MS012304 (gene) Bitter gourd (TR) v1

Overview
NameMS012304
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA helicase
Locationscaffold317: 58671 .. 58882 (+)
RNA-Seq ExpressionMS012304
SyntenyMS012304
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAATACCAAATTCAGACAGGTAGATTAGCGCATCACTCTTCTGTCTCAGGTTCCATTATGTTCTCTCGATGCTACCAAAGTTGTGCTTAAGAACAAAGCACAAGTATGCAGGTAAGTTGTTTGAAGAAGTAGACAAATATGGCGCTGCAAGCATATCGAATCGGGCAAAGTTGCTAAATAAGGTAGGGAAATTGTATGTAAATATT

mRNA sequence

ATGGTGAAATACCAAATTCAGACAGGTAGATTAGCGCATCACTTCTGTCTCAGGTTCCATTATGTTCTCTCGATGCTACCAAAGTTGTGCTTAAGAACAAAGCACAAGTATGCAGGTAAGTTGTTTGAAGAAGTAGACAAATATGGCGCTGCAAGCATATCGAATCGGGCAAAGTTGCTAAATAAGGTAGGGAAATTGTATGTAAATATT

Coding sequence (CDS)

ATGGTGAAATACCAAATTCAGACAGGTAGATTAGCGCATCACTTCTGTCTCAGGTTCCATTATGTTCTCTCGATGCTACCAAAGTTGTGCTTAAGAACAAAGCACAAGTATGCAGGTAAGTTGTTTGAAGAAGTAGACAAATATGGCGCTGCAAGCATATCGAATCGGGCAAAGTTGCTAAATAAGGTAGGGAAATTGTATGTAAATATT

Protein sequence

MVKYQIQTGRLAHHFCLRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKVGKLYVNI
Homology
[Close]
BLAST of MS012304 vs. NCBI nr
Match: XP_031742292.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 0 

Query: 1  MVKYQIQTGRLAHH-FCLRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKL 60
          M KYQIQT RLAHH FCLR HYVLSMLPKLCLRTKHK+AG LF E+ KY  A+I  R KL
Sbjct: 1  MAKYQIQTSRLAHHLFCLRSHYVLSMLPKLCLRTKHKFAGNLF-ELGKYATATIPIRPKL 60

Query: 61 LNKVGKL 67
          L K+GKL
Sbjct: 61 LIKLGKL 66

[Close]
BLAST of MS012304 vs. NCBI nr
Match: XP_022150020.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 17 LRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKV 64
          +RFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNK+
Sbjct: 40 MRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKM 86

[Close]
BLAST of MS012304 vs. NCBI nr
Match: XP_022150022.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 17 LRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKV 64
          +RFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNK+
Sbjct: 40 MRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKM 86

[Close]
BLAST of MS012304 vs. NCBI nr
Match: XP_022150024.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X4 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 17 LRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKV 64
          +RFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNK+
Sbjct: 40 MRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKM 86

[Close]
BLAST of MS012304 vs. NCBI nr
Match: XP_022150023.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X3 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 17 LRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKV 64
          +RFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNK+
Sbjct: 40 MRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKM 86

[Close]
BLAST of MS012304 vs. ExPASy TrEMBL
Match: A0A6J1D8C5 (DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 17 LRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKV 64
          +RFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNK+
Sbjct: 40 MRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKM 86

[Close]
BLAST of MS012304 vs. ExPASy TrEMBL
Match: A0A6J1D9K8 (DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 17 LRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKV 64
          +RFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNK+
Sbjct: 40 MRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKM 86

[Close]
BLAST of MS012304 vs. ExPASy TrEMBL
Match: A0A6J1D7B7 (DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 17 LRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKV 64
          +RFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNK+
Sbjct: 40 MRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKM 86

[Close]
BLAST of MS012304 vs. ExPASy TrEMBL
Match: A0A6J1D8T6 (DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 17 LRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKV 64
          +RFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNK+
Sbjct: 40 MRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKM 86

[Close]
BLAST of MS012304 vs. ExPASy TrEMBL
Match: A0A1S3C041 (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103495086 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 0 

Query: 1  MVKYQIQTGRLAHH-FCLRFHYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKL 60
          M KYQIQT RLAHH FCLR HYVLSMLPKLCLRTKH++AG LF E+ KY   SI  R KL
Sbjct: 1  MAKYQIQTSRLAHHLFCLRSHYVLSMLPKLCLRTKHEFAGNLF-ELGKYATTSIPIRPKL 60

Query: 61 LNKV 64
          L K+
Sbjct: 61 LIKI 63

[Close]
BLAST of MS012304 vs. TAIR 10
Match: AT2G01440.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 20 HYVLSMLPKLCLRTKHKYAGKLFEEVDKYGAASISNRAKLLNKVGKL 67
          ++  S +  +  R+KHKY+  L E+V+KY +A + N++KL+ KV  L
Sbjct: 38 NFFFSKVWNISYRSKHKYSDNLLEQVEKYASARLENQSKLITKVAAL 84

The following BLAST results are available for this feature:
BLAST of MS012304 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031742292.12.5e-1674.63ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucumis sativ... [more]
XP_022150020.12.5e-1695.74ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Momordica cha... [more]
XP_022150022.12.5e-1695.74ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Momordica cha... [more]
XP_022150024.12.5e-1695.74ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X4 [Momordica cha... [more]
XP_022150023.12.5e-1695.74ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X3 [Momordica cha... [more]
BLAST of MS012304 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS012304 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D8C51.2e-1695.74DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1[more]
A0A6J1D9K81.2e-1695.74DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1[more]
A0A6J1D7B71.2e-1695.74DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1[more]
A0A6J1D8T61.2e-1695.74DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1[more]
A0A1S3C0411.5e-1471.88DNA helicase OS=Cucumis melo OX=3656 GN=LOC103495086 PE=3 SV=1[more]
BLAST of MS012304 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G01440.11.1e-0438.30DEAD/DEAH box RNA helicase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012304.1MS012304.1mRNA