MS012899 (gene) Bitter gourd (TR) v1

Overview


Name	MS012899
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ycf49-like protein
Location	scaffold38: 215437 .. 218455 (+)
RNA-Seq Expression	MS012899
Synteny	MS012899

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTCACTTCCACCTTGTTACATTCATTCTCAAATCCCAAATGTCCAATTTCTTCTTCTTCTTCTTCCTCGCCGCCGAGGTCTAGAGACTTCGCCGCTCCTTCTCAAGCTCCTCCCGGAATCAGATTCCGGAGAATTATCGGCGCCGGTCTGGTTTTGGACTCGAAATCCATGGTGGTTTTGCTCGGCACGGGCTTCACGCTGGCCCTTCTGGGACCTGAATCGGCTTCAGCTGCGGTGGAATTGCAGGCGTTGGGTGCTTCTTCGTTGCAATTTAATGAGCCCCAGAATGCTCTCTCGTTGCCCACCTGGGCCATTCATGTTTCCAGCGTTGTTGAGTGGTGAGGATTTATGCATCTTCTTCTGTTCTATGTTGGTTTCCTCAGCTGTAATTCGTCTAATATTTTTCACAATTCGTTGAAATTGAACTTCACATTTAGTTATTTTCAATGAAGTAGTGCTCATGAAGGGATTAAAAGATACACCATAGTTGTCATCTTCAATTGCACATTTCCAACATGAATGTAAGAATTGATATATCATATGTTTTGAGGTAATGCCAGTATTTAATGTTAAAACTATGCATAATATCAGAGAAATGTAGACTTTCGGGAATATAATTGATATCTACATCCTTGAATAAGTTTGTTAAATTATCGACACCTGATAGATTTAGGCATACATGATCTTTTGTGTATAAGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGCAATGAGGCCTGGAAGGGACTTTCCTGGGGCATGGTCAGTTCTACTTCTCTGTTGATATTTTCTTTCTCCTCTATCTTACAGATTGGACTTTCTTTTTCTTTCAATGCTTTATTTAGAAAAGGAAAAGTGAGTCTGAATGAATTGTTATTTCTTTATTTGCTCTCTAGTTGTTATAATTCTTTGAAAAGACAGAGAAGAAGAAGAGGAAATGAGTGTTTAGATTAGCCTAAGCTGATATTACTAAACATATTAAATGAAACCACCACACTCTAGCATAGCACAAAAGTAACATTGGATTCGATGTATCCTCAATGTCTCGGATGGATCATTGAATTGGTGGCTGTTTCATTTTATCAAAGAAAATTGTTCCTTAACTTGTGCAGGTGCCATTGCTAGGTGGAGCATTTTGTGCTTGTACATGGCATTTTTTCTACAATTCCGAATCTCTCGAGGTATACCAAGTTTCTGTTTTCGCATAACCTTGCTGGATGCTGAAATCTCTGTAAACGTTCACATATTCTACTTGATCGTGATGATTTGCTAAAGCTTTAAAAGTATTAGAATGTACACCTAGCTAAACTAAAAGTGTTTTCTATCATTAATATATTAGCTTCTTTCAGTTATTCTCATCGTGTAAATCTTGGAACATCTCAATATGGTTGATTAGACTCCCCAAATGTAGTCCTGAAACGATCCATGGATACGAAAACGTTGTCTCTAAAATGCTCAATTCAGTTCAATTCTTCATTTACCCCTTCTAAATTTTCACTCCAATCACCCATCACAAAAATCCATCGTCATTTTAAGTCCTCAGTTCTAACTTTGAGTCTTTGAGCTCTGAGACCATAAGGAGAATCTACTCCTTTCTGCCTTTTCTGTTATTAGTCAAGATTCCGAGGGCCCATTTTATATCTTCAAAATTTGTTCATGGAGCCTTGTTCTTTTGATTGGTTCCTTCATTCCAGTATCACTTCCAGTCAAGTATTGGAGCTGGCATGAAATTCCTTAGATTATGAAGTTCTCATGGTGCACTTGGTTTAAACTGTTCTTTGTATCTAAGAAGGTAGTTGTGCATGGGGTCGTGGCCTAGATAATGCTGCAAACTAGTTTTGTGATAACTCGTGCAATATTGGAAACTTCATAATTATTTTTCAAGTGCTCCCTTTTCTTGAATTACAGCATCATGATACATTCTTGCTTGTTATCTGAATCTGTTAATATCTGCTAGAAGGCAGTAGTTTTATGCATCAAATAAATGAGAGACGTCGGATTTCTATTCGAAGTGAAAACAGTTTGATGAATGGATTTCTTGGTTTTGGTTCAGCTGTTTTAATTTTTGTTAAATGCCAATTGTTTAGATGGTTATTGTTTCTGAAGAATGAGTAGAAGTGAAGCAAATCACCAACCGAAATATTTTACTCTGCAACCTCATTTCTCTTCCTCCACTTCAATTCACTCTTTCATATGTTTCTTTCAATTTACTTCCAAATTCCAAAATACCCATTTGTTGTACTACCACGTCAGTGTATTCCTTTTGTTACATATGATTATGAGCAGCTTGGGGTCCAGAATTGACCAGAAAAATGTAAGGAAGAAGAGGTGGAAACAACAAAGATAAACCGATCCAAATCGACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATAGGATTCAGATTCTATTGGTGCAGTTTCAAAAGAACAAGAGCAATGTTACCATGAAAAAGTATGAAGAAACTGATCCAAGCCCATCTCTCTCCATATGCTAGGCCCCATATTAGTTTTCCTTGACCTGGATTGCTCTCACACCTATAGTGTTCGTGATTGGGTACTCAATTGTGTATTGATCGAAAGGCGGGCAGCATAGCCCCAACCAAGGGAGTGGTTATATCTAGTACGTGCCCCTTATTCTCGACATGCTGAGTTTAGAGCCTGTTGCTGCAGTTTCAAAAGGACAAGAGCAACCTTGAAAAGAATATAGAGTGTCCTGCCCCTCTCTCCCCCTCCCTCTCCAACTCGATAAAATTTCGAGGACATTGACATTGCATACGATTTGTTCGTCGGGAAAGTTGGTTTGATTAGTGCAGTTTCAAAAGAAAAAGAGCATCCACAGTCGGAAAACTAATATAGAATGACTTGGATTTACTGTTTGAGTGCAGGTTCTGGTGGCCCTTCAAGCAATACTGACGGCCGTAGGGAATGCCACAATGTGTATTGCTGCATTTCGCATATACAAATCACAAGAACGTTCAAGGAACTTG

mRNA sequence

ATGCCACTCACTTCCACCTTGTTACATTCATTCTCAAATCCCAAATGTCCAATTTCTTCTTCTTCTTCTTCCTCGCCGCCGAGGTCTAGAGACTTCGCCGCTCCTTCTCAAGCTCCTCCCGGAATCAGATTCCGGAGAATTATCGGCGCCGGTCTGGTTTTGGACTCGAAATCCATGGTGGTTTTGCTCGGCACGGGCTTCACGCTGGCCCTTCTGGGACCTGAATCGGCTTCAGCTGCGGTGGAATTGCAGGCGTTGGGTGCTTCTTCGTTGCAATTTAATGAGCCCCAGAATGCTCTCTCGTTGCCCACCTGGGCCATTCATGTTTCCAGCGTTGTTGAGTGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGCAATGAGGCCTGGAAGGGACTTTCCTGGGGCATGGTGCCATTGCTAGGTGGAGCATTTTGTGCTTGTACATGGCATTTTTTCTACAATTCCGAATCTCTCGAGGTTCTGGTGGCCCTTCAAGCAATACTGACGGCCGTAGGGAATGCCACAATGTGTATTGCTGCATTTCGCATATACAAATCACAAGAACGTTCAAGGAACTTG

Coding sequence (CDS)

ATGCCACTCACTTCCACCTTGTTACATTCATTCTCAAATCCCAAATGTCCAATTTCTTCTTCTTCTTCTTCCTCGCCGCCGAGGTCTAGAGACTTCGCCGCTCCTTCTCAAGCTCCTCCCGGAATCAGATTCCGGAGAATTATCGGCGCCGGTCTGGTTTTGGACTCGAAATCCATGGTGGTTTTGCTCGGCACGGGCTTCACGCTGGCCCTTCTGGGACCTGAATCGGCTTCAGCTGCGGTGGAATTGCAGGCGTTGGGTGCTTCTTCGTTGCAATTTAATGAGCCCCAGAATGCTCTCTCGTTGCCCACCTGGGCCATTCATGTTTCCAGCGTTGTTGAGTGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGCAATGAGGCCTGGAAGGGACTTTCCTGGGGCATGGTGCCATTGCTAGGTGGAGCATTTTGTGCTTGTACATGGCATTTTTTCTACAATTCCGAATCTCTCGAGGTTCTGGTGGCCCTTCAAGCAATACTGACGGCCGTAGGGAATGCCACAATGTGTATTGCTGCATTTCGCATATACAAATCACAAGAACGTTCAAGGAACTTG

Protein sequence

MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSKSMVVLLGTGFTLALLGPESASAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNATMCIAAFRIYKSQERSRNL

Homology

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BLAST of MS012899 vs. NCBI nr
Match: XP_022152779.1 (uncharacterized protein LOC111020415 [Momordica charantia])

HSP 1 Score: 381.7 bits (979), Expect = 3.8e-102
Identity = 195/198 (98.48%), Postives = 196/198 (98.99%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSKSMV 60
           MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPS+ PPGIRFRRIIGAGLVLDSKSMV
Sbjct: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSKXPPGIRFRRIIGAGLVLDSKSMV 60

Query: 61  VLLGTGFTLALLGPESASAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120
           VLLGTGFTLALLGPESASAA ELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA
Sbjct: 61  VLLGTGFTLALLGPESASAAAELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120

Query: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180
           LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT
Sbjct: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180

Query: 181 MCIAAFRIYKSQERSRNL 199
           MCIAAFRIYKSQERSRNL
Sbjct: 181 MCIAAFRIYKSQERSRNL 198

[Close]

BLAST of MS012899 vs. NCBI nr
Match: XP_023005556.1 (uncharacterized protein LOC111498507 [Cucurbita maxima])

HSP 1 Score: 335.1 bits (858), Expect = 4.1e-88
Identity = 181/202 (89.60%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRS-RDFAAPSQAPPGIRFRRIIGAGLVLDSKSM 60
           M LTSTLLHSFSNPKCPISSSSSSS PRS  DFAA SQA  GIRF RIIGAGL LDSK+M
Sbjct: 1   MSLTSTLLHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRIIGAGLALDSKTM 60

Query: 61  VVLLGTGFTLALLGPES--ASAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWIT 120
           VVL+GTG TLALLGPES  A+AA ELQ+LGASSLQFNEPQNALSLPTWAIHVSSVVEWIT
Sbjct: 61  VVLIGTGLTLALLGPESAAATAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWIT 120

Query: 121 AMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG 180
           AMALVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG
Sbjct: 121 AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG 180

Query: 181 NATMCIAAFRIYK-SQERSRNL 199
           NATMCIAAFRIYK SQERS  L
Sbjct: 181 NATMCIAAFRIYKASQERSSKL 202

[Close]

BLAST of MS012899 vs. NCBI nr
Match: XP_023539827.1 (uncharacterized protein LOC111800391 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.3 bits (848), Expect = 5.9e-87
Identity = 179/203 (88.18%), Postives = 184/203 (90.64%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRS-RDFAAPSQAPPGIRFRRIIGAGLVLDSKSM 60
           M LTSTL HSFSNPKCPISSSSSSS PRS  DFAA SQA  GIRF R IGAGL LDSK+M
Sbjct: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60

Query: 61  VVLLGTGFTLALLGPESA---SAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120
           VVL+GTG TLALLGPESA   +AA ELQ+LGASSLQFNEPQNALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180
           TAMALVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV
Sbjct: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180

Query: 181 GNATMCIAAFRIYK-SQERSRNL 199
           GNATMCIAAFRIYK SQERS  L
Sbjct: 181 GNATMCIAAFRIYKASQERSSKL 203

[Close]

BLAST of MS012899 vs. NCBI nr
Match: XP_022944188.1 (uncharacterized protein LOC111448709 [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 4.7e-84
Identity = 175/204 (85.78%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSS--PPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSKS 60
           M LTSTL  SFSNPKCPISSSSSSS  P  + DFAA SQA   IRF RIIGAGL LDSK+
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKT 60

Query: 61  MVVLLGTGFTLALLGPESA---SAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEW 120
           MVVL+GTG TLALLGPESA   +AA ELQ+LGASSLQFNEPQNALSLPTWAIHVSSVVEW
Sbjct: 61  MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 120

Query: 121 ITAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180
           ITAMALVWQYGEKSG+E+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA
Sbjct: 121 ITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180

Query: 181 VGNATMCIAAFRIYK-SQERSRNL 199
           VGNATMCIAAFRIYK SQERS  L
Sbjct: 181 VGNATMCIAAFRIYKASQERSSKL 204

[Close]

BLAST of MS012899 vs. NCBI nr
Match: KAG6596827.1 (hypothetical protein SDJN03_10007, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 321.2 bits (822), Expect = 6.1e-84
Identity = 175/205 (85.37%), Postives = 182/205 (88.78%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSS---PPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSK 60
           M LTSTL  SFSNPKCPISSSSSSS   P  + DFAA SQA   IRF RIIGAGL LDSK
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSK 60

Query: 61  SMVVLLGTGFTLALLGPESA---SAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVE 120
           +MVVL+GTG TLALLGPESA   +AA ELQ+LGASSLQFNEPQNALSLPTWAIHVSSVVE
Sbjct: 61  TMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVE 120

Query: 121 WITAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT 180
           WITAMALVWQYGEKSG+E+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT
Sbjct: 121 WITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT 180

Query: 181 AVGNATMCIAAFRIYK-SQERSRNL 199
           AVGNATMCIAAFRIYK SQERS  L
Sbjct: 181 AVGNATMCIAAFRIYKASQERSSKL 205

[Close]

BLAST of MS012899 vs. ExPASy Swiss-Prot
Match: Q55720 (Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll0608 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-27
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 98  NALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFF 157
           NALS+PTW +HVSSV+EWI A+ALV +Y  K+G   W+ L+WGMVP L  A CACTWHFF
Sbjct: 2   NALSIPTWMVHVSSVIEWIVAIALVSRYATKAGYGHWRALAWGMVPALVSATCACTWHFF 61

Query: 158 YNSESLEVLVALQAILTAVGNATMCIAAFRIYK 191
            N+  L+ LV LQA+ T +GN T+C+AA+ IY+
Sbjct: 62  DNASQLDWLVTLQALTTVIGNITLCLAAWWIYR 94

[Close]

BLAST of MS012899 vs. ExPASy Swiss-Prot
Match: P15811 (Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.7e-08
Identity = 34/95 (35.79%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 98  NALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFF 157
           N LS  TW +H+SSV+EW+  +     Y +   N + K   +        A CACT HFF
Sbjct: 2   NVLSYFTWFVHLSSVLEWLNIIYFFLLYTKLKKNLSLKTFIFSFFISFCSALCACTLHFF 61

Query: 158 YNSESLEVLVALQAILTAVGNATMCIAAFRIYKSQ 193
            N      L+ LQ+ LT   N T+  +   IYK Q
Sbjct: 62  NNQSFYYFLINLQSFLTLFANITLYFSIL-IYKQQ 95

[Close]

BLAST of MS012899 vs. ExPASy Swiss-Prot
Match: Q9TM18 (Uncharacterized protein ycf49 OS=Cyanidium caldarium OX=2771 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-04
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 99  ALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNEAWKGLSWGMVPL-----LGGAFCACT 158
           +LSLPTW IH+ ++VEW   + L++ +      +  +  ++ ++ L     L G F AC 
Sbjct: 3   SLSLPTWNIHIVTLVEWSIVIRLIYLF--TYFYDIPRSFNFLIIILMIFFFLSGLF-ACC 62

Query: 159 WHFFYNSESLEVLVALQAILTAVGN 179
           WHFF N+  L  +   QA LTA  N
Sbjct: 63  WHFFNNNSILLWISVAQAALTAFSN 84

[Close]

BLAST of MS012899 vs. ExPASy TrEMBL
Match: A0A6J1DH09 (uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020415 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.8e-102
Identity = 195/198 (98.48%), Postives = 196/198 (98.99%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSKSMV 60
           MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPS+ PPGIRFRRIIGAGLVLDSKSMV
Sbjct: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSKXPPGIRFRRIIGAGLVLDSKSMV 60

Query: 61  VLLGTGFTLALLGPESASAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120
           VLLGTGFTLALLGPESASAA ELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA
Sbjct: 61  VLLGTGFTLALLGPESASAAAELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120

Query: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180
           LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT
Sbjct: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180

Query: 181 MCIAAFRIYKSQERSRNL 199
           MCIAAFRIYKSQERSRNL
Sbjct: 181 MCIAAFRIYKSQERSRNL 198

[Close]

BLAST of MS012899 vs. ExPASy TrEMBL
Match: A0A6J1KVA7 (uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.0e-88
Identity = 181/202 (89.60%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRS-RDFAAPSQAPPGIRFRRIIGAGLVLDSKSM 60
           M LTSTLLHSFSNPKCPISSSSSSS PRS  DFAA SQA  GIRF RIIGAGL LDSK+M
Sbjct: 1   MSLTSTLLHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRIIGAGLALDSKTM 60

Query: 61  VVLLGTGFTLALLGPES--ASAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWIT 120
           VVL+GTG TLALLGPES  A+AA ELQ+LGASSLQFNEPQNALSLPTWAIHVSSVVEWIT
Sbjct: 61  VVLIGTGLTLALLGPESAAATAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWIT 120

Query: 121 AMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG 180
           AMALVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG
Sbjct: 121 AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG 180

Query: 181 NATMCIAAFRIYK-SQERSRNL 199
           NATMCIAAFRIYK SQERS  L
Sbjct: 181 NATMCIAAFRIYKASQERSSKL 202

[Close]

BLAST of MS012899 vs. ExPASy TrEMBL
Match: A0A6J1FXT1 (uncharacterized protein LOC111448709 OS=Cucurbita moschata OX=3662 GN=LOC111448709 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 175/204 (85.78%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSS--PPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSKS 60
           M LTSTL  SFSNPKCPISSSSSSS  P  + DFAA SQA   IRF RIIGAGL LDSK+
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKT 60

Query: 61  MVVLLGTGFTLALLGPESA---SAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEW 120
           MVVL+GTG TLALLGPESA   +AA ELQ+LGASSLQFNEPQNALSLPTWAIHVSSVVEW
Sbjct: 61  MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 120

Query: 121 ITAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180
           ITAMALVWQYGEKSG+E+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA
Sbjct: 121 ITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180

Query: 181 VGNATMCIAAFRIYK-SQERSRNL 199
           VGNATMCIAAFRIYK SQERS  L
Sbjct: 181 VGNATMCIAAFRIYKASQERSSKL 204

[Close]

BLAST of MS012899 vs. ExPASy TrEMBL
Match: A0A6J1E5R7 (uncharacterized protein LOC111431033 OS=Cucurbita moschata OX=3662 GN=LOC111431033 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.1e-74
Identity = 159/199 (79.90%), Postives = 168/199 (84.42%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSKSMV 60
           M  +ST LHSFS PKCPISSSSSS  P SR  AA SQ P GIR RR  GAG VLDSKS++
Sbjct: 36  MSFSSTFLHSFSIPKCPISSSSSSL-PTSRASAATSQLPTGIRLRR-GGAGRVLDSKSIL 95

Query: 61  VLLGTGFTLALLGPESASAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120
           VLLGTGFTL+ LGP S SAA E Q    SSL FNEPQNALSLPTWA+HVS VVEWI AMA
Sbjct: 96  VLLGTGFTLSFLGPASPSAATEFQ----SSLLFNEPQNALSLPTWAVHVSIVVEWIAAMA 155

Query: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180
           LVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVALQA+LT +GNAT
Sbjct: 156 LVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNAT 215

Query: 181 MCIAAFRIYK-SQERSRNL 199
           MCIAAFRIYK SQERS+NL
Sbjct: 216 MCIAAFRIYKSSQERSKNL 228

[Close]

BLAST of MS012899 vs. ExPASy TrEMBL
Match: A0A1S3BLS2 (ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 156/199 (78.39%), Postives = 167/199 (83.92%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSKSMV 60
           M LTS LL+SFS PK P+        P S DFA  +Q P G+ FRR I + L   SK+MV
Sbjct: 1   MSLTSPLLYSFSIPKSPL--------PISTDFAPTTQLPTGVSFRRPI-SRLGFPSKAMV 60

Query: 61  VLLGTGFTLALLGPESASAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120
           VLLGTGFTLALLGPESASAA ELQ    SSL FNEPQNALSLPTWAIHVSSVVEWITAMA
Sbjct: 61  VLLGTGFTLALLGPESASAATELQ----SSLLFNEPQNALSLPTWAIHVSSVVEWITAMA 120

Query: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180
           LVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVA+QA+LTA+GNAT
Sbjct: 121 LVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNAT 180

Query: 181 MCIAAFRIYK-SQERSRNL 199
           MCIAAFRIYK SQERS+NL
Sbjct: 181 MCIAAFRIYKSSQERSKNL 186

[Close]

BLAST of MS012899 vs. TAIR 10
Match: AT4G22830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634). )

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-47
Identity = 95/148 (64.19%), Postives = 109/148 (73.65%), Query Frame = 0


Query: 46  RIIGAGLVLDSKSMVVLLGTGFTLALL---GPESASAAVELQALGASSLQFNEPQNALSL 105
           RI    L+ D  ++  L+GT    A     GP++ + A  +      SLQ +EP NALSL
Sbjct: 48  RIRSRSLIHDPVALSGLIGTSLVAAAFITAGPDATALAAVV-----DSLQLSEPSNALSL 107

Query: 106 PTWAIHVSSVVEWITAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSES 165
           PTWA+HVSSVVEWITAMALVW+YGE+ G E+WKGLSWGMVPLLGGA CACTWHFFYN ES
Sbjct: 108 PTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDES 167

Query: 166 LEVLVALQAILTAVGNATMCIAAFRIYK 191
           LEVLVALQA LT  GN T+CIAAFRI K
Sbjct: 168 LEVLVALQAALTVFGNITLCIAAFRINK 190

[Close]

BLAST of MS012899 vs. TAIR 10
Match: AT4G22830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). )

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-45
Identity = 106/193 (54.92%), Postives = 123/193 (63.73%), Query Frame = 0


Query: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSQAPPGIRFRRIIGAGLVLDSKSMV 60
           M + ST    F   K       S S P S   +  +   P IR R      L+ D  ++ 
Sbjct: 1   MAIASTATVLFCCAKPNFRRIHSESRPAS---SLTTSNEPVIRIR---SRSLIHDPVALS 60

Query: 61  VLLGTGFTLALL---GPESASAAVELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWIT 120
            L+GT    A     GP++ + A  +      SLQ +EP NALSLPTWA+HVSSVVEWIT
Sbjct: 61  GLIGTSLVAAAFITAGPDATALAAVV-----DSLQLSEPSNALSLPTWAVHVSSVVEWIT 120

Query: 121 AMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG 180
           AMALVW+YGE+ G E+WKGLSWGMVPLLGGA CACTWHFFYN ESLEVLVALQA LT  G
Sbjct: 121 AMALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDESLEVLVALQAALTVFG 180

Query: 181 NATMCIAAFRIYK 191
           N T+CIAAFRI K
Sbjct: 181 NITLCIAAFRINK 182

The following BLAST results are available for this feature:

BLAST of MS012899 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152779.1	3.8e-102	98.48	uncharacterized protein LOC111020415 [Momordica charantia]	[more]
XP_023005556.1	4.1e-88	89.60	uncharacterized protein LOC111498507 [Cucurbita maxima]	[more]
XP_023539827.1	5.9e-87	88.18	uncharacterized protein LOC111800391 [Cucurbita pepo subsp. pepo]	[more]
XP_022944188.1	4.7e-84	85.78	uncharacterized protein LOC111448709 [Cucurbita moschata]	[more]
KAG6596827.1	6.1e-84	85.37	hypothetical protein SDJN03_10007, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS012899 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55720	1.4e-27	59.14	Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P15811	9.7e-08	35.79	Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1	[more]
Q9TM18	2.2e-04	35.29	Uncharacterized protein ycf49 OS=Cyanidium caldarium OX=2771 GN=ycf49 PE=3 SV=1	[more]

BLAST of MS012899 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DH09	1.8e-102	98.48	uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1KVA7	2.0e-88	89.60	uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507...	[more]
A0A6J1FXT1	2.3e-84	85.78	uncharacterized protein LOC111448709 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A6J1E5R7	2.1e-74	79.90	uncharacterized protein LOC111431033 OS=Cucurbita moschata OX=3662 GN=LOC1114310...	[more]
A0A1S3BLS2	1.1e-73	78.39	ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1	[more]

BLAST of MS012899 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22830.2	2.8e-47	64.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G22830.1	1.6e-45	54.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019634	Uncharacterised protein family Ycf49	PFAM	PF10693	DUF2499	coord: 99..186 e-value: 5.0E-39 score: 132.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR33833:SF4	YCF49-LIKE PROTEIN	coord: 60..197
None	No IPR available	PANTHER	PTHR33833	NUCLEOLAR-LIKE PROTEIN-RELATED	coord: 60..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012899.1	MS012899.1	mRNA