MS012904 (gene) Bitter gourd (TR) v1

Overview


Name	MS012904
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein cornichon homolog 4-like
Location	scaffold38: 277449 .. 278656 (-)
RNA-Seq Expression	MS012904
Synteny	MS012904

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGATGTGCTTGGCGGATCTTGAGTTTGATTATATCAACCCTTATGACTCTGCTTCTCGAATAAACCAAGTGATTATGCCGGAGTTCATTGCTGTAGGAATTTTGTGCCTCTTCTATCTTTTAACAGGGCATTGGGCTATGTCACTGTTTTGTGGGCCCTACATATATTATAATGTGAGATTGTAAGTGTTTTCATTCCTCACCTCTGATTCAACTTATCTAAATCAAGTAATGCCTTTTTACAATTTTCTTGCACACAGCGTGATTTGTGTTGTATTGTACTTTTCAACTAAGAAGCACATGATTTTGAACAGTTTGAATAGATGGGATATTTGCTTCTGATTTTGACCATTTAGAAATACCAGAGCCTCCTGTCGATTTGACACAACTTAAGAAGTACTTGATGTTAGATTTGATGATTATCCTCAAAGCTAGTTCTACCTTGTAAGGGTAGGCTTTCAGAGCATAGGATAGATCATATTGGTATCTGGTTGTAAGGTATGGCTACATACAAATTGTAGTTTGGATGTGACAGGAGACCGTATTTGGAGAATACGTATTGATTTTAATTAAGTTTCTAATGCAATTTGTCGGACTAAGGAATATTAACTGCCTTTGATGTGTTGTATAAGGTAGTGGGGTTGGAGCTTGCTTGTTTCCATCTCAGAAAATAGATGTGGGTTATTATTCTGAGCTTGCTTGTATAGAGCAGTAGTAGAACTTCCTTGGTTGAACAACTAATTTACCATGCATTGCAGTCATCACATTCTGTATTTAAAGATATTCTTGATTCTTAAGGAGGACCAGAATTAAGGAATCCCAAATTTTAAGTTGTTTGAAATTGGACTATGACACTGTATGATTGAGAGATAAAGGCACCATTCAAAACATTTGAGGCAGAATCCTGCTTTGGCCTAAAGTCGAGACGTATCATATGCTAGGAAAAGTAAGCATTCTGAAAATTATGATATTTTGATGTATTACCTCCAGCTTCTGTGTCGTGGCCATATTTGTTACATTCTTGCAGCTCCACAGAATATCATCTGTATATCACTATACTCATTTTGTCTTTTCTTGTGATCAGGTACCTACGAAGACAGCATCTGATAGATGTTACAGAGATATTCAATATGCTAAATTGGGAAAAGAAACAACGGATTTTCAAACTAGTCTATCTAGTTTTCCTCCTCTTCCTCTCTATATTTTGG

mRNA sequence

CTGATGTGCTTGGCGGATCTTGAGTTTGATTATATCAACCCTTATGACTCTGCTTCTCGAATAAACCAAGTGATTATGCCGGAGTTCATTGCTGTAGGAATTTTGTGCCTCTTCTATCTTTTAACAGGGCATTGGGCTATGTCACTGTTTTGTGGGCCCTACATATATTATAATGTGAGATTGTACCTACGAAGACAGCATCTGATAGATGTTACAGAGATATTCAATATGCTAAATTGGGAAAAGAAACAACGGATTTTCAAACTAGTCTATCTAGTTTTCCTCCTCTTCCTCTCTATATTTTGG

Coding sequence (CDS)

CTGATGTGCTTGGCGGATCTTGAGTTTGATTATATCAACCCTTATGACTCTGCTTCTCGAATAAACCAAGTGATTATGCCGGAGTTCATTGCTGTAGGAATTTTGTGCCTCTTCTATCTTTTAACAGGGCATTGGGCTATGTCACTGTTTTGTGGGCCCTACATATATTATAATGTGAGATTGTACCTACGAAGACAGCATCTGATAGATGTTACAGAGATATTCAATATGCTAAATTGGGAAAAGAAACAACGGATTTTCAAACTAGTCTATCTAGTTTTCCTCCTCTTCCTCTCTATATTTTGG

Protein sequence

LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVRLYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW

Homology

[Close]

BLAST of MS012904 vs. NCBI nr
Match: XP_022152805.1 (protein cornichon homolog 4-like [Momordica charantia] >XP_022152806.1 protein cornichon homolog 4-like [Momordica charantia])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRINQVIMPEF AVGILCLFYLLTGHWAMSLFCGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINQVIMPEFFAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LYLRRQHLIDVTEIFNMLNWEKKQR FKLVYLVFLLFLSIFW
Sbjct: 85  LYLRRQHLIDVTEIFNMLNWEKKQRXFKLVYLVFLLFLSIFW 126

[Close]

BLAST of MS012904 vs. NCBI nr
Match: XP_038876883.1 (protein cornichon homolog 4-like [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 4.0e-47
Identity = 92/102 (90.20%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRIN+VI+PEF++VG+LCLFYLLTGHW MS+ CGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINKVILPEFVSVGVLCLFYLLTGHWGMSMICGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LYLRRQHLIDVTEIFNMLNWEKKQR+FKL YLVFLLFLSIFW
Sbjct: 85  LYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLLFLSIFW 126

[Close]

BLAST of MS012904 vs. NCBI nr
Match: XP_022965215.1 (protein cornichon homolog 4-like [Cucurbita maxima] >XP_022965216.1 protein cornichon homolog 4-like [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 2.0e-46
Identity = 90/102 (88.24%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRIN+V+MPEFIA+G+LCLFYLLTGHW MS+ CGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINKVVMPEFIAIGVLCLFYLLTGHWGMSMLCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LYLRRQ+L+DVTEIFNMLNWEKK+R+FKL YLVFLLFLSIFW
Sbjct: 85  LYLRRQYLVDVTEIFNMLNWEKKRRLFKLAYLVFLLFLSIFW 126

[Close]

BLAST of MS012904 vs. NCBI nr
Match: XP_023005595.1 (protein cornichon homolog 4-like [Cucurbita maxima] >KAG6596832.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.3 bits (495), Expect = 2.6e-46
Identity = 90/102 (88.24%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRIN+VI PEFI++G+LCLFYLLTGHW MS+ CGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           +YLRRQHLIDVTEIFNMLNWEKKQR+FKL YLVFLLFLS+FW
Sbjct: 85  MYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLLFLSVFW 126

[Close]

BLAST of MS012904 vs. NCBI nr
Match: XP_022923576.1 (protein cornichon homolog 4-like [Cucurbita moschata] >XP_022923577.1 protein cornichon homolog 4-like [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 2.6e-46
Identity = 89/102 (87.25%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRIN+V+MPEF+A+G+LCLFYLLTGHW MS+ CGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINKVVMPEFVAIGVLCLFYLLTGHWGMSMLCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LYLRRQ+L+DVTEIFNMLNWEKK+R+FKL YLVFLLFLSIFW
Sbjct: 85  LYLRRQYLVDVTEIFNMLNWEKKRRLFKLAYLVFLLFLSIFW 126

[Close]

BLAST of MS012904 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-41
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           L+CLADLEFDYINPYDSASRIN V++PEFI  G+LC+FYLLTGHW M+L C PY+YYN  
Sbjct: 17  LVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFH 76

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LY +RQHL+DVTEIFN+LNWEKK+R+FKL Y+V  LFL+IFW
Sbjct: 77  LYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 118

[Close]

BLAST of MS012904 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-41
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           L+CLADLEFDYINPYDSASRIN V++PEFI  G+LC+FYLLTGHW M+L C PY+YYN  
Sbjct: 25  LVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFH 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LY +RQHL+DVTEIFN+LNWEKK+R+FKL Y+V  LFL+IFW
Sbjct: 85  LYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

[Close]

BLAST of MS012904 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.9e-38
Identity = 72/102 (70.59%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           L+ LADLEFDYINPYDSASRIN V++PE I  G LC+FYL+TGHW M+L C PY+YYN  
Sbjct: 25  LISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYNFH 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LY R+QHLIDVTEIFN+L+WEKK+R+FKL Y++  LFL+IFW
Sbjct: 85  LYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

[Close]

