MS012888 (gene) Bitter gourd (TR) v1

Overview


Name	MS012888
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	BnaA03g50020D protein
Location	scaffold38: 110068 .. 110433 (-)
RNA-Seq Expression	MS012888
Synteny	MS012888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAACGGCTCGCTATTACTGGCCAAAACAATCCCAAACACCACAGGCAAAAGCGCAAGATAAACCTCAGCAGACTCCTTCTTACAAGTAATCAAGAAAGCAAAAATCGCAGTGAAAAACGGCGTCGTAGCGCCGATTGCTTGATTAAACGAAACCGGAAGGTAGCGAAGAGAAGTATTGCCGCAGACGACGGAGAAGCAGAAAATGGCGCTGAGGGCAAAGATTTTGAAAAACTGTTTACGAGAAAGAATGTGCTGCAACGGAACAATCTCGAGGAAATTAATGGCGATATAGCTATAAGCGGCGCAAGCGAGCATGTGGAGCATGGTGAGGAAGATCGGGTAGCGGTAGCCATAGAAGCT

mRNA sequence

ATGAAACAACGGCTCGCTATTACTGGCCAAAACAATCCCAAACACCACAGGCAAAAGCGCAAGATAAACCTCAGCAGACTCCTTCTTACAAGTAATCAAGAAAGCAAAAATCGCAGTGAAAAACGGCGTCGTAGCGCCGATTGCTTGATTAAACGAAACCGGAAGGTAGCGAAGAGAAGTATTGCCGCAGACGACGGAGAAGCAGAAAATGGCGCTGAGGGCAAAGATTTTGAAAAACTGTTTACGAGAAAGAATGTGCTGCAACGGAACAATCTCGAGGAAATTAATGGCGATATAGCTATAAGCGGCGCAAGCGAGCATGTGGAGCATGGTGAGGAAGATCGGGTAGCGGTAGCCATAGAAGCT

Coding sequence (CDS)

ATGAAACAACGGCTCGCTATTACTGGCCAAAACAATCCCAAACACCACAGGCAAAAGCGCAAGATAAACCTCAGCAGACTCCTTCTTACAAGTAATCAAGAAAGCAAAAATCGCAGTGAAAAACGGCGTCGTAGCGCCGATTGCTTGATTAAACGAAACCGGAAGGTAGCGAAGAGAAGTATTGCCGCAGACGACGGAGAAGCAGAAAATGGCGCTGAGGGCAAAGATTTTGAAAAACTGTTTACGAGAAAGAATGTGCTGCAACGGAACAATCTCGAGGAAATTAATGGCGATATAGCTATAAGCGGCGCAAGCGAGCATGTGGAGCATGGTGAGGAAGATCGGGTAGCGGTAGCCATAGAAGCT

Protein sequence

MKQRLAITGQNNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRSIAADDGEAENGAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGASEHVEHGEEDRVAVAIEA

Homology

[Close]

BLAST of MS012888 vs. NCBI nr
Match: RXH95401.1 (hypothetical protein DVH24_007901 [Malus domestica])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 58/122 (47.54%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MKQRLAITGQNNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRS 60
           MKQRLA+ GQ++ +++R++  +NL  LL T + E K+  EK R  AD L++ + +VA+  
Sbjct: 1   MKQRLAVAGQHDSQNNREEGTVNLGGLLFTRDNERKDGGEKGRGGADGLVEGDGEVAEGG 60

Query: 61  IAADDGEAENGAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGASEHVEHGEEDRVAVAI 120
           +AA+DGEAE+G E +D EKL   ++VL  + LEE++GD+A+ GA +HVEH E+D VA A+
Sbjct: 61  VAANDGEAEDGGECEDLEKLAAGEDVLTWHYLEEVDGDVAVGGAGDHVEHCEKDGVAEAV 120

Query: 121 EA 123
           EA
Sbjct: 121 EA 122

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BLAST of MS012888 vs. NCBI nr
Match: DAD33777.1 (TPA_asm: hypothetical protein HUJ06_012628 [Nelumbo nucifera])

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-13
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MKQRLAITGQNNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRS 60
           M+Q  AI  QN+ ++  Q+ K++  R LLT N ESKN S++R   AD L++ + KV KRS
Sbjct: 1   MEQWFAIASQNDTENDGQQSKVDFRRFLLTGNDESKNGSKERGGGADSLVEGDGKVTKRS 60

Query: 61  IAADDGEAENGAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGA 105
           ++ADDGEAE+  E  D E+L TR +VL+ + L+ ++GD A+ GA
Sbjct: 61  VSADDGEAEDCTESSDLEELTTRDDVLEGDELQPVDGDEAVGGA 104

[Close]

BLAST of MS012888 vs. NCBI nr
Match: KYP75902.1 (hypothetical protein KK1_020110, partial [Cajanus cajan])

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-09
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 9   GQNNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRSIAADDGEA 68
           G ++P   R + +I    L L  ++ SKN  E+ R  A+ L++RNRKVAKR++   +G+A
Sbjct: 4   GNDDPSDDRNEGEIREPSLPLERHKVSKNGGEEGRGGANSLVERNRKVAKRNVPKHNGDA 63

Query: 69  ENGAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGASEHVEHGEEDRVAVAIEA 123
           EN A+ +D E+L    N LQR++L    G +   G   HV HGEE+ V  A+ A
Sbjct: 64  ENEAQSRDLEELHPGSNCLQRHHLHPRYGHVTEQGTRGHVAHGEENWVLEAVVA 117

[Close]

BLAST of MS012888 vs. NCBI nr
Match: PON87575.1 (hypothetical protein TorRG33x02_165680 [Trema orientale])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 11  NNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRSIAADDGEAEN 70
           N+  ++R +  I    L    +   K+  E+RR   + L++R+R++ +R+++  DG+ E+
Sbjct: 63  NDSGNNRNEGDIGEPGLPPKGHDVGKDGGEERRGGPNSLVERDRQIPERNVSEHDGDTED 122

Query: 71  GAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGASEHVEHGEEDRVAVAIEA 123
            AE +D ++L  R N L R+ L+   GD+A  G S HV HGEEDRV  AI A
Sbjct: 123 EAESRDLKELDRRSNGLHRDYLQPRYGDVAEQGTSGHVAHGEEDRVLEAIVA 174

[Close]

BLAST of MS012888 vs. NCBI nr
Match: KYP48720.1 (hypothetical protein KK1_029609, partial [Cajanus cajan])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 27  LLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRSIAADDGEAENGAEGKDFEKLFTRKNV 86
           L L  ++ S++  E+    AD L++ + +VA+R +A DDG+AEN AEG D E+L      
Sbjct: 22  LPLEGDEVSEDGGEEGGGGADGLVEGDGEVAERDVAEDDGDAENEAEGGDLEELEAGAEG 81

Query: 87  LQRNNLEEINGDIAISGASEHVEHGEEDRVAVAIEA 123
           L  N+LE  +GD+A  GA  HV HGEE+ V  A+ A
Sbjct: 82  LHGNHLEPGDGDVAEEGAGCHVAHGEENGVLEAVVA 117

[Close]

BLAST of MS012888 vs. ExPASy TrEMBL
Match: A0A0A0L742 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038100 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.0e-34
Identity = 84/122 (68.85%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 1   MKQRLAITGQNNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRS 60
           MKQ L IT QNNP++HRQKRKINLSRLLLTSNQ+SKN SEKR  S + L+KRN KV KR 
Sbjct: 1   MKQWLTITSQNNPENHRQKRKINLSRLLLTSNQKSKNGSEKRGGSTNSLVKRNGKVTKRC 60

Query: 61  IAADDGEAENGAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGASEHVEHGEEDRVAVAI 120
           I  ++GE ENGA+ KDF+KLFTRKNVLQRNNL++IN +I IS  S+H++H E+DRV +AI
Sbjct: 61  IPTNNGETENGAKSKDFKKLFTRKNVLQRNNLKKINRNITISRTSQHMKHCEKDRVPIAI 120

Query: 121 EA 123
           EA
Sbjct: 121 EA 122

[Close]

BLAST of MS012888 vs. ExPASy TrEMBL
Match: A0A498JQ56 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007901 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.0e-19
Identity = 58/122 (47.54%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MKQRLAITGQNNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRS 60
           MKQRLA+ GQ++ +++R++  +NL  LL T + E K+  EK R  AD L++ + +VA+  
Sbjct: 1   MKQRLAVAGQHDSQNNREEGTVNLGGLLFTRDNERKDGGEKGRGGADGLVEGDGEVAEGG 60

Query: 61  IAADDGEAENGAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGASEHVEHGEEDRVAVAI 120
           +AA+DGEAE+G E +D EKL   ++VL  + LEE++GD+A+ GA +HVEH E+D VA A+
Sbjct: 61  VAANDGEAEDGGECEDLEKLAAGEDVLTWHYLEEVDGDVAVGGAGDHVEHCEKDGVAEAV 120

Query: 121 EA 123
           EA
Sbjct: 121 EA 122

[Close]

BLAST of MS012888 vs. ExPASy TrEMBL
Match: A0A151U9F0 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_020110 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 9   GQNNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRSIAADDGEA 68
           G ++P   R + +I    L L  ++ SKN  E+ R  A+ L++RNRKVAKR++   +G+A
Sbjct: 4   GNDDPSDDRNEGEIREPSLPLERHKVSKNGGEEGRGGANSLVERNRKVAKRNVPKHNGDA 63

Query: 69  ENGAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGASEHVEHGEEDRVAVAIEA 123
           EN A+ +D E+L    N LQR++L    G +   G   HV HGEE+ V  A+ A
Sbjct: 64  ENEAQSRDLEELHPGSNCLQRHHLHPRYGHVTEQGTRGHVAHGEENWVLEAVVA 117

[Close]

BLAST of MS012888 vs. ExPASy TrEMBL
Match: A0A2P5EQ19 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_165680 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.8e-07
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 11  NNPKHHRQKRKINLSRLLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRSIAADDGEAEN 70
           N+  ++R +  I    L    +   K+  E+RR   + L++R+R++ +R+++  DG+ E+
Sbjct: 63  NDSGNNRNEGDIGEPGLPPKGHDVGKDGGEERRGGPNSLVERDRQIPERNVSEHDGDTED 122

Query: 71  GAEGKDFEKLFTRKNVLQRNNLEEINGDIAISGASEHVEHGEEDRVAVAIEA 123
            AE +D ++L  R N L R+ L+   GD+A  G S HV HGEEDRV  AI A
Sbjct: 123 EAESRDLKELDRRSNGLHRDYLQPRYGDVAEQGTSGHVAHGEEDRVLEAIVA 174

[Close]

BLAST of MS012888 vs. ExPASy TrEMBL
Match: A0A151S1P4 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_029609 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.9e-07
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 27  LLLTSNQESKNRSEKRRRSADCLIKRNRKVAKRSIAADDGEAENGAEGKDFEKLFTRKNV 86
           L L  ++ S++  E+    AD L++ + +VA+R +A DDG+AEN AEG D E+L      
Sbjct: 22  LPLEGDEVSEDGGEEGGGGADGLVEGDGEVAERDVAEDDGDAENEAEGGDLEELEAGAEG 81

Query: 87  LQRNNLEEINGDIAISGASEHVEHGEEDRVAVAIEA 123
           L  N+LE  +GD+A  GA  HV HGEE+ V  A+ A
Sbjct: 82  LHGNHLEPGDGDVAEEGAGCHVAHGEENGVLEAVVA 117

The following BLAST results are available for this feature:

BLAST of MS012888 vs. NCBI nr


Match Name	E-value	Identity	Description
RXH95401.1	1.2e-18	47.54	hypothetical protein DVH24_007901 [Malus domestica]	[more]
DAD33777.1	4.5e-13	46.15	TPA_asm: hypothetical protein HUJ06_012628 [Nelumbo nucifera]	[more]
KYP75902.1	8.8e-09	39.47	hypothetical protein KK1_020110, partial [Cajanus cajan]	[more]
PON87575.1	1.4e-06	36.61	hypothetical protein TorRG33x02_165680 [Trema orientale]	[more]
KYP48720.1	1.8e-06	42.71	hypothetical protein KK1_029609, partial [Cajanus cajan]	[more]

BLAST of MS012888 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L742	5.0e-34	68.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038100 PE=4 SV=1	[more]
A0A498JQ56	6.0e-19	47.54	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007901 PE=4 SV=1	[more]
A0A151U9F0	4.3e-09	39.47	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_020110 PE=4 S...	[more]
A0A2P5EQ19	6.8e-07	36.61	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_165680 PE=4 SV...	[more]
A0A151S1P4	8.9e-07	42.71	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_029609 PE=4 S...	[more]

BLAST of MS012888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012888.1	MS012888.1	mRNA