MS012131 (gene) Bitter gourd (TR) v1

Overview


Name	MS012131
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	GATA transcription factor 16-like
Location	scaffold708: 531332 .. 531873 (+)
RNA-Seq Expression	MS012131
Synteny	MS012131

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTAAAAAGTTCTTCCCTTGATCCGATCATGGCCTCCGTCATTGATCGCCCCGATCCCTCTGCTTCGACCTTCCATCCCTCTCTAATGGGTATTTCGAATCAGAGTCAGCTTAAGTCGGAATCTCAGAAACAGAGGAGCTGCGTCGACTGCCACGCCACCAGAACGCCGCTCTGGAGGGGCGGCCCTGCCGGGCCAAGAGTAAGAACTTCACCATTTAATCTCTCTCCCTAATTTACGAGTTTAATTTGCGGGTTTAGTGGTGATTTGAACGGTGGGTTTTTGGTGTTTGGCAGTCGCTGTGTAATGCGTGTGGGATTAGACACAGGAAGATCAAGATGAGCAGTGGGGGAGTGAATAAGAGCCGGAAGGGGAAGAAATTGGGAAATGGGGGTTCGTTGAAGCTCACGGTGGTGGATTTTCGGAGAGAGATAGTGCTACACAGTGCGGGGGCGGCGATGGCGGATCGAGTTGCAGACGGGATCGGAGAAGATGAACAGGCGGCGGCGATGCTTCTCATGGCTCTCTCTTCCGGCTATGTA

mRNA sequence

CTCTTAAAAAGTTCTTCCCTTGATCCGATCATGGCCTCCGTCATTGATCGCCCCGATCCCTCTGCTTCGACCTTCCATCCCTCTCTAATGGGTATTTCGAATCAGAGTCAGCTTAAGTCGGAATCTCAGAAACAGAGGAGCTGCGTCGACTGCCACGCCACCAGAACGCCGCTCTGGAGGGGCGGCCCTGCCGGGCCAAGATCGCTGTGTAATGCGTGTGGGATTAGACACAGGAAGATCAAGATGAGCAGTGGGGGAGTGAATAAGAGCCGGAAGGGGAAGAAATTGGGAAATGGGGGTTCGTTGAAGCTCACGGTGGTGGATTTTCGGAGAGAGATAGTGCTACACAGTGCGGGGGCGGCGATGGCGGATCGAGTTGCAGACGGGATCGGAGAAGATGAACAGGCGGCGGCGATGCTTCTCATGGCTCTCTCTTCCGGCTATGTA

Coding sequence (CDS)

CTCTTAAAAAGTTCTTCCCTTGATCCGATCATGGCCTCCGTCATTGATCGCCCCGATCCCTCTGCTTCGACCTTCCATCCCTCTCTAATGGGTATTTCGAATCAGAGTCAGCTTAAGTCGGAATCTCAGAAACAGAGGAGCTGCGTCGACTGCCACGCCACCAGAACGCCGCTCTGGAGGGGCGGCCCTGCCGGGCCAAGATCGCTGTGTAATGCGTGTGGGATTAGACACAGGAAGATCAAGATGAGCAGTGGGGGAGTGAATAAGAGCCGGAAGGGGAAGAAATTGGGAAATGGGGGTTCGTTGAAGCTCACGGTGGTGGATTTTCGGAGAGAGATAGTGCTACACAGTGCGGGGGCGGCGATGGCGGATCGAGTTGCAGACGGGATCGGAGAAGATGAACAGGCGGCGGCGATGCTTCTCATGGCTCTCTCTTCCGGCTATGTA

Protein sequence

LLKSSSLDPIMASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGAAMADRVADGIGEDEQAAAMLLMALSSGYV

Homology

[Close]

BLAST of MS012131 vs. NCBI nr
Match: XP_022152091.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 271.6 bits (693), Expect = 4.2e-69
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 11  MASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLC 70
           MASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLC
Sbjct: 1   MASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLC 60

Query: 71  NACGIRHRKIKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGAAMADRVADGI 130
           NACGIRHRK KMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGA MADRVADGI
Sbjct: 61  NACGIRHRKFKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGATMADRVADGI 120

Query: 131 GEDEQAAAMLLMALSSGYV 150
           GEDEQAAAMLLMALSSGYV
Sbjct: 121 GEDEQAAAMLLMALSSGYV 139

[Close]

BLAST of MS012131 vs. NCBI nr
Match: XP_023515141.1 (GATA transcription factor 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-34
Identity = 89/136 (65.44%), Postives = 101/136 (74.26%), Query Frame = 0


Query: 16  DRPDPSASTFHP-SLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACG 75
           + PD S STF+P SLM ISN   L  E QKQR+C  C  TRTPLWR GPAGPRSLCNACG
Sbjct: 7   NHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACG 66

Query: 76  IRHRKIKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGAAMADR-VADGIGED 135
           IR+RK+K S+GGVNKS  GKK+       + VVD  REI+LH A AAMA+   A+ IGE+
Sbjct: 67  IRYRKLKNSNGGVNKSGNGKKV-------VRVVDLGREIMLHRATAAMAENGGAETIGEE 126

Query: 136 EQAAAMLLMALSSGYV 150
           EQAAAMLLMALSSGYV
Sbjct: 127 EQAAAMLLMALSSGYV 135

[Close]

BLAST of MS012131 vs. NCBI nr
Match: XP_022959984.1 (GATA transcription factor 15-like [Cucurbita moschata] >KAG6593223.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030201.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-34
Identity = 89/136 (65.44%), Postives = 101/136 (74.26%), Query Frame = 0


Query: 16  DRPDPSASTFHP-SLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACG 75
           + PD S STF+P SLM ISNQ  L  E QKQR+C  C  TRTPLWR GPAGPRSLCNACG
Sbjct: 7   NHPDLSGSTFNPSSLMAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACG 66

Query: 76  IRHRKIKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGAAMADR-VADGIGED 135
           IR+RK+K S+GGVNKS  GKK+       + VV   REI+LH A AAMA+   A+ IGE+
Sbjct: 67  IRYRKLKNSNGGVNKSVNGKKV-------VRVVGLGREIMLHRATAAMAENGGAETIGEE 126

Query: 136 EQAAAMLLMALSSGYV 150
           EQAAAMLLMALSSGYV
Sbjct: 127 EQAAAMLLMALSSGYV 135

[Close]

BLAST of MS012131 vs. NCBI nr
Match: KAA0046674.1 (GATA transcription factor 15-like [Cucumis melo var. makuwa] >TYK18209.1 GATA transcription factor 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 9.7e-34
Identity = 92/154 (59.74%), Postives = 109/154 (70.78%), Query Frame = 0


Query: 10  IMASVIDR-PDPSASTFHPSLM-GISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPR 69
           IMA +++R  D S STF+PSLM  +S Q   + E++KQR+CV C ATRTPLWR GPAGPR
Sbjct: 12  IMAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPR 71

Query: 70  SLCNACGIRHRKIKMSS----------GGVNKSRKGKKLGNGGSLKLTVVDFRREIVLH- 129
           SLCNACGIR+RK+KM+S             NK  KGKK+G GGSLKL VV   REI++H 
Sbjct: 72  SLCNACGIRYRKMKMNSNNDGEVNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHR 131

Query: 130 SAGAAMADR-VADGIGEDEQAAAMLLMALSSGYV 150
               AM D  VA+ IGE+EQ AAMLLMALSSGYV
Sbjct: 132 RPTTAMEDNGVAESIGEEEQTAAMLLMALSSGYV 165

[Close]

BLAST of MS012131 vs. NCBI nr
Match: XP_023004687.1 (GATA transcription factor 15-like [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 87/136 (63.97%), Postives = 101/136 (74.26%), Query Frame = 0


Query: 16  DRPDPSASTFHP-SLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACG 75
           + PD S STF+P SLM ISNQ  L +E QKQR+C  C  TRTPLWR GPAGPRSLCNACG
Sbjct: 7   NHPDLSGSTFNPSSLMAISNQGLLCTEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACG 66

Query: 76  IRHRKIKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGAAMADR-VADGIGED 135
           IR+RK+K ++GGVNKS  GKK+       + VV   REI+LH   AAMA+   A+ IGE+
Sbjct: 67  IRYRKLKNNNGGVNKSGNGKKV-------VRVVGLGREIMLHRTTAAMAENGGAETIGEE 126

Query: 136 EQAAAMLLMALSSGYV 150
           EQAAAMLLMALSSGYV
Sbjct: 127 EQAAAMLLMALSSGYV 135

[Close]

BLAST of MS012131 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-16
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 7   LDPIMASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGP 66
           LDP    +      S  T   ++   S+ S  ++ S +++SC  C  ++TPLWRGGPAGP
Sbjct: 2   LDPTEKVIDSESMESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGP 61

Query: 67  RSLCNACGIRHRKIKMSSGGVNKSRKGKKLGN-----GGSLKLTVVDFRREIVLHSAGAA 126
           +SLCNACGIR+RK + +        K KK  N     G SLK  +++  RE+++  + A 
Sbjct: 62  KSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKFGDSLKQRLMELGREVMMQRSTAE 121

Query: 127 MADRVADGIGEDEQAAAMLLMALS 146
              R  + +GE+EQ AA+LLMALS
Sbjct: 122 NQRR--NKLGEEEQ-AAVLLMALS 142

[Close]

BLAST of MS012131 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-16
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 40  SESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIKMSSGGVNKSRKGKKLGNG 99
           S + K+++C DC  ++TPLWRGGP GP+SLCNACGIR+RK +   GG   ++K KK  +G
Sbjct: 30  SVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKR--RGGTEDNKKLKKSSSG 89

Query: 100 G-------SLKLTVVDFRREIVLHSAGAAMADRVADGIGEDEQAAAMLLMALSSGYV 150
           G       SLK +++D      L     +  ++    +GE+EQ AA+LLMALS G V
Sbjct: 90  GGNRKFGESLKQSLMD------LGIRKRSTVEKQRQKLGEEEQ-AAVLLMALSYGSV 137

[Close]

BLAST of MS012131 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 37  QLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIKMSS-GGVNKSRKGKK 96
           ++K E    R C +C  T+TP+WRGGP GP+SLCNACGIRHRK + S   G++  R  K 
Sbjct: 17  RMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIHIIRSHKS 76

Query: 97  LGNGGSLKLTVVDFRREIVLHSAGAAMADRVADGIGEDEQAAAMLLM 143
           L +           ++  +L S+   +A +    + E+EQAA  LL+
Sbjct: 77  LAS-----------KKINLLSSSHGGVAVKKRRSLKEEEQAALCLLL 112

[Close]

BLAST of MS012131 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.4e-12
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 40 SESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIKMSSGGVNKSRKGK 95
          S    +R+CVDC   RTPLWRGGPAGP+SLCNACGI+ RK + ++ G+    K K
Sbjct: 36 SSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKK 90

[Close]

BLAST of MS012131 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-10
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 34  NQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIK 82
           +Q QL+      R C DC+ T+TPLWR GP GP+SLCNACGIR RK +
Sbjct: 164 SQQQLQQALGVVRVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211

[Close]

BLAST of MS012131 vs. ExPASy TrEMBL
Match: A0A6J1DGK8 (GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111019883 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 11  MASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLC 70
           MASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLC
Sbjct: 1   MASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLC 60

Query: 71  NACGIRHRKIKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGAAMADRVADGI 130
           NACGIRHRK KMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGA MADRVADGI
Sbjct: 61  NACGIRHRKFKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGATMADRVADGI 120

Query: 131 GEDEQAAAMLLMALSSGYV 150
           GEDEQAAAMLLMALSSGYV
Sbjct: 121 GEDEQAAAMLLMALSSGYV 139

[Close]

BLAST of MS012131 vs. ExPASy TrEMBL
Match: A0A6J1H9M3 (GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111460872 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.8e-34
Identity = 89/136 (65.44%), Postives = 101/136 (74.26%), Query Frame = 0


Query: 16  DRPDPSASTFHP-SLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACG 75
           + PD S STF+P SLM ISNQ  L  E QKQR+C  C  TRTPLWR GPAGPRSLCNACG
Sbjct: 7   NHPDLSGSTFNPSSLMAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACG 66

Query: 76  IRHRKIKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGAAMADR-VADGIGED 135
           IR+RK+K S+GGVNKS  GKK+       + VV   REI+LH A AAMA+   A+ IGE+
Sbjct: 67  IRYRKLKNSNGGVNKSVNGKKV-------VRVVGLGREIMLHRATAAMAENGGAETIGEE 126

Query: 136 EQAAAMLLMALSSGYV 150
           EQAAAMLLMALSSGYV
Sbjct: 127 EQAAAMLLMALSSGYV 135

[Close]

