MS012424 (gene) Bitter gourd (TR) v1

Overview
NameMS012424
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW QUALITY PROTEIN: leucine-rich repeat protein 2-like
Locationscaffold63: 595590 .. 598127 (-)
RNA-Seq ExpressionMS012424
SyntenyMS012424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAGAAACTTGGAGAAGCAAAAAGGCGCCAAGGGTACTTTCTCTTTCCTTACTGTTCCAGTCACTTCCATTGGGTTCTTGTTTTTTTTCTTTCTCAATCTGCAATCGGTTTCTTCAGTTTTTCCATTTTTCTTGATCTGTTTTAGGGGTTTTTTTAAATTTTGATCTCGTTGTTGATCTGATCTTGTGCAGGAAGCCAGCTCGATTCCAACAAAAAAGCCATGACTATCCAGGTAGTGTCGTTGATTGCAGTTCTCCGTCTTCTTTTTCGTTCTCGGAATTCCATTATCTGCTTTATCTATTCAATATCTAGTGCAATTTTATTCCTTAATGGGCTGCGAGAAAGGGTTTTTTCTCAATAGTTTTGCTAATTGACCCGTAAGCTAATTTGATTTCGGCACGAAGTCTTGTGGATGAAAATGAACAGCCCTTACGGGGTATAAGACACTTTTTAGGAATACATCTTAATTCGACTTAGTTTAACCTTTTAAAAGGGTAAAGGCGACCCTGAGGCTTTTCCTCCCAAAGATGTTAGGTGTAAGCTTGGAGGCAATACAAATCCTAAATTTGTATGATCGAAGTATTGCTGAACTTAATAGTTATATAGAATTATAAAAAATAAAAATCACGCCTGTCAATTGCCGCTTAAATAAAAATTTTAAAAGGACATCCTTCATCACTACTATTTAGCCTGAAAGGATCAAGACTTTTATAAACCAATCAAGTTCCTTTTGAGCCAAAAGAGTCCAGAAAAAGGGCTCTAACAAAGTTTAGGAAAGGATCTGCCTGTCTCTTTTTTGAAGGAATGCCCCACCATTATCAAGGGAAGAAGCGTGCCTGTGTCCTTGGGAAAGGATCAAGTGCCATTTAAATGTGCAAAGCAACTAACTCCATATGTTGCAGCTAGTAGTTGTAAGATCACAGCATTCGCTTTTATGTGTACCCTGAAAAGTTGTATCCCAGTGTCTCTTACTCCATCTTGCTGAATTATCATTGTAGCATGACTTTTGATAGGGAATACGTGCATCAATTCCTTTAGTTGTCATGCTTACAGGTTAAATTAAGACCCGGGAGTTTAGAAATATAGCATAACTTACCATGAATACTATATTCATAATCTATTTCCATTCAACTGGTGGCAACCTGTGCTCATCACCTGAGCATATTACAAGCGTTCGATTCAATTGTGTAACATGTAGAGGTGGATAATATAAACTCACTACATCTGCCATTACCCAATTCTCCTTCGGGTTCCGAGTTTTATGAACCTAGTATGAGTGTTCTCACAACAGTTACCTTGTCTAAATCTTTTATTGGCACCTTAACATTTTGGCTGAGGTCTTCTTCTATAACCATCAATAGTGTTACTGAGCTGGAAGCAAACTAGGGAATAGCCTATAATTCTCAAGTCATTAAGGAAGCATTTACTCTCGACACATTTGGGAGTATCAAACATTATACTCAAAAAAAAATTTAACGGTGTATGAATCTGAACTATGACAGCAATTTTCCTGATATTCTGTACTTTGATGTTGATATAAACTACATCAGACATGACATGTTTAAAATAAATATTGTTTACGTGCTCCATAAGTCAAGAGAGACCAGTGATATCTTGAAAAATAAGCTGCGTCTGGCAATGATGCTTATTGTAGCTTCTATCTGTTACTATAAAATGTCTTGTATATCAGTTTCATTACATGTTGGCTACTTACTGGGAAAAAAAGAGAGAAACTGTTTGTAGGGGGTAGAAAAGATTGCGGGGTCTCACTTTCACTTCCTCTCCGTAAATCAGTGATTTTCTGATGAACTTGTGTACCTTTCTTTACTTGAATGTCAGTACTCAAGTTCCTTTGGCTGCATGATTCTAGGTTTTGTCATTTAGAAAACGGGTAACCTAGCTATGTTTGGAAGTTCTTTTGGCAGAGAATCATACAATCAAAGAAGCACAACCATGAACATAGCAACACATCAATTTTCAAAAAGACAGAAGGCAATCTATAAGATATTTTTTCTAAACACCATTTTCCTACACTTTATTCACATTTTGGTCAATGTTTTTTATTCTCATCGCAGTTATATCCCTAATCCCCTTAATGATATCACATTTCCGAGCAACAATGAGATCAAACCTCTCACCGAATACACAAGGGCTTTCAAACAAAAAGTTCCATCTCGAAATTATTCTCACATCTTCTCACACCACTCCATTGGGGGACTTTCACAAGTGAATTTTCTTTGTTTTCTATTTCGATCCATACTTTTAAAGTTTCAACTTCTTATGTCCATTTTGTTTTGAACTGTGCCCTCCGACATCGATATCTGCTCGAACTACCGTGGAATGCCTCTTAGTTTATAACTTTTTGACATTGGATGGTGCAGTGCAAGGTGTGCATGCAGACATTTATGTGTACAACCTCAGAGGTGAAATGTAGGGAGCATGCTGAAGCAAAACACCCAAAAGCTGATGTTTCCACCTGTTTCCCCCATCTTCAGAAG

mRNA sequence

ATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAGAAACTTGGAGAAGCAAAAAGGCGCCAAGGGAAGCCAGCTCGATTCCAACAAAAAAGCCATGACTATCCAGTGCAAGGTGTGCATGCAGACATTTATGTGTACAACCTCAGAGGTGAAATGTAGGGAGCATGCTGAAGCAAAACACCCAAAAGCTGATGTTTCCACCTGTTTCCCCCATCTTCAGAAG

Coding sequence (CDS)

ATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAGAAACTTGGAGAAGCAAAAAGGCGCCAAGGGAAGCCAGCTCGATTCCAACAAAAAAGCCATGACTATCCAGTGCAAGGTGTGCATGCAGACATTTATGTGTACAACCTCAGAGGTGAAATGTAGGGAGCATGCTGAAGCAAAACACCCAAAAGCTGATGTTTCCACCTGTTTCCCCCATCTTCAGAAG

Protein sequence

MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAEAKHPKADVSTCFPHLQK
Homology
[Close]
BLAST of MS012424 vs. NCBI nr
Match: XP_022149288.1 (uncharacterized protein At2g23090-like [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPKADVSTCFPHLQK
Sbjct: 61 AKHPKADVSTCFPHLQK 77

[Close]
BLAST of MS012424 vs. NCBI nr
Match: XP_004152272.1 (uncharacterized protein At2g23090 [Cucumis sativus] >XP_008454381.1 PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KGN52779.1 hypothetical protein Csa_015338 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 1.5e-33
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPK+DV TCFPHLQK
Sbjct: 61 AKHPKSDVFTCFPHLQK 77

[Close]
BLAST of MS012424 vs. NCBI nr
Match: XP_022941597.1 (uncharacterized protein At2g23090-like [Cucurbita moschata])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARE+NLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPK+DV  CFPHLQK
Sbjct: 61 AKHPKSDVYACFPHLQK 77

[Close]
BLAST of MS012424 vs. NCBI nr
Match: XP_023552184.1 (uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
           MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTF+CTTSEVKCREHAE
Sbjct: 38  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFICTTSEVKCREHAE 97

Query: 61  AKHPKADVSTCFPHLQK 78
           AKHPK+DV +CFPHLQK
Sbjct: 98  AKHPKSDVFSCFPHLQK 114

[Close]
BLAST of MS012424 vs. NCBI nr
Match: XP_022922955.1 (uncharacterized protein At2g23090-like [Cucurbita moschata] >XP_022984540.1 uncharacterized protein At2g23090-like [Cucurbita maxima] >KAG6576924.1 hypothetical protein SDJN03_24498, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTF+CTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPK+DV +CFPHLQK
Sbjct: 61 AKHPKSDVFSCFPHLQK 77

[Close]
BLAST of MS012424 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-28
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGA-KGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHA 60
          MGGGN QK+ MAR +NLEK K A KGSQL++NKKAM+IQCKVCMQTF+CTTSEVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EAKHPKADVSTCFPHLQK 78
          EAKHPKADV  CFPHL+K
Sbjct: 61 EAKHPKADVVACFPHLKK 78

[Close]
BLAST of MS012424 vs. ExPASy TrEMBL
Match: A0A6J1D6E9 (uncharacterized protein At2g23090-like OS=Momordica charantia OX=3673 GN=LOC111017741 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.4e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPKADVSTCFPHLQK
Sbjct: 61 AKHPKADVSTCFPHLQK 77

[Close]
BLAST of MS012424 vs. ExPASy TrEMBL
Match: A0A0A0KV37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000980 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPK+DV TCFPHLQK
Sbjct: 61 AKHPKSDVFTCFPHLQK 77

[Close]
BLAST of MS012424 vs. ExPASy TrEMBL
Match: A0A1S3BZP7 (uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103494797 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPK+DV TCFPHLQK
Sbjct: 61 AKHPKSDVFTCFPHLQK 77

[Close]
BLAST of MS012424 vs. ExPASy TrEMBL
Match: A0A6J1J8V9 (uncharacterized protein At2g23090-like OS=Cucurbita maxima OX=3661 GN=LOC111482805 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-33
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTF+CTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPK+DV +CFPHLQK
Sbjct: 61 AKHPKSDVFSCFPHLQK 77

[Close]
BLAST of MS012424 vs. ExPASy TrEMBL
Match: A0A6J1EA95 (uncharacterized protein At2g23090-like OS=Cucurbita moschata OX=3662 GN=LOC111430780 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-33
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTF+CTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVSTCFPHLQK 78
          AKHPK+DV +CFPHLQK
Sbjct: 61 AKHPKSDVFSCFPHLQK 77

[Close]
BLAST of MS012424 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-29
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 1  MGGGNGQKAKMARERNLEKQKGA-KGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHA 60
          MGGGN QK+ MAR +NLEK K A KGSQL++NKKAM+IQCKVCMQTF+CTTSEVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EAKHPKADVSTCFPHLQK 78
          EAKHPKADV  CFPHL+K
Sbjct: 61 EAKHPKADVVACFPHLKK 78

The following BLAST results are available for this feature:
BLAST of MS012424 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149288.11.3e-34100.00uncharacterized protein At2g23090-like [Momordica charantia][more]
XP_004152272.11.5e-3397.40uncharacterized protein At2g23090 [Cucumis sativus] >XP_008454381.1 PREDICTED: u... [more]
XP_022941597.11.2e-3294.81uncharacterized protein At2g23090-like [Cucurbita moschata][more]
XP_023552184.11.2e-3294.81uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo][more]
XP_022922955.11.2e-3294.81uncharacterized protein At2g23090-like [Cucurbita moschata] >XP_022984540.1 unch... [more]
BLAST of MS012424 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O648181.9e-2880.77Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P... [more]
BLAST of MS012424 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D6E96.4e-35100.00uncharacterized protein At2g23090-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A0A0KV377.1e-3497.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000980 PE=4 SV=1[more]
A0A1S3BZP77.1e-3497.40uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103494797 P... [more]
A0A6J1J8V96.0e-3394.81uncharacterized protein At2g23090-like OS=Cucurbita maxima OX=3661 GN=LOC1114828... [more]
A0A6J1EA956.0e-3394.81uncharacterized protein At2g23090-like OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
BLAST of MS012424 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G23090.11.4e-2980.77Uncharacterised protein family SERF [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERF, N-terminalPFAMPF044194F5coord: 3..35
e-value: 4.6E-7
score: 30.6
IPR026939ZNF706/At2g23090 superfamilyGENE3D4.10.1050.10coord: 1..77
e-value: 2.1E-34
score: 119.8
IPR039438At2g23090-like, zinc-binding domainPFAMPF12907zf-met2coord: 38..75
e-value: 3.4E-21
score: 75.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR33788:SF16BNAA09G42210D PROTEINcoord: 1..77
NoneNo IPR availableSUPERFAMILY118359Expressed protein At2g23090/F21P24.15coord: 1..76
IPR039713At2g23090-likePANTHERPTHR33788OS07G0114300 PROTEINcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012424.1MS012424.1mRNA