MS012207 (gene) Bitter gourd (TR) v1

Overview


Name	MS012207
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold797: 430290 .. 430715 (-)
RNA-Seq Expression	MS012207
Synteny	MS012207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAGTCCTTGAAGGATGTCGATATTAAGCCTAAGGTGACCATGAACAAGAATCCTAGTTGTGATTATGTCTTGACCCGTCGAGCATCGGGTAGATCGGAATCCTCTGATCGAGTGAAGGGAGAAGGAGGTTTGAGCAAACCTAGTGCAGGCTTTCACACTACAAAACTCGCCCCTAAACGAGAGAGAACACAAGAGAAGGAAGATGAGGAGGAGATGAAAAAACCCGCCCCTAAACGAGAGAGAACGCAAGAGAAGGAAGATGAGGAGGAGATAAAGATGTTGTATCGACGAATTAAGGAGTTGGAAGAGCAAATACGGCTAAAGCAAATCCCTCCCATTTCTGAGCATGGCAGTTGTGATGAACAACATTCAGATGAAGAGATATTAGGACCTGCTAATAATTGGAACTTCAAAAAGGTGATA

mRNA sequence

GATGAGTCCTTGAAGGATGTCGATATTAAGCCTAAGGTGACCATGAACAAGAATCCTAGTTGTGATTATGTCTTGACCCGTCGAGCATCGGGTAGATCGGAATCCTCTGATCGAGTGAAGGGAGAAGGAGGTTTGAGCAAACCTAGTGCAGGCTTTCACACTACAAAACTCGCCCCTAAACGAGAGAGAACACAAGAGAAGGAAGATGAGGAGGAGATGAAAAAACCCGCCCCTAAACGAGAGAGAACGCAAGAGAAGGAAGATGAGGAGGAGATAAAGATGTTGTATCGACGAATTAAGGAGTTGGAAGAGCAAATACGGCTAAAGCAAATCCCTCCCATTTCTGAGCATGGCAGTTGTGATGAACAACATTCAGATGAAGAGATATTAGGACCTGCTAATAATTGGAACTTCAAAAAGGTGATA

Coding sequence (CDS)

GATGAGTCCTTGAAGGATGTCGATATTAAGCCTAAGGTGACCATGAACAAGAATCCTAGTTGTGATTATGTCTTGACCCGTCGAGCATCGGGTAGATCGGAATCCTCTGATCGAGTGAAGGGAGAAGGAGGTTTGAGCAAACCTAGTGCAGGCTTTCACACTACAAAACTCGCCCCTAAACGAGAGAGAACACAAGAGAAGGAAGATGAGGAGGAGATGAAAAAACCCGCCCCTAAACGAGAGAGAACGCAAGAGAAGGAAGATGAGGAGGAGATAAAGATGTTGTATCGACGAATTAAGGAGTTGGAAGAGCAAATACGGCTAAAGCAAATCCCTCCCATTTCTGAGCATGGCAGTTGTGATGAACAACATTCAGATGAAGAGATATTAGGACCTGCTAATAATTGGAACTTCAAAAAGGTGATA

Protein sequence

DESLKDVDIKPKVTMNKNPSCDYVLTRRASGRSESSDRVKGEGGLSKPSAGFHTTKLAPKRERTQEKEDEEEMKKPAPKRERTQEKEDEEEIKMLYRRIKELEEQIRLKQIPPISEHGSCDEQHSDEEILGPANNWNFKKVI

Homology

[Close]

BLAST of MS012207 vs. NCBI nr
Match: XP_022148697.1 (uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148699.1 uncharacterized protein LOC111017298 [Momordica charantia])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 119/140 (85.00%), Postives = 119/140 (85.00%), Query Frame = 0


Query: 1   DESLKDVDIKPKVTMNKNPSCDYVLTRRASGRSESSDRVKGEGGLSKPSAGFHTTKLAPK 60
           DESLKDVDIK KVTMNKNPSCDYV TRRASGRSESSDRVKGEGGLSKPSAGFHTTKL   
Sbjct: 445 DESLKDVDIKRKVTMNKNPSCDYVSTRRASGRSESSDRVKGEGGLSKPSAGFHTTKL--- 504

Query: 61  RERTQEKEDEEEMKKPAPKRERTQEKEDEEEIKMLYRRIKELEEQIRLKQIPPISEHGSC 120
                           APKRERTQEKEDEEEIKMLYRRIKELEEQIRLKQIPPISEHGSC
Sbjct: 505 ----------------APKRERTQEKEDEEEIKMLYRRIKELEEQIRLKQIPPISEHGSC 564

Query: 121 DEQHSDEEILGPANNWNFKK 141
           DEQHSDEEILGPANNWNFKK
Sbjct: 565 DEQHSDEEILGPANNWNFKK 565

[Close]

BLAST of MS012207 vs. ExPASy TrEMBL
Match: A0A6J1D4R5 (uncharacterized protein LOC111017298 OS=Momordica charantia OX=3673 GN=LOC111017298 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.7e-54
Identity = 119/140 (85.00%), Postives = 119/140 (85.00%), Query Frame = 0


Query: 1   DESLKDVDIKPKVTMNKNPSCDYVLTRRASGRSESSDRVKGEGGLSKPSAGFHTTKLAPK 60
           DESLKDVDIK KVTMNKNPSCDYV TRRASGRSESSDRVKGEGGLSKPSAGFHTTKL   
Sbjct: 445 DESLKDVDIKRKVTMNKNPSCDYVSTRRASGRSESSDRVKGEGGLSKPSAGFHTTKL--- 504

Query: 61  RERTQEKEDEEEMKKPAPKRERTQEKEDEEEIKMLYRRIKELEEQIRLKQIPPISEHGSC 120
                           APKRERTQEKEDEEEIKMLYRRIKELEEQIRLKQIPPISEHGSC
Sbjct: 505 ----------------APKRERTQEKEDEEEIKMLYRRIKELEEQIRLKQIPPISEHGSC 564

Query: 121 DEQHSDEEILGPANNWNFKK 141
           DEQHSDEEILGPANNWNFKK
Sbjct: 565 DEQHSDEEILGPANNWNFKK 565

The following BLAST results are available for this feature:

BLAST of MS012207 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148697.1	1.8e-53	85.00	uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncha...	[more]

BLAST of MS012207 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4R5	8.7e-54	85.00	uncharacterized protein LOC111017298 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of MS012207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012207.1	MS012207.1	mRNA