BLAST of MS012904 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-29
Identity = 53/102 (51.96%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           L CLADLEFD INPYD +SRIN++++PEF   G+LCL+Y+LTGHW M++   P+++YN+R
Sbjct: 25  LTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILTGHWFMAVLSLPHLFYNIR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LY++R+HL DVTE++N   WE+K+R++K+ ++   +F++ +W
Sbjct: 85  LYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSIFITTYW 126

[Close]

BLAST of MS012904 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-21
Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           ++CL DLE DY+NP+++++RIN++++PEFI  G LCL +LLT HW   L   P   Y+  
Sbjct: 26  VICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLFLLTWHWVFFLVAVPVTVYHAM 85

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIF 102
           LY  R++LIDVTE+F  +++EKK R  KL + VFL  + +F
Sbjct: 86  LYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIMVVF 126

[Close]

BLAST of MS012904 vs. ExPASy TrEMBL
Match: A0A6J1DIV4 (protein cornichon homolog 4-like OS=Momordica charantia OX=3673 GN=LOC111020433 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.1e-50
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRINQVIMPEF AVGILCLFYLLTGHWAMSLFCGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINQVIMPEFFAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LYLRRQHLIDVTEIFNMLNWEKKQR FKLVYLVFLLFLSIFW
Sbjct: 85  LYLRRQHLIDVTEIFNMLNWEKKQRXFKLVYLVFLLFLSIFW 126

[Close]

BLAST of MS012904 vs. ExPASy TrEMBL
Match: A0A6J1HL36 (protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111465137 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.6e-47
Identity = 90/102 (88.24%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRIN+V+MPEFIA+G+LCLFYLLTGHW MS+ CGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINKVVMPEFIAIGVLCLFYLLTGHWGMSMLCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LYLRRQ+L+DVTEIFNMLNWEKK+R+FKL YLVFLLFLSIFW
Sbjct: 85  LYLRRQYLVDVTEIFNMLNWEKKRRLFKLAYLVFLLFLSIFW 126

[Close]

BLAST of MS012904 vs. ExPASy TrEMBL
Match: A0A6J1E6H8 (protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111431220 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 89/102 (87.25%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRIN+V+MPEF+A+G+LCLFYLLTGHW MS+ CGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINKVVMPEFVAIGVLCLFYLLTGHWGMSMLCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LYLRRQ+L+DVTEIFNMLNWEKK+R+FKL YLVFLLFLSIFW
Sbjct: 85  LYLRRQYLVDVTEIFNMLNWEKKRRLFKLAYLVFLLFLSIFW 126

[Close]

BLAST of MS012904 vs. ExPASy TrEMBL
Match: A0A6J1KXU1 (protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111498534 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 90/102 (88.24%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRIN+VI PEFI++G+LCLFYLLTGHW MS+ CGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           +YLRRQHLIDVTEIFNMLNWEKKQR+FKL YLVFLLFLS+FW
Sbjct: 85  MYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLLFLSVFW 126

[Close]

BLAST of MS012904 vs. ExPASy TrEMBL
Match: A0A1S3BLR3 (protein cornichon homolog 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490940 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.7e-46
Identity = 90/102 (88.24%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           LMCLADLEFDYINPYDSASRIN+VIMPEF+A+G+LCLFYLLTGHW MS+ CGPYIYYNVR
Sbjct: 25  LMCLADLEFDYINPYDSASRINKVIMPEFVAMGVLCLFYLLTGHWGMSMLCGPYIYYNVR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LYLRRQ+L+DVTEIFNMLNWEKKQR+FKL YLV LLFLSIFW
Sbjct: 85  LYLRRQYLVDVTEIFNMLNWEKKQRLFKLAYLVVLLFLSIFW 126

[Close]

BLAST of MS012904 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-42
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           L+CLADLEFDYINPYDSASRIN V++PEFI  G+LC+FYLLTGHW M+L C PY+YYN  
Sbjct: 17  LVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFH 76

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LY +RQHL+DVTEIFN+LNWEKK+R+FKL Y+V  LFL+IFW
Sbjct: 77  LYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 118

[Close]

