MS012880 (gene) Bitter gourd (TR) v1

Overview


Name	MS012880
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	histone deacetylase complex subunit SAP18-like
Location	scaffold38: 55249 .. 56850 (+)
RNA-Seq Expression	MS012880
Synteny	MS012880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGTAGACCTTCCGCCCGGCCTCTCCCTCCGCCGTCTCAGCCCAAAGCTCCGCCGCCGCCTCCTCGCCTTCGTTTCGAACCCGTCGACCGCGAAAAGGTTTTTTTTTTTTTCTTTCTTAGGGCTTTACCTTCCTCCTCTCGTGTTTTTTTCTCTCTTACTGAAACCTTTGTCCGTTCATTCAACTGACTTTTCTCTTCGAATTTTGGCGTCCTCTGCGGGGAATTCAAGACCTGCCCTTTGTTGCTTCGGGTTTTTACTAAGGTACGTTTGAGTTTGTTGTGAGAAATCATTCTTAACTGATTTTTTTCCTTTGCTGTTTTGAAATTTGAGAAAATTTTTAATGTGCATCAATGGTGGAAGAAAATGTCGCGAGTTCTGACTTCCTGTTCTAAGTAACTGTTCGACATTGTTGTCCTCTGCTAGCTTTTATGATACTTCTGAGTTAATTAGCGATTGTGCACTTGTTCTACATTGTCTTTACTCAATATGGTAGTGTTTAACCTTGATTCCGTTTCTATTGTTGTGTGAAGATCGTGTTGAAGATTTTTTTCACATTTTTCCTTTTCTTCTGATTGGTACACTTGGGAATTGTTCTTGAAAAAAAAAAAAACTTTATTTTGATATTAGAATTTGGGATTCATGTATTTTCATCTTACTGCGGACACTGACAGGATTATACAACATGACCTTGAAGGAATAGGTCTCAAATGATTTTTGTGAATTATCTTAAGTATTATTATTATGGATTGGAGCTATAGTTGTTTGGGTATATTTGGCTTGTTCATTTTTTTTTTCTTTTCATATTCGTGAGTATCCAGGCCATTATGTTGACTCACTTCGGACAACCTCCTGACCCTACTCCATTTGGTTGCCAAGGAAATATCTACAATCCTAGAGGCCATTATGAGATTTGAAATCTTGTTAGGCTTGTTCATTAGGCTGTCTTTTTGTATCCTATTTTGTGTTATTTTATTTTTCTCAACGAGAGCTTGGTTTGCCAATTAAGAAAAAGAAAAATTGCCTCATTTACATTTGTTGCAGGTAGGAGGTCACCACACTGATGAGGATTTTGCAATTAGAGGCAAGGAACCCAAAGATGAGGTTCAGATTTACACATGGAAAGATGCAACACTCCGGGAACTGACCGATCTAGTATGCTGAAAACCTACACTCATGACTCATCTATTTCTTCGTAGTGTGTTTCCAGTATTTTTCTGTTGATGTTTTGTATATGATAAATGCCCATCTAATTTTAGGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGGTTCGTCTTGAAACAGGTGAGTGAATGATAGCAAAAATATCACCTGCAATGGACTTTAAATTTTACCTTCTCATTTAACTACAAGAATTGGTGATATATTAATAAGTTCAAGTTGTTATCATTTAATTAAGGTTGGAATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAACTGGACTTCCAGGTA

mRNA sequence

ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGTAGACCTTCCGCCCGGCCTCTCCCTCCGCCGTCTCAGCCCAAAGCTCCGCCGCCGCCTCCTCGCCTTCGTTTCGAACCCGTCGACCGCGAAAAGGTAGGAGGTCACCACACTGATGAGGATTTTGCAATTAGAGGCAAGGAACCCAAAGATGAGGTTCAGATTTACACATGGAAAGATGCAACACTCCGGGAACTGACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGGTTCGTCTTGAAACAGGTTGGAATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAACTGGACTTCCAGGTA

Coding sequence (CDS)

ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGTAGACCTTCCGCCCGGCCTCTCCCTCCGCCGTCTCAGCCCAAAGCTCCGCCGCCGCCTCCTCGCCTTCGTTTCGAACCCGTCGACCGCGAAAAGGTAGGAGGTCACCACACTGATGAGGATTTTGCAATTAGAGGCAAGGAACCCAAAGATGAGGTTCAGATTTACACATGGAAAGATGCAACACTCCGGGAACTGACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGGTTCGTCTTGAAACAGGTTGGAATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAACTGGACTTCCAGGTA

Protein sequence

MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV

Homology

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BLAST of MS012880 vs. NCBI nr
Match: XP_022152730.1 (histone deacetylase complex subunit SAP18-like [Momordica charantia])

HSP 1 Score: 277.3 bits (708), Expect = 7.4e-71
Identity = 143/157 (91.08%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPR RFEPVDRE          
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQI 157

[Close]

BLAST of MS012880 vs. NCBI nr
Match: KAG7028342.1 (Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70
Identity = 139/146 (95.21%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKVGGHHTDED 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDREKVG HHTDED
Sbjct: 18  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKVGSHHTDED 77

Query: 61  FAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQ 120
           FAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLK 
Sbjct: 78  FAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKP 137

Query: 121 VGMTHSYGNGRRLDDSKALGELDFQV 147
           VG THSYGNGRRLD SKALGELDFQ+
Sbjct: 138 VGTTHSYGNGRRLDGSKALGELDFQI 163

[Close]

BLAST of MS012880 vs. NCBI nr
Match: XP_022946300.1 (histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >XP_023005582.1 histone deacetylase complex subunit SAP18-like [Cucurbita maxima] >XP_023539983.1 histone deacetylase complex subunit SAP18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 139/157 (88.54%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDRE          
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQI 157

[Close]

BLAST of MS012880 vs. NCBI nr
Match: KAG6596815.1 (Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 139/157 (88.54%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDRE          
Sbjct: 18  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 77

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 78  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 137

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Sbjct: 138 PDKRGRFVLKLVGTTHSYGNGRRLDGSKALGELDFQI 174

[Close]

BLAST of MS012880 vs. NCBI nr
Match: XP_004147963.1 (histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothetical protein Csa_009634 [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 3.8e-67
Identity = 138/157 (87.90%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDRE          
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQI 157

[Close]

BLAST of MS012880 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.2e-35
Identity = 84/145 (57.93%), Postives = 102/145 (70.34%), Query Frame = 0


Query: 13  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDF 72
           A  A  QG    RPLPPP +      PPR + EPVDREK            GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + +++V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQV 147
           G T +Y N ++ DDSK L EL F++
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEI 143

[Close]

BLAST of MS012880 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-16
Identity = 51/115 (44.35%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 45  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
            PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQ+
Sbjct: 78  YPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQI 129

[Close]

BLAST of MS012880 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-16
Identity = 51/115 (44.35%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 45  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
            PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQ+
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQI 129

[Close]

BLAST of MS012880 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-16
Identity = 51/115 (44.35%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 45  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
            PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQ+
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQI 129

[Close]

BLAST of MS012880 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.4e-16
Identity = 51/115 (44.35%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 45  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
            PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQ+
Sbjct: 78  YPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQI 129

[Close]

BLAST of MS012880 vs. ExPASy TrEMBL
Match: A0A6J1DES5 (histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN=LOC111020386 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-71
Identity = 143/157 (91.08%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPR RFEPVDRE          
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQI 157

[Close]

BLAST of MS012880 vs. ExPASy TrEMBL
Match: A0A6J1KTJ0 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111498523 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.9e-68
Identity = 139/157 (88.54%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDRE          
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQI 157

[Close]

BLAST of MS012880 vs. ExPASy TrEMBL
Match: A0A6J1G3G8 (histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=LOC111450421 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.9e-68
Identity = 139/157 (88.54%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDRE          
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQ+
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQI 157

[Close]

BLAST of MS012880 vs. ExPASy TrEMBL
Match: A0A0A0L751 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 138/157 (87.90%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDRE          
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQI 157

[Close]

BLAST of MS012880 vs. ExPASy TrEMBL
Match: A0A5D3D7E1 (Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001050 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.4e-67
Identity = 138/157 (87.90%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDRE---------- 60
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PR RFEPVDRE          
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQV 147
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQ+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQI 157

[Close]

BLAST of MS012880 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-36
Identity = 84/145 (57.93%), Postives = 102/145 (70.34%), Query Frame = 0


Query: 13  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDF 72
           A  A  QG    RPLPPP +      PPR + EPVDREK            GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + +++V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQV 147
           G T +Y N ++ DDSK L EL F++
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEI 143

[Close]

BLAST of MS012880 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 142.1 bits (357), Expect = 3.5e-34
Identity = 84/145 (57.93%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 13  AATAPPQGRPSARPLPPPSQPKAPPPPPRLRFEPVDREKV-----------GGHHTDEDF 72
           A  A  QG    RPLPPP +      PPR + EPVDREK            GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G +    V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGY---NV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQV 147
           G T +Y N ++ DDSK L EL F++
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEI 140

The following BLAST results are available for this feature:

BLAST of MS012880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152730.1	7.4e-71	91.08	histone deacetylase complex subunit SAP18-like [Momordica charantia]	[more]
KAG7028342.1	2.8e-70	95.21	Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp...	[more]
XP_022946300.1	1.0e-67	88.54	histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >XP_02300558...	[more]
KAG6596815.1	1.3e-67	88.54	Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp...	[more]
XP_004147963.1	3.8e-67	87.90	histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothet...	[more]

BLAST of MS012880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64644	5.2e-35	57.93	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q3T022	4.2e-16	44.35	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
O00422	4.2e-16	44.35	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
Q5RDT5	4.2e-16	44.35	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]
O55128	5.4e-16	44.35	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]

BLAST of MS012880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DES5	3.6e-71	91.08	histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1KTJ0	4.9e-68	88.54	histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1G3G8	4.9e-68	88.54	histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0L751	1.8e-67	87.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1	[more]
A0A5D3D7E1	5.4e-67	87.90	Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of MS012880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45640.1	3.7e-36	57.93	SIN3 associated polypeptide P18	[more]
AT2G45640.2	3.5e-34	57.93	SIN3 associated polypeptide P18	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 52..135 e-value: 2.4E-22 score: 79.6
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 14..146
IPR042534	Sin3 associated polypeptide p18 superfamily	GENE3D	3.10.20.550	ASAP complex, SAP18 subunit	coord: 47..146 e-value: 4.8E-28 score: 99.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 14..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012880.1	MS012880.1	mRNA