MS011789 (gene) Bitter gourd (TR) v1

Overview
NameMS011789
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSmall polypeptide DEVIL 10
Locationscaffold11: 742007 .. 742189 (-)
RNA-Seq ExpressionMS011789
SyntenyMS011789
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCCGCCCTAATGCCCGCCGCTCACTCTTCTCAGTCAGCGCAACTCCGCCTCAGAACTCGCCGGAAAATCAGTTTTCGGAAGCGGTGCTTGCGGATGATCAAGCAGCAGAAAACCAGATTCTACATCCTCGGACGTTGCATCTCCATGCTCCTCTGCTGGCACGACCACGATATCACCGAT

mRNA sequence

GTCTCCGCCCTAATGCCCGCCGCTCACTCTTCTCAGTCAGCGCAACTCCGCCTCAGAACTCGCCGGAAAATCAGTTTTCGGAAGCGGTGCTTGCGGATGATCAAGCAGCAGAAAACCAGATTCTACATCCTCGGACGTTGCATCTCCATGCTCCTCTGCTGGCACGACCACGATATCACCGAT

Coding sequence (CDS)

GTCTCCGCCCTAATGCCCGCCGCTCACTCTTCTCAGTCAGCGCAACTCCGCCTCAGAACTCGCCGGAAAATCAGTTTTCGGAAGCGGTGCTTGCGGATGATCAAGCAGCAGAAAACCAGATTCTACATCCTCGGACGTTGCATCTCCATGCTCCTCTGCTGGCACGACCACGATATCACCGAT

Protein sequence

VSALMPAAHSSQSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD
Homology
BLAST of MS011789 vs. NCBI nr
Match: KGN60637.1 (hypothetical protein Csa_019376 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 8.0e-19
Identity = 50/61 (81.97%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 1  VSALMPAAHSSQSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDIT 60
          +S     AHSSQS QLR+R RRK SFRKRC RMIKQQKTRFYILGRCISMLLCWHDHDIT
Sbjct: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60

Query: 61 D 62
          D
Sbjct: 61 D 61

BLAST of MS011789 vs. NCBI nr
Match: KAG6586417.1 (hypothetical protein SDJN03_19150, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 3.4e-17
Identity = 52/61 (85.25%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 1  VSALMPAAHSSQSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDIT 60
          V  LM  A SSQSAQLRLRT RKISFRKRCLRMIKQQKTRFYILGRCISMLLCW D DI 
Sbjct: 33 VFPLMSTALSSQSAQLRLRTCRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWQDRDIH 92

Query: 61 D 62
          D
Sbjct: 93 D 93

BLAST of MS011789 vs. NCBI nr
Match: KAG7030417.1 (hypothetical protein SDJN02_08764, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.7 bits (221), Expect = 9.2e-15
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  VSALMP----AAHSSQSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHD 60
          VSALMP    AAH+SQS QL L  RR+ SFRKRCL MIKQQKTRFYIL RCISML+CW+D
Sbjct: 25 VSALMPSAYSAAHASQSTQLCLGNRRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWND 84

Query: 61 HDITD 62
           DI D
Sbjct: 85 RDIPD 89

BLAST of MS011789 vs. NCBI nr
Match: XP_042976770.1 (small polypeptide DEVIL 10 [Carya illinoinensis] >KAG2713199.1 hypothetical protein I3760_04G165100 [Carya illinoinensis] >KAG6658515.1 hypothetical protein CIPAW_04G167100 [Carya illinoinensis] >KAG6718716.1 hypothetical protein I3842_04G166200 [Carya illinoinensis] >KAG7984358.1 hypothetical protein I3843_04G156200 [Carya illinoinensis])

HSP 1 Score: 80.5 bits (197), Expect = 5.6e-12
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 14 AQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          +Q R RTRRK  FRKRCL M KQQKTRFYILGRCISMLLCWHDH I D
Sbjct: 10 SQPRRRTRRKTGFRKRCLLMAKQQKTRFYILGRCISMLLCWHDHAIPD 57

BLAST of MS011789 vs. NCBI nr
Match: RXI05912.1 (hypothetical protein DVH24_017954 [Malus domestica])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 17  RLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
           R ++ RKI+FRKRCL M KQQKTRFYILGRC+SMLLCWHDH I+D
Sbjct: 65  RRKSHRKIAFRKRCLMMAKQQKTRFYILGRCVSMLLCWHDHSISD 109

BLAST of MS011789 vs. ExPASy Swiss-Prot
Match: Q6IM91 (Small polypeptide DEVIL 10 OS=Arabidopsis thaliana OX=3702 GN=DVL10 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-09
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 13 SAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          ++ L  +  RK  F  RCL M KQQ+TR YIL RC+SMLLCWHDH I+D
Sbjct: 7  NSSLPTKPNRKTRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 55

BLAST of MS011789 vs. ExPASy Swiss-Prot
Match: Q6IM93 (Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 18/36 (50.00%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 23 KISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHD 59
          K  F ++C R++K+Q+ RFYI+ RC+ ML+CW DH+
Sbjct: 37 KYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHN 72

BLAST of MS011789 vs. ExPASy Swiss-Prot
Match: Q7XXN8 (Small polypeptide DEVIL 16 OS=Arabidopsis thaliana OX=3702 GN=DVL16 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-05
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 25 SFRKRCLRMIKQQKTRFYILGRCISMLLCWHD--HDITD 62
          +F ++C  ++K+Q+ +FYIL RCI+ML+CWHD  HD  D
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHDQNHDRKD 52

BLAST of MS011789 vs. ExPASy Swiss-Prot
Match: Q8S8S3 (Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.3e-05
Identity = 18/48 (37.50%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 10 SSQSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDH 58
          S+ S+    + + + +F ++C R++K+Q+ RFYI+ RC+ ML+CW D+
Sbjct: 36 STSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDN 83

BLAST of MS011789 vs. ExPASy Swiss-Prot
Match: Q6IM86 (Small polypeptide DEVIL 15 OS=Arabidopsis thaliana OX=3702 GN=DVL15 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-04
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 10  SSQSAQL-RLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDH 58
           SS+S+ L R+ +++  S   +C ++ K+ K+RFYI+ RC+ ML+CWH H
Sbjct: 95  SSKSSSLSRILSKKGASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

BLAST of MS011789 vs. ExPASy TrEMBL
Match: A0A0A0LIV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005340 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-19
Identity = 50/61 (81.97%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 1  VSALMPAAHSSQSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDIT 60
          +S     AHSSQS QLR+R RRK SFRKRC RMIKQQKTRFYILGRCISMLLCWHDHDIT
Sbjct: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60

Query: 61 D 62
          D
Sbjct: 61 D 61

BLAST of MS011789 vs. ExPASy TrEMBL
Match: A0A498KJW8 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017954 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.9e-12
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 17  RLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
           R ++ RKI+FRKRCL M KQQKTRFYILGRC+SMLLCWHDH I+D
Sbjct: 65  RRKSHRKIAFRKRCLMMAKQQKTRFYILGRCVSMLLCWHDHSISD 109

BLAST of MS011789 vs. ExPASy TrEMBL
Match: A0A7J6F8M0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_006385 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 10 SSQSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          SS S+  R ++ RK   RKRCL M+KQQKTRFYILGRC+SMLLCWHDH I+D
Sbjct: 8  SSASSGTRRKSSRKTGLRKRCLLMVKQQKTRFYILGRCVSMLLCWHDHSISD 59

BLAST of MS011789 vs. ExPASy TrEMBL
Match: A0A2P6RJL2 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0091061 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.0e-11
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 12 QSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          +S Q R ++ RKI FRKRC+ M K QKTRFYILGRC+SMLLCWHDH I+D
Sbjct: 11 RSHQSRPKSHRKIGFRKRCVMMAKHQKTRFYILGRCVSMLLCWHDHSISD 60

BLAST of MS011789 vs. ExPASy TrEMBL
Match: A0A6P5S1D1 (uncharacterized protein LOC110751101 OS=Prunus avium OX=42229 GN=LOC110751101 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.1e-11
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 15 QLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          ++R ++ RK+ FRKRCL M K QKTRFYILGRC+SMLLCWHDH I+D
Sbjct: 14 RVRRKSHRKMGFRKRCLMMAKHQKTRFYILGRCVSMLLCWHDHSISD 60

