MS011879 (gene) Bitter gourd (TR) v1

Overview


Name	MS011879
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	GB1/RHD3-type G domain-containing protein
Location	scaffold1150: 179848 .. 180001 (-)
RNA-Seq Expression	MS011879
Synteny	MS011879

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGAGAAGAATTTCCTCACTTTGAAGTGTCGCTCATTTGAAGACAAGCTTTATTTGCTTAATAAGAAGTTGGAAGCCCTTTGAGAATTTGAAGTCTGAATATCTGAAGCGATATAATGATGCCATCTATGATAAGAAAAAGCTTGTTGATGAT

mRNA sequence

TCAGAGAAGAATTTCCTCACTTTGAAGTGTCGCTCATTTGAAGACAAGCTTTATTTGCTTAATAAGAAGTTGGAAGCCGAGAATTTGAAGTCTGAATATCTGAAGCGATATAATGATGCCATCTATGATAAGAAAAAGCTTGTTGATGAT

Coding sequence (CDS)

TCAGAGAAGAATTTCCTCACTTTGAAGTGTCGCTCATTTGAAGACAAGCTTTATTTGCTTAATAAGAAGTTGGAAGCCGAGAATTTGAAGTCTGAATATCTGAAGCGATATAATGATGCCATCTATGATAAGAAAAAGCTTGTTGATGAT

Protein sequence

SEKNFLTLKCRSFEDKLYLLNKKLEAENLKSEYLKRYNDAIYDKKKLVDD

Homology

[Close]

BLAST of MS011879 vs. NCBI nr
Match: XP_022142128.1 (guanylate-binding protein 3 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLE-AENLKSEYLKRYNDAIYDKKKLVDD 51
           SEKN L LKCRSFEDKL LLNK+LE +E  KSEYLKRY+DAI DK KL DD
Sbjct: 510 SEKNSLALKCRSFEDKLNLLNKQLEVSEKNKSEYLKRYHDAINDKNKLADD 560

[Close]

BLAST of MS011879 vs. NCBI nr
Match: KZV51114.1 (myosin-10-like [Dorcoceras hygrometricum])

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLEA-ENLKSEYLKRYNDAIYDKKKLVDD 51
           +EK+ LTLKCRS EDK+ LLNK+LEA E  KSEYLKRY DAI DKKKL DD
Sbjct: 544 TEKSSLTLKCRSIEDKMGLLNKQLEASEKYKSEYLKRYEDAINDKKKLTDD 594

[Close]

BLAST of MS011879 vs. NCBI nr
Match: CAA2988164.1 (guanylate-binding 1-like [Olea europaea subsp. europaea])

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLEA-ENLKSEYLKRYNDAIYDKKKLVDD 51
           +EK+ L LKCRS EDK+ LLNK+LEA EN KSEYL RY DAI DKKKL DD
Sbjct: 504 TEKSSLALKCRSIEDKMVLLNKQLEASENYKSEYLNRYEDAIKDKKKLADD 554

[Close]

BLAST of MS011879 vs. NCBI nr
Match: CAA2988166.1 (guanylate-binding 4 [Olea europaea subsp. europaea])

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLEA-ENLKSEYLKRYNDAIYDKKKLVDD 51
           +EK+ L LKCRS EDK+ LLNK+LEA EN KSEYL RY DAI DKKKL DD
Sbjct: 227 TEKSSLALKCRSIEDKMVLLNKQLEASENYKSEYLNRYEDAIKDKKKLADD 277

[Close]

BLAST of MS011879 vs. NCBI nr
Match: XP_022848152.1 (guanylate-binding protein 4 [Olea europaea var. sylvestris])

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLEA-ENLKSEYLKRYNDAIYDKKKLVDD 51
           +EK+ L LKCRS EDK+ LLNK+LEA EN KSEYL RY DAI DKKKL DD
Sbjct: 506 TEKSSLALKCRSIEDKMVLLNKQLEASENYKSEYLNRYEDAIKDKKKLADD 556

[Close]

BLAST of MS011879 vs. ExPASy TrEMBL
Match: A0A6J1CMG8 (guanylate-binding protein 3 OS=Momordica charantia OX=3673 GN=LOC111012329 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLE-AENLKSEYLKRYNDAIYDKKKLVDD 51
           SEKN L LKCRSFEDKL LLNK+LE +E  KSEYLKRY+DAI DK KL DD
Sbjct: 510 SEKNSLALKCRSFEDKLNLLNKQLEVSEKNKSEYLKRYHDAINDKNKLADD 560

[Close]

BLAST of MS011879 vs. ExPASy TrEMBL
Match: A0A2Z7D265 (Myosin-10-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_01906 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-09
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLEA-ENLKSEYLKRYNDAIYDKKKLVDD 51
           +EK+ LTLKCRS EDK+ LLNK+LEA E  KSEYLKRY DAI DKKKL DD
Sbjct: 544 TEKSSLTLKCRSIEDKMGLLNKQLEASEKYKSEYLKRYEDAINDKKKLTDD 594

[Close]

BLAST of MS011879 vs. ExPASy TrEMBL
Match: A0A5B6YQV6 (Putative interferon-induced guanylate-binding protein 2 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_003651 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLEA-ENLKSEYLKRYNDAIYDKKKLVDD 51
           SEK+ L LKCRS EDK+ LLNK+LEA E  KSEYLKRY DAI DKKKL DD
Sbjct: 557 SEKSSLMLKCRSIEDKMGLLNKQLEASEKYKSEYLKRYEDAINDKKKLADD 607

[Close]

BLAST of MS011879 vs. ExPASy TrEMBL
Match: A0A7J7GT00 (GB1/RHD3-type G domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_017897 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLEA-ENLKSEYLKRYNDAIYDKKKLVDD 51
           SEK+ L LKCRS EDK+ LLNK+LEA E  KSEYLKRY DAI DKKKL DD
Sbjct: 504 SEKSSLMLKCRSIEDKMGLLNKQLEASEKYKSEYLKRYEDAINDKKKLADD 554

[Close]

BLAST of MS011879 vs. ExPASy TrEMBL
Match: A0A4S4E9W8 (GB1/RHD3-type G domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_001512 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1   SEKNFLTLKCRSFEDKLYLLNKKLEA-ENLKSEYLKRYNDAIYDKKKLVDD 51
           SEK+ L LKCRS EDK+ LLNK+LEA E  KSEYLKRY DAI DKKKL DD
Sbjct: 550 SEKSSLMLKCRSIEDKMGLLNKQLEASEKYKSEYLKRYEDAINDKKKLADD 600

[Close]

BLAST of MS011879 vs. TAIR 10
Match: AT5G46070.1 (Guanylate-binding family protein )

HSP 1 Score: 40.4 bits (93), Expect = 4.9e-04
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 2   EKNFLTLKCRSFEDKLYLLNKKL-EAENLKSEYLKRYNDAIYDKKKLVD 50
           EKN L +K RS ED +  L ++L ++E  K EY KRY+++  DKKKL D
Sbjct: 511 EKNSLAMKFRSVEDAMKHLKQQLDDSERYKLEYQKRYDESNNDKKKLED 559

The following BLAST results are available for this feature:

BLAST of MS011879 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142128.1	4.7e-09	76.47	guanylate-binding protein 3 [Momordica charantia]	[more]
KZV51114.1	1.1e-08	74.51	myosin-10-like [Dorcoceras hygrometricum]	[more]
CAA2988164.1	1.8e-08	72.55	guanylate-binding 1-like [Olea europaea subsp. europaea]	[more]
CAA2988166.1	1.8e-08	72.55	guanylate-binding 4 [Olea europaea subsp. europaea]	[more]
XP_022848152.1	1.8e-08	72.55	guanylate-binding protein 4 [Olea europaea var. sylvestris]	[more]

BLAST of MS011879 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011879 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CMG8	2.3e-09	76.47	guanylate-binding protein 3 OS=Momordica charantia OX=3673 GN=LOC111012329 PE=3 ...	[more]
A0A2Z7D265	5.1e-09	74.51	Myosin-10-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_01906 PE=3 SV=1	[more]
A0A5B6YQV6	1.1e-08	74.51	Putative interferon-induced guanylate-binding protein 2 (Fragment) OS=Davidia in...	[more]
A0A7J7GT00	1.1e-08	74.51	GB1/RHD3-type G domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_...	[more]
A0A4S4E9W8	1.1e-08	74.51	GB1/RHD3-type G domain-containing protein OS=Camellia sinensis var. sinensis OX=...	[more]

BLAST of MS011879 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46070.1	4.9e-04	48.98	Guanylate-binding family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011879.1	MS011879.1	mRNA