BLAST of MS012904 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-42
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           L+CLADLEFDYINPYDSASRIN V++PEFI  G+LC+FYLLTGHW M+L C PY+YYN  
Sbjct: 25  LVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFH 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LY +RQHL+DVTEIFN+LNWEKK+R+FKL Y+V  LFL+IFW
Sbjct: 85  LYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

[Close]

BLAST of MS012904 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 157.5 bits (397), Expect = 5.6e-39
Identity = 72/102 (70.59%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           L+ LADLEFDYINPYDSASRIN V++PE I  G LC+FYL+TGHW M+L C PY+YYN  
Sbjct: 25  LISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYNFH 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LY R+QHLIDVTEIFN+L+WEKK+R+FKL Y++  LFL+IFW
Sbjct: 85  LYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

[Close]

BLAST of MS012904 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-30
Identity = 53/102 (51.96%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           L CLADLEFD INPYD +SRIN++++PEF   G+LCL+Y+LTGHW M++   P+++YN+R
Sbjct: 25  LTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILTGHWFMAVLSLPHLFYNIR 84

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIFW 103
           LY++R+HL DVTE++N   WE+K+R++K+ ++   +F++ +W
Sbjct: 85  LYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSIFITTYW 126

[Close]

BLAST of MS012904 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-22
Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   LMCLADLEFDYINPYDSASRINQVIMPEFIAVGILCLFYLLTGHWAMSLFCGPYIYYNVR 60
           ++CL DLE DY+NP+++++RIN++++PEFI  G LCL +LLT HW   L   P   Y+  
Sbjct: 26  VICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLFLLTWHWVFFLVAVPVTVYHAM 85

Query: 61  LYLRRQHLIDVTEIFNMLNWEKKQRIFKLVYLVFLLFLSIF 102
           LY  R++LIDVTE+F  +++EKK R  KL + VFL  + +F
Sbjct: 86  LYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIMVVF 126

The following BLAST results are available for this feature:

BLAST of MS012904 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152805.1	1.5e-49	98.04	protein cornichon homolog 4-like [Momordica charantia] >XP_022152806.1 protein c...	[more]
XP_038876883.1	4.0e-47	90.20	protein cornichon homolog 4-like [Benincasa hispida]	[more]
XP_022965215.1	2.0e-46	88.24	protein cornichon homolog 4-like [Cucurbita maxima] >XP_022965216.1 protein corn...	[more]
XP_023005595.1	2.6e-46	88.24	protein cornichon homolog 4-like [Cucurbita maxima] >KAG6596832.1 Protein cornic...	[more]
XP_022923576.1	2.6e-46	87.25	protein cornichon homolog 4-like [Cucurbita moschata] >XP_022923577.1 protein co...	[more]

BLAST of MS012904 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3EDD7	2.6e-41	74.51	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
Q84W04	2.6e-41	74.51	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q8GWT5	7.9e-38	70.59	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q9SZ74	1.8e-29	51.96	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]
Q9C7D7	5.1e-21	47.52	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]

BLAST of MS012904 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIV4	7.1e-50	98.04	protein cornichon homolog 4-like OS=Momordica charantia OX=3673 GN=LOC111020433 ...	[more]
A0A6J1HL36	9.6e-47	88.24	protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111465137 PE=...	[more]
A0A6J1E6H8	1.3e-46	87.25	protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111431220 P...	[more]
A0A6J1KXU1	1.3e-46	88.24	protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111498534 PE=...	[more]
A0A1S3BLR3	3.7e-46	88.24	protein cornichon homolog 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490940 P...	[more]

BLAST of MS012904 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12340.1	1.9e-42	74.51	Cornichon family protein	[more]
AT1G12390.1	1.9e-42	74.51	Cornichon family protein	[more]
AT1G62880.1	5.6e-39	70.59	Cornichon family protein	[more]
AT4G12090.1	1.2e-30	51.96	Cornichon family protein	[more]
AT3G12180.1	3.6e-22	47.52	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 1..101 e-value: 2.2E-42 score: 156.8
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 1..101 e-value: 5.8E-36 score: 123.5
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 1..102
None	No IPR available	PANTHER	PTHR12290:SF30	PROTEIN CORNICHON HOMOLOG 2-RELATED	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012904.1	MS012904.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport