MS011804 (gene) Bitter gourd (TR) v1

Overview


Name	MS011804
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	arabinogalactan protein 22
Location	scaffold11: 848619 .. 848922 (-)
RNA-Seq Expression	MS011804
Synteny	MS011804

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGATGAAGCTATTCGCCGTTCCGATCGCCGGATTACTCATGTTCTTGACTCTTCTGCAACTAGCCTACGGGCACTCGCACGATATTTCGCCGGCGCCGGCGGGTCCTTCGAACGACGGTGAGTAATTTCCGACGGTCTCTGTCGTTGATTTTTCTTTGTTGCTGAGTTTGATCGGCGAAGAACAGAAACCCTAATTCTTGCGTTGTTTTTGTTGTTGTTGTTGCAGGCGCTGCAATTGACCAAGGGATTGCTTACGTTCTTCTTCTGGTGGCCCTCGCCGTTACTTACATCGTCCAT

mRNA sequence

ATGAGTTCGATGAAGCTATTCGCCGTTCCGATCGCCGGATTACTCATGTTCTTGACTCTTCTGCAACTAGCCTACGGGCACTCGCACGATATTTCGCCGGCGCCGGCGGGTCCTTCGAACGACGGCGCTGCAATTGACCAAGGGATTGCTTACGTTCTTCTTCTGGTGGCCCTCGCCGTTACTTACATCGTCCAT

Coding sequence (CDS)

ATGAGTTCGATGAAGCTATTCGCCGTTCCGATCGCCGGATTACTCATGTTCTTGACTCTTCTGCAACTAGCCTACGGGCACTCGCACGATATTTCGCCGGCGCCGGCGGGTCCTTCGAACGACGGCGCTGCAATTGACCAAGGGATTGCTTACGTTCTTCTTCTGGTGGCCCTCGCCGTTACTTACATCGTCCAT

Protein sequence

MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Homology

[Close]

BLAST of MS011804 vs. NCBI nr
Match: KGN60622.1 (hypothetical protein Csa_019490 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-17
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          MSS+KL AVPI G L FL +LQLA+GHSHDISPA AGPSNDGAAIDQGIAYVLLL+ALAV
Sbjct: 1  MSSLKLTAVPIVGFL-FLIVLQLAHGHSHDISPA-AGPSNDGAAIDQGIAYVLLLLALAV 60

Query: 61 TYIVH 66
          TYIVH
Sbjct: 61 TYIVH 63

[Close]

BLAST of MS011804 vs. NCBI nr
Match: KAA0061559.1 (putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 8.9e-16
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          MSS+KL AVP  G L FL +LQLA+GHSHDISPA  GPSNDGAAIDQGIAYVLLL+ALA+
Sbjct: 1  MSSLKLTAVPFVGFL-FLIILQLAHGHSHDISPA-EGPSNDGAAIDQGIAYVLLLLALAI 60

Query: 61 TYIVH 66
          TYI+H
Sbjct: 61 TYIIH 63

[Close]

BLAST of MS011804 vs. NCBI nr
Match: OAY53733.1 (hypothetical protein MANES_03G019400v8 [Manihot esculenta])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          MS MKLF +PI G L+FL L+QL+YG     SPAP GPS+DG AIDQGIA++L+LVALAV
Sbjct: 1  MSPMKLFGLPIIG-LVFLALMQLSYGQGVAPSPAPEGPSSDGNAIDQGIAFILMLVALAV 60

Query: 61 TYIVH 66
          TY++H
Sbjct: 61 TYLIH 64

[Close]

BLAST of MS011804 vs. NCBI nr
Match: KAF9662510.1 (hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          M+SM+L+A+PI G  MFL LL+  +G     SPAP GPSNDG  IDQGIAYVLL++ALA+
Sbjct: 1  MNSMRLYALPIIG-FMFLALLEFGFGQGMASSPAPEGPSNDGKTIDQGIAYVLLMLALAI 60

Query: 61 TYIVH 66
          TY++H
Sbjct: 61 TYLLH 64

[Close]

BLAST of MS011804 vs. NCBI nr
Match: KAF8034376.1 (hypothetical protein BT93_C0621 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1   MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
           M++M+   VP+    MFLTLLQL+YG S   SPAP GPSNDG AIDQGIAYVLL  ALA+
Sbjct: 60  MNAMRSCFVPVIVGFMFLTLLQLSYGQSVAPSPAPEGPSNDGKAIDQGIAYVLLFAALAI 119

Query: 61  TYIVH 66
           TY+ H
Sbjct: 120 TYLFH 124

[Close]

BLAST of MS011804 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.3e-09
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          M+S+K F + I  + + ++++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA+
Sbjct: 1  MASLK-FPLEILAVFVIISVILLPIAQSHSSSPAPA-PTSDGTSIDQGIAYVLMMVALAL 60

Query: 61 TYIVH 66
          TY +H
Sbjct: 61 TYFIH 63

[Close]

BLAST of MS011804 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.8e-07
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1  MSSMKL-FAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALA 60
          MS  +L F V     ++F  LL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL 
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMA--HAQSAAPAPA-PTSDGTTIDQGIAYVLMLVALV 60

Query: 61 VTYIVH 66
          +TY++H
Sbjct: 61 LTYLIH 63

[Close]

BLAST of MS011804 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 14 LLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH 66
          L  F+  + L+   +  ++PAPA P++DG +IDQGIAY+L++VAL +TY++H
Sbjct: 12 LFSFVFAVILSLAGAQSLAPAPA-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of MS011804 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 23/58 (39.66%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8  AVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH 66
          +V +  L  F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL +TY++H
Sbjct: 6  SVAVIALFAFVFAVISPFAGAQSLAPAPS-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of MS011804 vs. ExPASy TrEMBL
Match: A0A0A0LIU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-17
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          MSS+KL AVPI G L FL +LQLA+GHSHDISPA AGPSNDGAAIDQGIAYVLLL+ALAV
Sbjct: 1  MSSLKLTAVPIVGFL-FLIVLQLAHGHSHDISPA-AGPSNDGAAIDQGIAYVLLLLALAV 60

Query: 61 TYIVH 66
          TYIVH
Sbjct: 61 TYIVH 63

[Close]

BLAST of MS011804 vs. ExPASy TrEMBL
Match: A0A5A7V7C0 (Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00220 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.3e-16
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          MSS+KL AVP  G L FL +LQLA+GHSHDISPA  GPSNDGAAIDQGIAYVLLL+ALA+
Sbjct: 1  MSSLKLTAVPFVGFL-FLIILQLAHGHSHDISPA-EGPSNDGAAIDQGIAYVLLLLALAI 60

Query: 61 TYIVH 66
          TYI+H
Sbjct: 61 TYIIH 63

[Close]

BLAST of MS011804 vs. ExPASy TrEMBL
Match: A0A2C9W3S5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.6e-13
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          MS MKLF +PI G L+FL L+QL+YG     SPAP GPS+DG AIDQGIA++L+LVALAV
Sbjct: 1  MSPMKLFGLPIIG-LVFLALMQLSYGQGVAPSPAPEGPSSDGNAIDQGIAFILMLVALAV 60

Query: 61 TYIVH 66
          TY++H
Sbjct: 61 TYLIH 64

[Close]

BLAST of MS011804 vs. ExPASy TrEMBL
Match: A0A059CP27 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01051 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1   MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
           M++++   +P+    MFLTLLQL YG S   SPAP GPSNDG AIDQGIAY LLLVALAV
Sbjct: 82  MNAVRSCFIPVIVGFMFLTLLQLGYGQSMVPSPAPEGPSNDGMAIDQGIAYTLLLVALAV 141

Query: 61  TYIVH 66
           TY+ H
Sbjct: 142 TYLFH 146

[Close]

BLAST of MS011804 vs. ExPASy TrEMBL
Match: A0A2C9UBX1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G116900 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          MS MKL+A   AG ++F  LLQL YG     SPAP GP++DG +IDQGIAY+LLLVALA+
Sbjct: 1  MSPMKLYAAEFAGFMLF-ALLQLGYGQGLAPSPAPQGPTSDGKSIDQGIAYILLLVALAI 60

Query: 61 TYIVH 66
          TY+ H
Sbjct: 61 TYLFH 64

[Close]

BLAST of MS011804 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 60.5 bits (145), Expect = 5.9e-10
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1  MSSMKLFAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAV 60
          M+S+K F + I  + + ++++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA+
Sbjct: 1  MASLK-FPLEILAVFVIISVILLPIAQSHSSSPAPA-PTSDGTSIDQGIAYVLMMVALAL 60

Query: 61 TYIVH 66
          TY +H
Sbjct: 61 TYFIH 63

[Close]

BLAST of MS011804 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-08
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1  MSSMKL-FAVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALA 60
          MS  +L F V     ++F  LL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL 
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMA--HAQSAAPAPA-PTSDGTTIDQGIAYVLMLVALV 60

Query: 61 VTYIVH 66
          +TY++H
Sbjct: 61 LTYLIH 63

[Close]

BLAST of MS011804 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 14 LLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH 66
          L  F+  + L+   +  ++PAPA P++DG +IDQGIAY+L++VAL +TY++H
Sbjct: 12 LFSFVFAVILSLAGAQSLAPAPA-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of MS011804 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 23/58 (39.66%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8  AVPIAGLLMFLTLLQLAYGHSHDISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH 66
          +V +  L  F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL +TY++H
Sbjct: 6  SVAVIALFAFVFAVISPFAGAQSLAPAPS-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of MS011804 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60622.1	6.1e-17	84.62	hypothetical protein Csa_019490 [Cucumis sativus]	[more]
KAA0061559.1	8.9e-16	78.46	putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putat...	[more]
OAY53733.1	1.6e-12	66.15	hypothetical protein MANES_03G019400v8 [Manihot esculenta]	[more]
KAF9662510.1	1.0e-11	61.54	hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]	[more]
KAF8034376.1	1.7e-11	64.62	hypothetical protein BT93_C0621 [Corymbia citriodora subsp. variegata]	[more]

BLAST of MS011804 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK16	8.3e-09	49.23	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
Q8L9T8	7.8e-07	50.00	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
O82337	1.9e-05	46.15	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	1.9e-05	39.66	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of MS011804 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIU0	3.0e-17	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1	[more]
A0A5A7V7C0	4.3e-16	78.46	Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A2C9W3S5	7.6e-13	66.15	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=...	[more]
A0A059CP27	1.1e-11	64.62	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01051 PE=4 SV...	[more]
A0A2C9UBX1	5.4e-11	61.54	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G116900 PE=4 SV=...	[more]

BLAST of MS011804 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53250.1	5.9e-10	49.23	arabinogalactan protein 22	[more]
AT5G24105.1	5.5e-08	50.00	arabinogalactan protein 41	[more]
AT2G46330.1	1.4e-06	46.15	arabinogalactan protein 16	[more]
AT3G61640.1	1.4e-06	39.66	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 32..65 e-value: 7.7E-18 score: 64.1
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 2..65
None	No IPR available	PANTHER	PTHR33374:SF7	ARABINOGALACTAN PEPTIDE 22	coord: 2..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011804.1	MS011804.1	mRNA