BLAST of MS012131 vs. ExPASy TrEMBL
Match: A0A5A7TUD0 (GATA transcription factor 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001480 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.7e-34
Identity = 92/154 (59.74%), Postives = 109/154 (70.78%), Query Frame = 0


Query: 10  IMASVIDR-PDPSASTFHPSLM-GISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPR 69
           IMA +++R  D S STF+PSLM  +S Q   + E++KQR+CV C ATRTPLWR GPAGPR
Sbjct: 12  IMAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPR 71

Query: 70  SLCNACGIRHRKIKMSS----------GGVNKSRKGKKLGNGGSLKLTVVDFRREIVLH- 129
           SLCNACGIR+RK+KM+S             NK  KGKK+G GGSLKL VV   REI++H 
Sbjct: 72  SLCNACGIRYRKMKMNSNNDGEVNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHR 131

Query: 130 SAGAAMADR-VADGIGEDEQAAAMLLMALSSGYV 150
               AM D  VA+ IGE+EQ AAMLLMALSSGYV
Sbjct: 132 RPTTAMEDNGVAESIGEEEQTAAMLLMALSSGYV 165

[Close]

BLAST of MS012131 vs. ExPASy TrEMBL
Match: A0A6J1KR45 (GATA transcription factor 15-like OS=Cucurbita maxima OX=3661 GN=LOC111497907 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.1e-34
Identity = 87/136 (63.97%), Postives = 101/136 (74.26%), Query Frame = 0


Query: 16  DRPDPSASTFHP-SLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACG 75
           + PD S STF+P SLM ISNQ  L +E QKQR+C  C  TRTPLWR GPAGPRSLCNACG
Sbjct: 7   NHPDLSGSTFNPSSLMAISNQGLLCTEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACG 66

Query: 76  IRHRKIKMSSGGVNKSRKGKKLGNGGSLKLTVVDFRREIVLHSAGAAMADR-VADGIGED 135
           IR+RK+K ++GGVNKS  GKK+       + VV   REI+LH   AAMA+   A+ IGE+
Sbjct: 67  IRYRKLKNNNGGVNKSGNGKKV-------VRVVGLGREIMLHRTTAAMAENGGAETIGEE 126

Query: 136 EQAAAMLLMALSSGYV 150
           EQAAAMLLMALSSGYV
Sbjct: 127 EQAAAMLLMALSSGYV 135

[Close]

BLAST of MS012131 vs. ExPASy TrEMBL
Match: A0A1S3BSR7 (GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-33
Identity = 92/158 (58.23%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 10  IMASVIDR-PDPSASTFHPSLM-GISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPR 69
           IMA +++R  D S STF+PSLM  +S Q   + E++KQR+CV C ATRTPLWR GPAGPR
Sbjct: 12  IMAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPR 71

Query: 70  SLCNACGIRHRKIKMSS--------------GGVNKSRKGKKLGNGGSLKLTVVDFRREI 129
           SLCNACGIR+RK+KM+S                 NK  KGKK+G GGSLKL VV   REI
Sbjct: 72  SLCNACGIRYRKMKMNSNNDGEVNNNNNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREI 131

Query: 130 VLH-SAGAAMADR-VADGIGEDEQAAAMLLMALSSGYV 150
           ++H     AM D  VA+ IGE+EQ AAMLLMALSSGYV
Sbjct: 132 MVHRRPTTAMEDNGVAESIGEEEQTAAMLLMALSSGYV 169

[Close]

BLAST of MS012131 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-17
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 7   LDPIMASVIDRPDPSASTFHPSLMGISNQSQLKSESQKQRSCVDCHATRTPLWRGGPAGP 66
           LDP    +      S  T   ++   S+ S  ++ S +++SC  C  ++TPLWRGGPAGP
Sbjct: 2   LDPTEKVIDSESMESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGP 61

Query: 67  RSLCNACGIRHRKIKMSSGGVNKSRKGKKLGN-----GGSLKLTVVDFRREIVLHSAGAA 126
           +SLCNACGIR+RK + +        K KK  N     G SLK  +++  RE+++  + A 
Sbjct: 62  KSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKFGDSLKQRLMELGREVMMQRSTAE 121

Query: 127 MADRVADGIGEDEQAAAMLLMALS 146
              R  + +GE+EQ AA+LLMALS
Sbjct: 122 NQRR--NKLGEEEQ-AAVLLMALS 142

[Close]

BLAST of MS012131 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-17
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 40  SESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIKMSSGGVNKSRKGKKLGNG 99
           S + K+++C DC  ++TPLWRGGP GP+SLCNACGIR+RK +   GG   ++K KK  +G
Sbjct: 30  SVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKR--RGGTEDNKKLKKSSSG 89

Query: 100 G-------SLKLTVVDFRREIVLHSAGAAMADRVADGIGEDEQAAAMLLMALSSGYV 150
           G       SLK +++D      L     +  ++    +GE+EQ AA+LLMALS G V
Sbjct: 90  GGNRKFGESLKQSLMD------LGIRKRSTVEKQRQKLGEEEQ-AAVLLMALSYGSV 137

[Close]

BLAST of MS012131 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 37  QLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIKMSS-GGVNKSRKGKK 96
           ++K E    R C +C  T+TP+WRGGP GP+SLCNACGIRHRK + S   G++  R  K 
Sbjct: 17  RMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIHIIRSHKS 76

Query: 97  LGNGGSLKLTVVDFRREIVLHSAGAAMADRVADGIGEDEQAAAMLLM 143
           L +           ++  +L S+   +A +    + E+EQAA  LL+
Sbjct: 77  LAS-----------KKINLLSSSHGGVAVKKRRSLKEEEQAALCLLL 112

[Close]

BLAST of MS012131 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-13
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 40 SESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIKMSSGGVNKSRKGK 95
          S    +R+CVDC   RTPLWRGGPAGP+SLCNACGI+ RK + ++ G+    K K
Sbjct: 36 SSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKK 90

[Close]

BLAST of MS012131 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 34 NQSQLKSESQKQRSCVDCHATRTPLWRGGPAGPRSLCNACGIRHRKIKMSSGGVN----- 93
          N S   S    +++CVDC  +RTPLWRGGPAGP+SLCNACGI+ RK + ++ G+      
Sbjct: 25 NCSSSGSGGDTKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIK 84

Query: 94 -KSRKGKKLG 98
           KS+    LG
Sbjct: 85 IKSKSNNNLG 94

The following BLAST results are available for this feature:

BLAST of MS012131 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152091.1	4.2e-69	98.56	GATA transcription factor 16-like [Momordica charantia]	[more]
XP_023515141.1	2.6e-34	65.44	GATA transcription factor 15-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959984.1	5.7e-34	65.44	GATA transcription factor 15-like [Cucurbita moschata] >KAG6593223.1 GATA transc...	[more]
KAA0046674.1	9.7e-34	59.74	GATA transcription factor 15-like [Cucumis melo var. makuwa] >TYK18209.1 GATA tr...	[more]
XP_023004687.1	1.3e-33	63.97	GATA transcription factor 15-like [Cucurbita maxima]	[more]

BLAST of MS012131 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG10	9.5e-16	39.58	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9FJ10	9.5e-16	44.44	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q8LC59	3.7e-12	39.25	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q9LIB5	6.4e-12	56.36	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q6YW48	2.7e-10	58.33	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]

BLAST of MS012131 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGK8	2.0e-69	98.56	GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111019883...	[more]
A0A6J1H9M3	2.8e-34	65.44	GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111460872 ...	[more]
A0A5A7TUD0	4.7e-34	59.74	GATA transcription factor 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1KR45	6.1e-34	63.97	GATA transcription factor 15-like OS=Cucurbita maxima OX=3661 GN=LOC111497907 PE...	[more]
A0A1S3BSR7	1.4e-33	58.23	GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 S...	[more]

BLAST of MS012131 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06740.1	6.7e-17	39.58	GATA transcription factor 15	[more]
AT5G49300.1	6.7e-17	44.44	GATA transcription factor 16	[more]
AT5G26930.1	2.6e-13	39.25	GATA transcription factor 23	[more]
AT3G16870.1	4.5e-13	56.36	GATA transcription factor 17	[more]
AT4G16141.1	1.3e-12	48.57	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 42..94 e-value: 1.8E-12 score: 57.5
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 48..79 e-value: 1.3E-15 score: 56.6
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 48..73
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 42..78 score: 13.164715
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 47..94 e-value: 9.34577E-14 score: 60.079
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 42..99 e-value: 8.8E-16 score: 59.7
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 33..149
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 41..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012131.1	MS012131.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding