MS011805 (gene) Bitter gourd (TR) v1

Overview


Name	MS011805
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Peroxiredoxins prx-1 prx-2 prx-3
Location	scaffold11: 852412 .. 852657 (-)
RNA-Seq Expression	MS011805
Synteny	MS011805

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTGAGGGCAGCCTTAGCGTTGCAGTTTCCACGTCTCCGAAACATGGCAATAGAGATGCTGAGACTGTGAGGTCCAGTTCACCGAAAGGGCAGTGCTTGTGCTCACCCACGATGCATCAAGGCTCGTTTAGGTGTCGGCTTCATCGTTCAACGTCTTCAGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAACCCTGTGGCTGCTCTTTCTCCCAAAAAATCTCTTGAATCTTCC

mRNA sequence

ATGGCCTCTGAGGGCAGCCTTAGCGTTGCAGTTTCCACGTCTCCGAAACATGGCAATAGAGATGCTGAGACTGTGAGGTCCAGTTCACCGAAAGGGCAGTGCTTGTGCTCACCCACGATGCATCAAGGCTCGTTTAGGTGTCGGCTTCATCGTTCAACGTCTTCAGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAACCCTGTGGCTGCTCTTTCTCCCAAAAAATCTCTTGAATCTTCC

Coding sequence (CDS)

ATGGCCTCTGAGGGCAGCCTTAGCGTTGCAGTTTCCACGTCTCCGAAACATGGCAATAGAGATGCTGAGACTGTGAGGTCCAGTTCACCGAAAGGGCAGTGCTTGTGCTCACCCACGATGCATCAAGGCTCGTTTAGGTGTCGGCTTCATCGTTCAACGTCTTCAGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAACCCTGTGGCTGCTCTTTCTCCCAAAAAATCTCTTGAATCTTCC

Protein sequence

MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPANNPVAALSPKKSLESS

Homology

[Close]

BLAST of MS011805 vs. NCBI nr
Match: KGN60621.1 (hypothetical protein Csa_019426 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 7.7e-33
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSLSV+VSTSPKH NRDAETVRS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANNPVAALSPKKSLESS 83
          SKSMP NNPVA+LSPK+SLESS
Sbjct: 61 SKSMPTNNPVASLSPKESLESS 82

[Close]

BLAST of MS011805 vs. NCBI nr
Match: KAA0061558.1 (hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSL V+VSTSPKH NRDAET+RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANNPVAALSPKKSLESS 83
          SKSMPANNPVA+LSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of MS011805 vs. NCBI nr
Match: KAG7030425.1 (hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-31
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1   MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MAS+GSLSV VSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 55  MASDGSLSVVVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 114

Query: 61  SKSMPANNPVAALSPKKSLESS 83
           SKSMPA++PVA+LS K+SL SS
Sbjct: 115 SKSMPADHPVASLSSKESLGSS 136

[Close]

BLAST of MS011805 vs. NCBI nr
Match: TYK10714.1 (hypothetical protein E5676_scaffold332G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.2e-31
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSL V+VS+SPKH NRDAET+RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSSSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANNPVAALSPKKSLESS 83
          SKSMPANNPVA+LSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of MS011805 vs. NCBI nr
Match: XP_022946647.1 (uncharacterized protein LOC111450652 [Cucurbita moschata] >XP_022946648.1 uncharacterized protein LOC111450652 [Cucurbita moschata] >XP_022946649.1 uncharacterized protein LOC111450652 [Cucurbita moschata])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MAS+GSLSV VSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRS SSAWMKR
Sbjct: 43  MASDGSLSVVVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSMSSAWMKR 102

Query: 61  SKSMPANNPVAALSPKKSLESS 83
           SKSMPA++PVA+LS K+SL SS
Sbjct: 103 SKSMPADHPVASLSSKESLGSS 124

[Close]

BLAST of MS011805 vs. ExPASy TrEMBL
Match: A0A0A0LKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.7e-33
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSLSV+VSTSPKH NRDAETVRS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANNPVAALSPKKSLESS 83
          SKSMP NNPVA+LSPK+SLESS
Sbjct: 61 SKSMPTNNPVASLSPKESLESS 82

[Close]

BLAST of MS011805 vs. ExPASy TrEMBL
Match: A0A5A7V1X5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001200 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.4e-32
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSL V+VSTSPKH NRDAET+RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANNPVAALSPKKSLESS 83
          SKSMPANNPVA+LSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of MS011805 vs. ExPASy TrEMBL
Match: A0A5D3CHP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00230 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSL V+VS+SPKH NRDAET+RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSSSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANNPVAALSPKKSLESS 83
          SKSMPANNPVA+LSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of MS011805 vs. ExPASy TrEMBL
Match: A0A6J1G498 (uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC111450652 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.0e-31
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MAS+GSLSV VSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRS SSAWMKR
Sbjct: 43  MASDGSLSVVVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSMSSAWMKR 102

Query: 61  SKSMPANNPVAALSPKKSLESS 83
           SKSMPA++PVA+LS K+SL SS
Sbjct: 103 SKSMPADHPVASLSSKESLGSS 124

[Close]

BLAST of MS011805 vs. ExPASy TrEMBL
Match: A0A6A1UK22 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006893 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.2e-19
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1  MASEGSLSVAVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS GS  ++VST+PK G  +A T  S SPKGQCLCSPT H+GSFRCRLHRS SSAWMKR
Sbjct: 1  MASRGS-QLSVSTTPKSGKGEAVTGASDSPKGQCLCSPTTHKGSFRCRLHRS-SSAWMKR 60

Query: 61 SKSMPANNPVAALSPKKSLESS 83
          SKSMPA++ VAALSP KS+ESS
Sbjct: 61 SKSMPASSSVAALSP-KSVESS 79

[Close]

BLAST of MS011805 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 26 RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPAN 68
          +SSS +  CLC+PT H GSFRCR HR  +   M R  S+P+N
Sbjct: 57 KSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSN 98

[Close]

BLAST of MS011805 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-05
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 26 RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPANNPVAALSPKKSLES 82
          ++S  K  CLCSPT H GSFRCR+HRS S   ++R+KS+ A + +   SP K  +S
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSIEAASLLD--SPPKPADS 86

[Close]

BLAST of MS011805 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-05
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 26 RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPANNPVAALSPKKSLES 82
          ++S  K  CLCSPT H GSFRCR+HRS S   ++R+KS+ A + +   SP K  +S
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSIEAASLLD--SPPKPADS 86

[Close]

BLAST of MS011805 vs. TAIR 10
Match: AT3G56500.1 (serine-rich protein-related )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 31 KGQCLCSPTMHQGSFRCRLHRSTSSA 57
          K  C+C+PT H+GSFRCRLHRS++++
Sbjct: 62 KTVCICAPTKHEGSFRCRLHRSSATS 87

[Close]

BLAST of MS011805 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 26 RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPAN 68
          ++S  K  C+CSPT H GSF+C+LHR+ S   ++R+KS+  N
Sbjct: 24 QTSITKTICICSPTTHPGSFKCKLHRTPS---LQRNKSVETN 62

The following BLAST results are available for this feature:

BLAST of MS011805 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60621.1	7.7e-33	91.46	hypothetical protein Csa_019426 [Cucumis sativus]	[more]
KAA0061558.1	1.1e-31	90.24	hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa]	[more]
KAG7030425.1	2.5e-31	90.24	hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
TYK10714.1	3.2e-31	89.02	hypothetical protein E5676_scaffold332G00230 [Cucumis melo var. makuwa]	[more]
XP_022946647.1	1.2e-30	89.02	uncharacterized protein LOC111450652 [Cucurbita moschata] >XP_022946648.1 unchar...	[more]

BLAST of MS011805 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011805 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKU3	3.7e-33	91.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1	[more]
A0A5A7V1X5	5.4e-32	90.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CHP3	1.6e-31	89.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1G498	6.0e-31	89.02	uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]
A0A6A1UK22	5.2e-19	73.17	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006893 PE=4 SV=1	[more]

BLAST of MS011805 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13227.1	1.3e-06	52.38	serine-rich protein-related	[more]
AT1G67910.1	4.2e-05	48.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	4.2e-05	48.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G56500.1	1.2e-04	61.54	serine-rich protein-related	[more]
AT1G24577.1	2.8e-04	47.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..82
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR33132:SF37	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011805.1	MS011805.1	mRNA