MS012624 (gene) Bitter gourd (TR) v1

Overview


Name	MS012624
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L29, chloroplastic
Location	scaffold63: 2141108 .. 2143095 (-)
RNA-Seq Expression	MS012624
Synteny	MS012624

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAACCTCTCTATTGCTTCGCCTTCTACCGTTTCCCTCCCTTCTACAGTTCTTAGCTCAACCTCCAAATCCTCCTTCATTGGCCTTCAGATCCGTTCTCCATTTTCGGTTCGCGTTGCTGCTAAAACGACATGTGCCGGAAGCCGCAATTCGTCTGTGGTAATGATGGCGAAGAGAGAGGAGGAATTGAAGGAAATCAGAGCCAAAACTACTGAGGAAATAAACGAGGAGGTGGTCGATCTCAAGGGCGAGCTCCTTATGCTTCGGCTTCAGAAATCAGCTCGAAATGAGTTTAAGTCCAGCGAATTCCGTCGCATGCGCAAACGGGTACTTTTCTTCCCTCATTGGTTGATGGGTTCTTAGTTGATTTTGAATTCAACTGAAATAAGTGGATTTTATGTTCGTGTTAAAAATATAACCCATGTGAAATTGTAGTTTCTAAGTTCCACTATCTTATCATCCACATTTTATTTATCTGGTGCCAAATTTTCTTTAAATTTGGGAGTGCAATGGTTTCTAATGGGCTTTGTAGCTGTTGGAATCTAAGATTCTTGGCTATTTTTTACCGCCAAAAAAGAAAAAGAGTTGAAATAAATTGAATCTGAAAAGTAAACAATTATAGGACCATTTATAGAATCCATTCAGGATTCAGATTTTAGTTCACAATCCAGAAAGGTTAACCAAAAGTATATTTCACCATGTTGGGAAAAAGTTGCAGCAGCTCCATTTAACAATGCAATTAGGGAGCCAGCTCGACTCCTTCTGAAACTTAGAAATCCAATTAGAATCAGGAAATCTAATTGAAAGTAGGATTTCAGGTTCGAAAGACTTCAAATTGGACTTAGATTAAGTATTTACTTCAAAATAACCCCTTACTTGAAATAGCTCTCAATCCTTGAAATAGCTGTCTAGTGGAATGTACATTGTTGATATATTTTGCACCATCTTCTAAAGACTCTTCAATGCCTTCATGCTACCATTTTGTTTTAGATTCCCAAAATGCCTGAAGCATGAATTAGCTTATAAATTGGTTCAAAGTAACTTATCTGTTTACATGAAGTTACTTATTTGGCACAACATAAATGTTTTATGTAAGAGAGAGGGGCTTTTGCATTTGAGCCACGTGTAGTCTTTTCATGACTTTTCTACCAAACTTCTTCATGCTCAGTGATAAGGATGTTGGAATTATCTGTTGGGCCTCTCACAGTTGCACTGAACCTAAGTCCTGAATGATCAGAAGTTATTAAACAGCCAATAGGGAATTTTAGTAGTTGATGTGTATGAATTTAGTAAGACTAGCTTTTTTCCGAATTCGCTTGTGATCATGCTGTAGGGATGTTTAATACTGTAACAGGCTCGTTCTCGTGGTAAGAATTGCATGTTCTAATTTTAGAAACTAGTGAAGATATCCAGTTTTAAATTTTGAATCTATGGTCCAATCATAATGCCTTGGTGATTAGGTCTTGAGGTTTGTACCTACCCTTCCAAAGTATTTGGTTCAAGTCTGTAGCTTGACAACTTAATTACTGAAAACCTTCGTTCCCCCTTGAAGCTGGCTTTGGGGTGAGCAAAGCCTCCCGAAAATTCCCGGTAATCTATAAAATGGGTGCAAAAGTTAACTTCTCAGCAACATAATAATGTTCCTCTCTCTTTATTGTTATTATTTATCTCTACATTCTGTTGGATTGCAACATCTTGACTACACATCCGATGACTGGACTTGCCCTACAACTTTCAATTCATGTCTCTCATACGTCCCGAAACTTGGGAGTTTTGAACCATAAATTTTGTTAACGTCTGACCAATGGCAGATTGCTCGGATGCTTACTGTAAAACGTGAAAGAGAGATTGAGGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGCATTGTTGTAAGACCACCTCCATCTCTGAAGAAGTTGAGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCT

mRNA sequence

ATGATAAACCTCTCTATTGCTTCGCCTTCTACCGTTTCCCTCCCTTCTACAGTTCTTAGCTCAACCTCCAAATCCTCCTTCATTGGCCTTCAGATCCGTTCTCCATTTTCGGTTCGCGTTGCTGCTAAAACGACATGTGCCGGAAGCCGCAATTCGTCTGTGGTAATGATGGCGAAGAGAGAGGAGGAATTGAAGGAAATCAGAGCCAAAACTACTGAGGAAATAAACGAGGAGGTGGTCGATCTCAAGGGCGAGCTCCTTATGCTTCGGCTTCAGAAATCAGCTCGAAATGAGTTTAAGTCCAGCGAATTCCGTCGCATGCGCAAACGGATTGCTCGGATGCTTACTGTAAAACGTGAAAGAGAGATTGAGGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGCATTGTTGTAAGACCACCTCCATCTCTGAAGAAGTTGAGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCT

Coding sequence (CDS)

ATGATAAACCTCTCTATTGCTTCGCCTTCTACCGTTTCCCTCCCTTCTACAGTTCTTAGCTCAACCTCCAAATCCTCCTTCATTGGCCTTCAGATCCGTTCTCCATTTTCGGTTCGCGTTGCTGCTAAAACGACATGTGCCGGAAGCCGCAATTCGTCTGTGGTAATGATGGCGAAGAGAGAGGAGGAATTGAAGGAAATCAGAGCCAAAACTACTGAGGAAATAAACGAGGAGGTGGTCGATCTCAAGGGCGAGCTCCTTATGCTTCGGCTTCAGAAATCAGCTCGAAATGAGTTTAAGTCCAGCGAATTCCGTCGCATGCGCAAACGGATTGCTCGGATGCTTACTGTAAAACGTGAAAGAGAGATTGAGGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGCATTGTTGTAAGACCACCTCCATCTCTGAAGAAGTTGAGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCT

Protein sequence

MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

Homology

[Close]

BLAST of MS012624 vs. NCBI nr
Match: XP_022136355.1 (50S ribosomal protein L29, chloroplastic [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 2.6e-75
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR
Sbjct: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of MS012624 vs. NCBI nr
Match: XP_038903244.1 (50S ribosomal protein L29, chloroplastic [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 2.0e-67
Identity = 154/168 (91.67%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           MINLSIASPSTVS+P  VL+STSKSSF GLQIR PFS RV  KT C G RNSSVVMMAKR
Sbjct: 1   MINLSIASPSTVSIPLKVLTSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRAK+TEEI EEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKSTEEIKEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of MS012624 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 1.4e-65
Identity = 151/168 (89.88%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           MINLSIASPS+VS PS  LSSTSKSSF G QIR PFS RV  KT   G RNSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of MS012624 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 3.2e-65
Identity = 150/168 (89.29%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           M+NLSIASPS+VS PS  LSSTSKSSF G QIR PFS RV  KT   G RNSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of MS012624 vs. NCBI nr
Match: XP_022985118.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 258.1 bits (658), Expect = 5.4e-65
Identity = 149/168 (88.69%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           MINLSIASPS+V++P+  LSSTSKSSF GLQIR PFS RV  K  C G RNS VVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]

BLAST of MS012624 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-47
Identity = 114/168 (67.86%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 1   MINLSIASPSTVSL--PSTVLSSTSKSSFIGLQIRSPFSVRV-AAKTTCAGSRNSSVVMM 60
           M++LSIA+P T ++    T  ++++ SSF G++I+   S RV AA T  + S   SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]

BLAST of MS012624 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 99/165 (60.00%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 7   ASPSTVSLPSTVLSS-TSKSSFIGLQIRS---PFSVRVAAKTTCAGSRNSSVVMMAKREE 66
           ++P +  L S   S+  +KSSF GL++ S     S+R+  +T       SSVV+M K+E+
Sbjct: 9   STPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTP-----PSSVVVMVKKED 68

Query: 67  ELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRERE 126
           ELKE+R KT E++NEE++ LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKRERE
Sbjct: 69  ELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKRERE 128

Query: 127 IEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS 168
           IE+GVGKRLSRKLD+ WK+SIVVRPPPSLKKL+E+  A  EAEK+
Sbjct: 129 IEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]

BLAST of MS012624 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-36
Identity = 92/159 (57.86%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 2   INLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVR---VAAKTTCAGSRNSSVVMMA 61
           ++L+ ASP   S+P  + +    ++F+ +++    + R   +A  +  A  R +++V MA
Sbjct: 4   MSLAAASP-LASIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMA 63

Query: 62  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KRE+EL+EIRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRKRIARMLTVK
Sbjct: 64  KREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVK 123

Query: 122 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE 158
           REREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 124 REREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]

BLAST of MS012624 vs. ExPASy Swiss-Prot
Match: Q49ZG0 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 65  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

[Close]

BLAST of MS012624 vs. ExPASy Swiss-Prot
Match: Q4L8A6 (50S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=rpmC PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.5e-04
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 65  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 E 126
           E
Sbjct: 64  E 64

[Close]

BLAST of MS012624 vs. ExPASy TrEMBL
Match: A0A6J1C3N4 (50S ribosomal protein L29, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008086 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR
Sbjct: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of MS012624 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.8e-66
Identity = 151/168 (89.88%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           MINLSIASPS+VS PS  LSSTSKSSF G QIR PFS RV  KT   G RNSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of MS012624 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 150/168 (89.29%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           M+NLSIASPS+VS PS  LSSTSKSSF G QIR PFS RV  KT   G RNSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of MS012624 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 149/168 (88.69%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           MINLSIASPS+V++P+  LSSTSKSSF GLQIR PFS RV  K  C G RNS VVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]

BLAST of MS012624 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.2e-63
Identity = 143/164 (87.20%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60
           M+NLSIASPS+V++P+  LSSTSKSSF GLQIR PFS RV  K  C G RNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA 165
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 164

[Close]

BLAST of MS012624 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-48
Identity = 114/168 (67.86%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 1   MINLSIASPSTVSL--PSTVLSSTSKSSFIGLQIRSPFSVRV-AAKTTCAGSRNSSVVMM 60
           M++LSIA+P T ++    T  ++++ SSF G++I+   S RV AA T  + S   SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:

BLAST of MS012624 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136355.1	2.6e-75	100.00	50S ribosomal protein L29, chloroplastic [Momordica charantia]	[more]
XP_038903244.1	2.0e-67	91.67	50S ribosomal protein L29, chloroplastic [Benincasa hispida]	[more]
XP_022941582.1	1.4e-65	89.88	50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1...	[more]
XP_022977189.1	3.2e-65	89.29	50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]	[more]
XP_022985118.1	5.4e-65	88.69	50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of MS012624 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJP3	3.1e-47	67.86	50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P82248	1.3e-37	60.00	50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P...	[more]
Q9SWI6	2.4e-36	57.86	50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1	[more]
Q49ZG0	2.5e-04	48.39	50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (...	[more]
Q4L8A6	5.5e-04	49.18	50S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=27...	[more]

BLAST of MS012624 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3N4	1.2e-75	100.00	50S ribosomal protein L29, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1FMW5	6.8e-66	89.88	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IQR3	1.5e-65	89.29	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JCM6	2.6e-65	88.69	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EMX4	3.2e-63	87.20	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of MS012624 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65220.1	2.2e-48	67.86	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..168
None	No IPR available	PANTHER	PTHR10916:SF1	SUBFAMILY NOT NAMED	coord: 1..168
None	No IPR available	PANTHER	PTHR10916	60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29	coord: 1..168
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 65..121 e-value: 1.45E-15 score: 65.2015
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 63..126 e-value: 4.6E-15 score: 57.3
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 64..124
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 65..121 e-value: 1.8E-14 score: 53.4
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 66..121 e-value: 3.0E-16 score: 57.2
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 62..121 score: 13.662491

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012624.1	MS012624.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome