157 RYYKKTKKLPPVWK 170

[Close]

BLAST of MS012913 vs. NCBI nr
Match: KAA8520507.1 (hypothetical protein F0562_014763 [Nyssa sinensis])

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-67
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 4   GCRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKS 63
           GC KGISASALPYKRTPPSWLKISSQDV+EN+CKFAKKGLTPSQIGVILRDSHGIAQVKS
Sbjct: 27  GCSKGISASALPYKRTPPSWLKISSQDVEENMCKFAKKGLTPSQIGVILRDSHGIAQVKS 86

Query: 64  VTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRL 123
           VTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRL
Sbjct: 87  VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 146

Query: 124 ARYYKKTKKLPPVWK 139
           ARYYKKTKKLPPVWK
Sbjct: 147 ARYYKKTKKLPPVWK 161

[Close]

BLAST of MS012913 vs. NCBI nr
Match: PPD87080.1 (hypothetical protein GOBAR_DD15985 [Gossypium barbadense])

HSP 1 Score: 265.4 bits (677), Expect = 2.8e-67
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 5   CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 64
           C KGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 50  CSKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 109

Query: 65  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 124
           TGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 110 TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA 169

Query: 125 RYYKKTKKLPPVWK 139
           RYYKKTKKLPPVWK
Sbjct: 170 RYYKKTKKLPPVWK 183

[Close]

BLAST of MS012913 vs. NCBI nr
Match: XP_010101741.2 (40S ribosomal protein S13 [Morus notabilis] >XP_022152725.1 40S ribosomal protein S13 [Momordica charantia])

HSP 1 Score: 265.0 bits (676), Expect = 3.6e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. NCBI nr
Match: EXB89496.1 (40S ribosomal protein S13 [Morus notabilis])

HSP 1 Score: 265.0 bits (676), Expect = 3.6e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGIS+SALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-66
Identity = 127/132 (96.21%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGIS+SALPY+RT PSWLKISSQDVDE ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.2e-66
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGISASALPYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.4e-59
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGIS+SALPYKRTPPSWLK ++ DV+E I K AKKG  PSQIGV+LRD HGI  VKSVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YK+TKKLPP WK
Sbjct: 129 YKRTKKLPPTWK 140

[Close]

BLAST of MS012913 vs. ExPASy TrEMBL
Match: A0A0S3R5T9 (Ribosomal_S13_N domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G385700 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.6e-68
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 5   CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 64
           C KGIS+SALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 37  CSKGISSSALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 96

Query: 65  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 124
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 97  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 156

Query: 125 RYYKKTKKLPPVWK 139
           RYYKKTKKLPPVWK
Sbjct: 157 RYYKKTKKLPPVWK 170

[Close]

BLAST of MS012913 vs. ExPASy TrEMBL
Match: A0A5J4ZTL7 (Ribosomal_S13_N domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_014763 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.0e-68
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 4   GCRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKS 63
           GC KGISASALPYKRTPPSWLKISSQDV+EN+CKFAKKGLTPSQIGVILRDSHGIAQVKS
Sbjct: 27  GCSKGISASALPYKRTPPSWLKISSQDVEENMCKFAKKGLTPSQIGVILRDSHGIAQVKS 86

Query: 64  VTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRL 123
           VTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRL
Sbjct: 87  VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 146

Query: 124 ARYYKKTKKLPPVWK 139
           ARYYKKTKKLPPVWK
Sbjct: 147 ARYYKKTKKLPPVWK 161

[Close]

BLAST of MS012913 vs. ExPASy TrEMBL
Match: A0A5D2IGQ6 (Ribosomal_S13_N domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D12G309400v1 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 5   CRKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 64
           C KGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 7   CGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 65  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 124
           TGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 125 RYYKKTKKLPPVWK 139
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. ExPASy TrEMBL
Match: A0A6J1DES0 (40S ribosomal protein S13 OS=Momordica charantia OX=3673 GN=LOC111020380 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. ExPASy TrEMBL
Match: W9RRR7 (40S ribosomal protein S13 OS=Morus notabilis OX=981085 GN=L484_004363 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 252.3 bits (643), Expect = 2.3e-67
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

[Close]

BLAST of MS012913 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 250.4 bits (638), Expect = 8.6e-67
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 7   KGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 66
           KGISASALPYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 67  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 126
           SKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 127 YKKTKKLPPVWK 139
           YKKTKKLPPVWK
Sbjct: 129 YKKTKKLPPVWK 140

The following BLAST results are available for this feature:

BLAST of MS012913 vs. NCBI nr


Match Name	E-value	Identity	Description
BAT75920.1	9.5e-68	98.51	hypothetical protein VIGAN_01385700 [Vigna angularis var. angularis]	[more]
KAA8520507.1	1.2e-67	97.04	hypothetical protein F0562_014763 [Nyssa sinensis]	[more]
PPD87080.1	2.8e-67	97.76	hypothetical protein GOBAR_DD15985 [Gossypium barbadense]	[more]
XP_010101741.2	3.6e-67	100.00	40S ribosomal protein S13 [Morus notabilis] >XP_022152725.1 40S ribosomal protei...	[more]
EXB89496.1	3.6e-67	100.00	40S ribosomal protein S13 [Morus notabilis]	[more]

BLAST of MS012913 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.2e-68	97.73	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P46298	1.1e-66	96.21	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59224	3.2e-66	94.70	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P59223	1.2e-65	93.94	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	8.4e-59	85.61	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of MS012913 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S3R5T9	4.6e-68	98.51	Ribosomal_S13_N domain-containing protein OS=Vigna angularis var. angularis OX=1...	[more]
A0A5J4ZTL7	6.0e-68	97.04	Ribosomal_S13_N domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5D2IGQ6	1.7e-67	97.76	Ribosomal_S13_N domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES...	[more]
A0A6J1DES0	1.7e-67	100.00	40S ribosomal protein S13 OS=Momordica charantia OX=3673 GN=LOC111020380 PE=3 SV...	[more]
W9RRR7	1.7e-67	100.00	40S ribosomal protein S13 OS=Morus notabilis OX=981085 GN=L484_004363 PE=3 SV=1	[more]

BLAST of MS012913 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	2.3e-67	94.70	ribosomal protein S13A	[more]
AT3G60770.1	8.6e-67	93.94	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 4..58 e-value: 8.0E-28 score: 108.4
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 6..58 e-value: 2.2E-25 score: 88.5
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 68..138 e-value: 9.2E-9 score: 45.1
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 72..132 e-value: 3.2E-14 score: 52.9
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 96..126
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 68..138 e-value: 2.79238E-25 score: 89.8698
None	No IPR available	GENE3D	1.10.287.10		coord: 81..138 e-value: 4.5E-34 score: 118.5
None	No IPR available	GENE3D	4.10.860.130		coord: 33..80 e-value: 2.5E-29 score: 102.7
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 6..138
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 6..138
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 64..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012913.1	MS012913.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome