MS012872 (gene) Bitter gourd (TR) v1

Overview
NameMS012872
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPatatin
Locationscaffold63: 4139108 .. 4139221 (+)
RNA-Seq ExpressionMS012872
SyntenyMS012872
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATCAGCGGCTCTGTTGACGGCCCCTAATGAGAACAACCGCCCTTGGTTCTCTGCCCTTAACCGACAAAAGTTCTTCCTCGTCCACTATCCTAAAATATACCCTCAGAAAAGG

mRNA sequence

CTATCAGCGGCTCTGTTGACGGCCCCTAATGAGAACAACCGCCCTTGGTTCTCTGCCCTTAACCGACAAAAGTTCTTCCTCGTCCACTATCCTAAAATATACCCTCAGAAAAGG

Coding sequence (CDS)

CTATCAGCGGCTCTGTTGACGGCCCCTAATGAGAACAACCGCCCTTGGTTCTCTGCCCTTAACCGACAAAAGTTCTTCCTCGTCCACTATCCTAAAATATACCCTCAGAAAAGG

Protein sequence

LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR
Homology
[Close]
BLAST of MS012872 vs. NCBI nr
Match: XP_022996830.1 (patatin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LTAPNENNRP FSA + + F+L H PKI+PQKR
Sbjct: 68  LVTAMLTAPNENNRPLFSAKDIKDFYLNHSPKIFPQKR 105

[Close]
BLAST of MS012872 vs. NCBI nr
Match: KAG7029352.1 (Patatin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LTAPNENNRP FSA + + F+L H PKI+PQKR
Sbjct: 422 LVTAMLTAPNENNRPLFSAKDIKDFYLDHSPKIFPQKR 459

[Close]
BLAST of MS012872 vs. NCBI nr
Match: XP_023547070.1 (patatin-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LTAPNENNRP FSA + + F+L H PKI+PQKR
Sbjct: 68  LVTAMLTAPNENNRPLFSAKDIKDFYLDHSPKIFPQKR 105

[Close]
BLAST of MS012872 vs. NCBI nr
Match: XP_023547071.1 (patatin-like protein 2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LTAPNENNRP FSA + + F+L H PKI+PQKR
Sbjct: 68  LVTAMLTAPNENNRPLFSAKDIKDFYLDHSPKIFPQKR 105

[Close]
BLAST of MS012872 vs. NCBI nr
Match: KAG6598389.1 (Patatin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LTAPNENNRP FSA + + F+L H PKI+PQKR
Sbjct: 68  LVTAMLTAPNENNRPLFSAKDIKDFYLDHSPKIFPQKR 105

[Close]
BLAST of MS012872 vs. ExPASy Swiss-Prot
Match: A2YW91 (Patatin-like protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=PLP2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-05
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQK 38
           L  A+LTAPNENNRP F+A    KF++ H P I+PQK
Sbjct: 72  LLTAMLTAPNENNRPLFAADELAKFYIEHSPSIFPQK 108

[Close]
BLAST of MS012872 vs. ExPASy Swiss-Prot
Match: Q6ZJD3 (Patatin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLP2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-05
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQK 38
           L  A+LTAPNENNRP F+A    KF++ H P I+PQK
Sbjct: 72  LLTAMLTAPNENNRPLFAADELAKFYIEHSPSIFPQK 108

[Close]
BLAST of MS012872 vs. ExPASy Swiss-Prot
Match: O23180 (Patatin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=PLP5 PE=1 SV=2)

HSP 1 Score: 43.5 bits (101), Expect = 6.2e-04
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQ 37
           L  A+LTAP+EN RP F+A     F+L H PKI+PQ
Sbjct: 70  LVTAMLTAPDENGRPRFAAKEIVPFYLEHCPKIFPQ 105

[Close]
BLAST of MS012872 vs. ExPASy TrEMBL
Match: A0A6J1K7V3 (Patatin OS=Cucurbita maxima OX=3661 GN=LOC111491958 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LTAPNENNRP FSA + + F+L H PKI+PQKR
Sbjct: 68  LVTAMLTAPNENNRPLFSAKDIKDFYLNHSPKIFPQKR 105

[Close]
BLAST of MS012872 vs. ExPASy TrEMBL
Match: A0A6J1HBN8 (Patatin OS=Cucurbita moschata OX=3662 GN=LOC111462620 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LTAPNENNRP FSA + + F+L H PKI+PQKR
Sbjct: 68  LVTAMLTAPNENNRPLFSAKDIKDFYLDHSPKIFPQKR 105

[Close]
BLAST of MS012872 vs. ExPASy TrEMBL
Match: A0A6J1GHW0 (Patatin OS=Cucurbita moschata OX=3662 GN=LOC111454082 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LT PNENNRP FSA + ++F+L H PKI+PQKR
Sbjct: 68  LVTAMLTTPNENNRPLFSAKDIKEFYLDHCPKIFPQKR 105

[Close]
BLAST of MS012872 vs. ExPASy TrEMBL
Match: A0A7J7HS75 (Patatin OS=Camellia sinensis OX=4442 GN=HYC85_008579 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.4e-04
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
           L  A+LTAPNENNRP F+A + + F+L H PKI+PQ+R
Sbjct: 71  LITAMLTAPNENNRPLFAAKDIKNFYLEHSPKIFPQER 108

[Close]
BLAST of MS012872 vs. ExPASy TrEMBL
Match: A0A4S4EI03 (Patatin OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_006570 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.4e-04
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 1  LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQKR 39
          L  A+LTAPNENNRP F+A + + F+L H PKI+PQ+R
Sbjct: 42 LITAMLTAPNENNRPLFAAKDIKNFYLEHSPKIFPQER 79

[Close]
BLAST of MS012872 vs. TAIR 10
Match: AT4G37060.1 (PATATIN-like protein 5 )

HSP 1 Score: 43.5 bits (101), Expect = 4.4e-05
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQ 37
           L  A+LTAP+EN RP F+A     F+L H PKI+PQ
Sbjct: 70  LVTAMLTAPDENGRPRFAAKEIVPFYLEHCPKIFPQ 105

[Close]
BLAST of MS012872 vs. TAIR 10
Match: AT4G37060.2 (PATATIN-like protein 5 )

HSP 1 Score: 43.5 bits (101), Expect = 4.4e-05
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQ 37
           L  A+LTAP+EN RP F+A     F+L H PKI+PQ
Sbjct: 91  LVTAMLTAPDENGRPRFAAKEIVPFYLEHCPKIFPQ 126

[Close]
BLAST of MS012872 vs. TAIR 10
Match: AT4G37070.2 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 3.7e-04
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQ 37
           L  A+LT P+E  RP F+A +   F+L H PKI+PQ
Sbjct: 70  LVTAMLTVPDETGRPHFAAKDIVPFYLEHCPKIFPQ 105

[Close]
BLAST of MS012872 vs. TAIR 10
Match: AT4G37070.3 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 3.7e-04
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQ 37
           L  A+LT P+E  RP F+A +   F+L H PKI+PQ
Sbjct: 70  LVTAMLTVPDETGRPHFAAKDIVPFYLEHCPKIFPQ 105

[Close]
BLAST of MS012872 vs. TAIR 10
Match: AT4G37070.1 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 3.7e-04
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 0 

Query: 1   LSAALLTAPNENNRPWFSALNRQKFFLVHYPKIYPQ 37
           L  A+LT P+E  RP F+A +   F+L H PKI+PQ
Sbjct: 70  LVTAMLTVPDETGRPHFAAKDIVPFYLEHCPKIFPQ 105

The following BLAST results are available for this feature:
BLAST of MS012872 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022996830.13.5e-0465.79patatin-like protein 2 [Cucurbita maxima][more]
KAG7029352.13.5e-0465.79Patatin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023547070.13.5e-0465.79patatin-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023547071.13.5e-0465.79patatin-like protein 2 isoform X2 [Cucurbita pepo subsp. pepo][more]
KAG6598389.13.5e-0465.79Patatin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of MS012872 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2YW911.1e-0559.46Patatin-like protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=PLP2 PE=3 SV=1[more]
Q6ZJD31.1e-0559.46Patatin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLP2 PE=3 SV=... [more]
O231806.2e-0455.56Patatin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=PLP5 PE=1 SV=2[more]
BLAST of MS012872 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K7V31.7e-0465.79Patatin OS=Cucurbita maxima OX=3661 GN=LOC111491958 PE=3 SV=1[more]
A0A6J1HBN81.7e-0465.79Patatin OS=Cucurbita moschata OX=3662 GN=LOC111462620 PE=3 SV=1[more]
A0A6J1GHW02.9e-0463.16Patatin OS=Cucurbita moschata OX=3662 GN=LOC111454082 PE=3 SV=1[more]
A0A7J7HS756.4e-0460.53Patatin OS=Camellia sinensis OX=4442 GN=HYC85_008579 PE=3 SV=1[more]
A0A4S4EI036.4e-0460.53Patatin OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_006570 PE=3 SV=1[more]
BLAST of MS012872 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37060.14.4e-0555.56PATATIN-like protein 5 [more]
AT4G37060.24.4e-0555.56PATATIN-like protein 5 [more]
AT4G37070.23.7e-0450.00Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein [more]
AT4G37070.33.7e-0450.00Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein [more]
AT4G37070.13.7e-0450.00Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012872.1MS012872.1mRNA