MS012313 (gene) Bitter gourd (TR) v1

Overview


Name	MS012313
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zf-RVT domain-containing protein
Location	scaffold317: 194895 .. 195398 (+)
RNA-Seq Expression	MS012313
Synteny	MS012313

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCTCTATTACGGGGCCAAAGAGATCCTAAAGATTCAAAAATTTCGGAGGATTGTGTCCTACACTGGATTCTATCTCTTCGTTTCCGTTTTGAGCTACGCTTATACAAGCAATACGTGAGTTAGAGACCATGGCTCATTCATTTCTCTCCATTATTTTTGTTCTCTTATTGTTCTTCTGGGTGTACTGCAGAACTAGAGCTGGGTATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACGGAGCTCTTGACAGACACTGCGAAGGTCTGTACATTCTTTGATTTTGGGTTCCAATTTTTGTTATTTCTAAACTCTTGTTCTAATTCTTTTTTGTTTCACATTGTTTGCTGTAGCTATACAAAGCTGCTCTTGGGAATTGTTTTGAGTCAGAAGAATGGGGTCCGATTGAGTTCTGTATCATGGCAAAACATTTTGAGCGCCAAGGGAAATCTCCATATGCATATCATGCTGTAAGTTTGCCTTGTCTTTGG

mRNA sequence

ATGCGGCTCTATTACGGGGCCAAAGAGATCCTAAAGATTCAAAAATTTCGGAGGATTGTGTCCTACACTGGATTCTATCTCTTCGTTTCCGTTTTGAGCTACGCTTATACAAGCAATACAACTAGAGCTGGGTATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACGGAGCTCTTGACAGACACTGCGAAGCTATACAAAGCTGCTCTTGGGAATTGTTTTGAGTCAGAAGAATGGGGTCCGATTGAGTTCTGTATCATGGCAAAACATTTTGAGCGCCAAGGGAAATCTCCATATGCATATCATGCTGTAAGTTTGCCTTGTCTTTGG

Coding sequence (CDS)

ATGCGGCTCTATTACGGGGCCAAAGAGATCCTAAAGATTCAAAAATTTCGGAGGATTGTGTCCTACACTGGATTCTATCTCTTCGTTTCCGTTTTGAGCTACGCTTATACAAGCAATACAACTAGAGCTGGGTATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACGGAGCTCTTGACAGACACTGCGAAGCTATACAAAGCTGCTCTTGGGAATTGTTTTGAGTCAGAAGAATGGGGTCCGATTGAGTTCTGTATCATGGCAAAACATTTTGAGCGCCAAGGGAAATCTCCATATGCATATCATGCTGTAAGTTTGCCTTGTCTTTGG

Protein sequence

MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTELLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHAVSLPCLW

Homology

[Close]

BLAST of MS012313 vs. NCBI nr
Match: XP_022150012.1 (uncharacterized protein LOC111018291 isoform X2 [Momordica charantia])

HSP 1 Score: 221.1 bits (562), Expect = 4.9e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 91  MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 150

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA
Sbjct: 151 LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 196

[Close]

BLAST of MS012313 vs. NCBI nr
Match: XP_022150011.1 (uncharacterized protein LOC111018291 isoform X1 [Momordica charantia])

HSP 1 Score: 221.1 bits (562), Expect = 4.9e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 96  MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 155

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA
Sbjct: 156 LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 201

[Close]

BLAST of MS012313 vs. NCBI nr
Match: XP_022976595.1 (uncharacterized protein LOC111476941 [Cucurbita maxima] >XP_022976600.1 uncharacterized protein LOC111476941 [Cucurbita maxima] >XP_022976608.1 uncharacterized protein LOC111476941 [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-52
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           MRLYYGAKE+LKIQKFRR+VSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MRLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDT KLYKAALGNCFE EEWGPIEFC+MAKHFERQGKSPYAYH+
Sbjct: 61  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHS 106

[Close]

BLAST of MS012313 vs. NCBI nr
Match: XP_004149132.1 (uncharacterized protein LOC101204884 [Cucumis sativus] >KGN49556.1 hypothetical protein Csa_018495 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           MRLYYGAKEILKIQKFRRIVSYTGFYLF SVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFASVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDT KLYKAALGNCFE EEWGPIEFCIMAKHF+RQGKSPYAYH+
Sbjct: 61  LLTDTTKLYKAALGNCFELEEWGPIEFCIMAKHFDRQGKSPYAYHS 106

[Close]

BLAST of MS012313 vs. NCBI nr
Match: XP_022942452.1 (uncharacterized protein LOC111447487 [Cucurbita moschata] >XP_022942453.1 uncharacterized protein LOC111447487 [Cucurbita moschata] >XP_022942454.1 uncharacterized protein LOC111447487 [Cucurbita moschata] >XP_023534356.1 uncharacterized protein LOC111795941 [Cucurbita pepo subsp. pepo] >XP_023534363.1 uncharacterized protein LOC111795941 [Cucurbita pepo subsp. pepo] >KAG7030572.1 hypothetical protein SDJN02_04609 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-51
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           M LYYGAKE+LKIQKFRR+VSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDT KLYKAALGNCFE EEWGPIEFC+MAKHFERQGKSPYAYH+
Sbjct: 61  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHS 106

[Close]

BLAST of MS012313 vs. ExPASy TrEMBL
Match: A0A6J1DA58 (uncharacterized protein LOC111018291 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018291 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.4e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 96  MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 155

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA
Sbjct: 156 LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 201

[Close]

BLAST of MS012313 vs. ExPASy TrEMBL
Match: A0A6J1D9J7 (uncharacterized protein LOC111018291 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018291 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.4e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 91  MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 150

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA
Sbjct: 151 LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 196

[Close]

BLAST of MS012313 vs. ExPASy TrEMBL
Match: A0A6J1IJX1 (uncharacterized protein LOC111476941 OS=Cucurbita maxima OX=3661 GN=LOC111476941 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           MRLYYGAKE+LKIQKFRR+VSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MRLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDT KLYKAALGNCFE EEWGPIEFC+MAKHFERQGKSPYAYH+
Sbjct: 61  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHS 106

[Close]

BLAST of MS012313 vs. ExPASy TrEMBL
Match: A0A0A0KPE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001030 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           MRLYYGAKEILKIQKFRRIVSYTGFYLF SVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFASVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDT KLYKAALGNCFE EEWGPIEFCIMAKHF+RQGKSPYAYH+
Sbjct: 61  LLTDTTKLYKAALGNCFELEEWGPIEFCIMAKHFDRQGKSPYAYHS 106

[Close]

BLAST of MS012313 vs. ExPASy TrEMBL
Match: A0A6J1FUV5 (uncharacterized protein LOC111447487 OS=Cucurbita moschata OX=3662 GN=LOC111447487 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60
           M LYYGAKE+LKIQKFRR+VSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60

Query: 61  LLTDTAKLYKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           LLTDT KLYKAALGNCFE EEWGPIEFC+MAKHFERQGKSPYAYH+
Sbjct: 61  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHS 106

[Close]

BLAST of MS012313 vs. TAIR 10
Match: AT1G14990.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-46
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 9   EILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTELLTDTAKL 68
           E++KIQK RR VSY GFY F + L++ YT+NTTRAGYSRGDQFYASYPAGTELLTDTAKL
Sbjct: 9   EVIKIQKLRRAVSYAGFYCFTAALTFFYTNNTTRAGYSRGDQFYASYPAGTELLTDTAKL 68

Query: 69  YKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHAVS 109
           YKAALGNC+ESE+WGP+EFCIMAKHF+RQGKSPY YH+VS
Sbjct: 69  YKAALGNCYESEDWGPVEFCIMAKHFDRQGKSPYVYHSVS 108

[Close]

BLAST of MS012313 vs. TAIR 10
Match: AT1G14990.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 178.7 bits (452), Expect = 2.6e-45
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 9   EILKIQKFRRIVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTELLTDTAKL 68
           E++KIQK RR VSY GFY F + L++ YT+NTTRAGYSRGDQFYASYPAGTELLTDTAKL
Sbjct: 9   EVIKIQKLRRAVSYAGFYCFTAALTFFYTNNTTRAGYSRGDQFYASYPAGTELLTDTAKL 68

Query: 69  YKAALGNCFESEEWGPIEFCIMAKHFERQGKSPYAYHA 107
           YKAALGNC+ESE+WGP+EFCIMAKHF+RQGKSPY YH+
Sbjct: 69  YKAALGNCYESEDWGPVEFCIMAKHFDRQGKSPYVYHS 106

The following BLAST results are available for this feature:

BLAST of MS012313 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150012.1	4.9e-54	100.00	uncharacterized protein LOC111018291 isoform X2 [Momordica charantia]	[more]
XP_022150011.1	4.9e-54	100.00	uncharacterized protein LOC111018291 isoform X1 [Momordica charantia]	[more]
XP_022976595.1	4.6e-52	94.34	uncharacterized protein LOC111476941 [Cucurbita maxima] >XP_022976600.1 uncharac...	[more]
XP_004149132.1	1.0e-51	95.28	uncharacterized protein LOC101204884 [Cucumis sativus] >KGN49556.1 hypothetical ...	[more]
XP_022942452.1	3.0e-51	93.40	uncharacterized protein LOC111447487 [Cucurbita moschata] >XP_022942453.1 unchar...	[more]

BLAST of MS012313 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012313 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DA58	2.4e-54	100.00	uncharacterized protein LOC111018291 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D9J7	2.4e-54	100.00	uncharacterized protein LOC111018291 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1IJX1	2.2e-52	94.34	uncharacterized protein LOC111476941 OS=Cucurbita maxima OX=3661 GN=LOC111476941...	[more]
A0A0A0KPE6	4.9e-52	95.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001030 PE=4 SV=1	[more]
A0A6J1FUV5	1.4e-51	93.40	uncharacterized protein LOC111447487 OS=Cucurbita moschata OX=3662 GN=LOC1114474...	[more]

BLAST of MS012313 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14990.2	3.1e-46	81.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G14990.1	2.6e-45	80.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36712	TRANSMEMBRANE PROTEIN	coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012313.1	MS012313.1	mRNA