BLAST of MS011789 vs. TAIR 10
Match: AT4G13395.1 (ROTUNDIFOLIA like 12 )

HSP 1 Score: 63.2 bits (152), Expect = 8.6e-11
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 13 SAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          ++ L  +  RK  F  RCL M KQQ+TR YIL RC+SMLLCWHDH I+D
Sbjct: 7  NSSLPTKPNRKTRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 55

BLAST of MS011789 vs. TAIR 10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7 )

HSP 1 Score: 50.1 bits (118), Expect = 7.5e-07
Identity = 18/36 (50.00%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 23 KISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDHD 59
          K  F ++C R++K+Q+ RFYI+ RC+ ML+CW DH+
Sbjct: 37 KYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHN 72

BLAST of MS011789 vs. TAIR 10
Match: AT2G36985.1 (DVL family protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-06
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 25 SFRKRCLRMIKQQKTRFYILGRCISMLLCWHD--HDITD 62
          +F ++C  ++K+Q+ +FYIL RCI+ML+CWHD  HD  D
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHDQNHDRKD 52

BLAST of MS011789 vs. TAIR 10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8 )

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 18/48 (37.50%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 10 SSQSAQLRLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDH 58
          S+ S+    + + + +F ++C R++K+Q+ RFYI+ RC+ ML+CW D+
Sbjct: 36 STSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDN 83

BLAST of MS011789 vs. TAIR 10
Match: AT3G46613.1 (ROTUNDIFOLIA like 4 )

HSP 1 Score: 46.6 bits (109), Expect = 8.3e-06
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 10  SSQSAQL-RLRTRRKISFRKRCLRMIKQQKTRFYILGRCISMLLCWHDH 58
           SS+S+ L R+ +++  S   +C ++ K+ K+RFYI+ RC+ ML+CWH H
Sbjct: 95  SSKSSSLSRILSKKGASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60637.18.0e-1981.97hypothetical protein Csa_019376 [Cucumis sativus][more]
KAG6586417.13.4e-1785.25hypothetical protein SDJN03_19150, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030417.19.2e-1573.85hypothetical protein SDJN02_08764, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_042976770.15.6e-1281.25small polypeptide DEVIL 10 [Carya illinoinensis] >KAG2713199.1 hypothetical prot... [more]
RXI05912.11.6e-1177.78hypothetical protein DVH24_017954 [Malus domestica][more]
Match NameE-valueIdentityDescription
Q6IM911.2e-0959.18Small polypeptide DEVIL 10 OS=Arabidopsis thaliana OX=3702 GN=DVL10 PE=3 SV=1[more]
Q6IM931.1e-0550.00Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1[more]
Q7XXN82.4e-0551.28Small polypeptide DEVIL 16 OS=Arabidopsis thaliana OX=3702 GN=DVL16 PE=2 SV=1[more]
Q8S8S35.3e-0537.50Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1[more]
Q6IM861.2e-0442.86Small polypeptide DEVIL 15 OS=Arabidopsis thaliana OX=3702 GN=DVL15 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LIV13.9e-1981.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005340 PE=4 SV=1[more]
A0A498KJW87.9e-1277.78Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017954 PE=4 SV=1[more]
A0A7J6F8M01.7e-1169.23Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_006385 PE=4 SV=1[more]
A0A2P6RJL23.0e-1170.00Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0091061 PE=4... [more]
A0A6P5S1D15.1e-1170.21uncharacterized protein LOC110751101 OS=Prunus avium OX=42229 GN=LOC110751101 PE... [more]
Match NameE-valueIdentityDescription
AT4G13395.18.6e-1159.18ROTUNDIFOLIA like 12 [more]
AT3G55515.17.5e-0750.00ROTUNDIFOLIA like 7 [more]
AT2G36985.11.7e-0651.28DVL family protein [more]
AT2G39705.13.7e-0637.50ROTUNDIFOLIA like 8 [more]
AT3G46613.18.3e-0642.86ROTUNDIFOLIA like 4 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 35..53
e-value: 1.1E-11
score: 44.2
NoneNo IPR availablePANTHERPTHR33102:SF57DVL10coord: 5..60
NoneNo IPR availablePANTHERPTHR33102DVL19-RELATED-RELATEDcoord: 5..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS011789.1MS011789.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008285 negative regulation of cell population proliferation