MS011772 (gene) Bitter gourd (TR) v1

Overview


Name	MS011772
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	scaffold11: 573443 .. 574030 (+)
RNA-Seq Expression	MS011772
Synteny	MS011772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGGAGGCGACTGGATGTGCGGCGTGTGCGAGCACGTGAACTTCAAGAAGAGAGAAGCCTGCCAAAGATGTGGGTACCCAAAATATGGTGGCCCTGATCCCACAACATATGAATACCATAAAACAGATCATCATCAAGCTCTCTTGGCTGGAGATTGGTACTGCAACTGTGGAGCTCACAACTATGCCAGCAGATCAAACTGCTACAGATGCAATAGTAATGCGTTTAAGAATGTGGATAATATTGGTGCCTTGCCTGGATGGAAATCTGGGGATTGGATTTGCACTAGGTTAGTACCGTCTCGTCTTCATTTTGTGATCGATTCTGTTAAGCTATCTAGAAAATATTATGATTTAACATGACGTTAGAATGGGAGATTTCTCTCCATGAAATTTTATTTTCTCTACATTTCCAATAATTTTATAGTTTCTTTAACGAAAAATAGTTGTTTTTTATTTCCCATATATATTGAGATGGGAAATATGTTGAATTTGGGCAGAATAGGATGCGAAATGCACAATTATGCGAGTAGGATGGAATGCTACAAATGCAACACTCCGAGGGATTTTGGTAAGAAGAATTATTTT

mRNA sequence

TCGGGAGGCGACTGGATGTGCGGCGTGTGCGAGCACGTGAACTTCAAGAAGAGAGAAGCCTGCCAAAGATGTGGGTACCCAAAATATGGTGGCCCTGATCCCACAACATATGAATACCATAAAACAGATCATCATCAAGCTCTCTTGGCTGGAGATTGGTACTGCAACTGTGGAGCTCACAACTATGCCAGCAGATCAAACTGCTACAGATGCAATAGTAATGCGTTTAAGAATGTGGATAATATTGGTGCCTTGCCTGGATGGAAATCTGGGGATTGGATTTGCACTAGAATAGGATGCGAAATGCACAATTATGCGAGTAGGATGGAATGCTACAAATGCAACACTCCGAGGGATTTTGGTAAGAAGAATTATTTT

Coding sequence (CDS)

TCGGGAGGCGACTGGATGTGCGGCGTGTGCGAGCACGTGAACTTCAAGAAGAGAGAAGCCTGCCAAAGATGTGGGTACCCAAAATATGGTGGCCCTGATCCCACAACATATGAATACCATAAAACAGATCATCATCAAGCTCTCTTGGCTGGAGATTGGTACTGCAACTGTGGAGCTCACAACTATGCCAGCAGATCAAACTGCTACAGATGCAATAGTAATGCGTTTAAGAATGTGGATAATATTGGTGCCTTGCCTGGATGGAAATCTGGGGATTGGATTTGCACTAGAATAGGATGCGAAATGCACAATTATGCGAGTAGGATGGAATGCTACAAATGCAACACTCCGAGGGATTTTGGTAAGAAGAATTATTTT

Protein sequence

SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDFGKKNYF

Homology

[Close]

BLAST of MS011772 vs. NCBI nr
Match: XP_022143171.1 (uncharacterized RNA-binding protein C17H9.04c-like [Momordica charantia])

HSP 1 Score: 280.8 bits (717), Expect = 5.8e-72
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAH 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTD HQALLAGDWYCNCGAH
Sbjct: 8   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTD-HQALLAGDWYCNCGAH 67

Query: 61  NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF 120
           NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF
Sbjct: 68  NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF 127

Query: 121 G 122
           G
Sbjct: 128 G 127

[Close]

BLAST of MS011772 vs. NCBI nr
Match: XP_008457786.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_008457794.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 6.7e-60
Identity = 102/124 (82.26%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNC 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+ +   H ++   +LAGDWYCNC
Sbjct: 6   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGDWYCNC 65

Query: 61  GAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTP 120
           GAHNYASRS+CYRCNSNA+K++D IGALPGWKSGDWIC+RIGCE HNYASRMECYKC TP
Sbjct: 66  GAHNYASRSSCYRCNSNAYKSLD-IGALPGWKSGDWICSRIGCETHNYASRMECYKCKTP 125

Query: 121 RDFG 122
           RDFG
Sbjct: 126 RDFG 128

[Close]

BLAST of MS011772 vs. NCBI nr
Match: XP_004139322.1 (zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >XP_031736555.1 zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >KAE8651526.1 hypothetical protein Csa_019441 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 100/124 (80.65%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNC 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+ +   H ++   +LAGDWYCNC
Sbjct: 6   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWYCNC 65

Query: 61  GAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTP 120
           GAHNYASRS+CY+CNSNA+K++D IGALPGWKSGDWIC+RIGCE HNYASRMECYKC  P
Sbjct: 66  GAHNYASRSSCYKCNSNAYKSLD-IGALPGWKSGDWICSRIGCETHNYASRMECYKCKAP 125

Query: 121 RDFG 122
           R FG
Sbjct: 126 RHFG 128

[Close]

BLAST of MS011772 vs. NCBI nr
Match: XP_022966014.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAH 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE++KT+    +LAGDWYC+CGAH
Sbjct: 6   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEFNKTE----VLAGDWYCHCGAH 65

Query: 61  NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF 120
           NYASRS+CYRC  NA+K+ D IGALPGWKSGDWIC RIGCE HNYASRMECYKC TPRDF
Sbjct: 66  NYASRSSCYRC--NAYKSAD-IGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDF 119

Query: 121 G 122
           G
Sbjct: 126 G 119

[Close]

BLAST of MS011772 vs. NCBI nr
Match: XP_023538268.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 4.8e-58
Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAH 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE++KT+    +LAGDWYC+CGAH
Sbjct: 6   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTE----VLAGDWYCHCGAH 65

Query: 61  NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF 120
           NYASRS+CYRC  NA+K+ D IGALPGWKSGDWIC RIGCE HNYASRMECYKC TPRDF
Sbjct: 66  NYASRSSCYRC--NAYKSAD-IGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDF 119

Query: 121 G 122
           G
Sbjct: 126 G 119

[Close]

BLAST of MS011772 vs. ExPASy TrEMBL
Match: A0A6J1CPG4 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111013106 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.8e-72
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAH 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTD HQALLAGDWYCNCGAH
Sbjct: 8   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTD-HQALLAGDWYCNCGAH 67

Query: 61  NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF 120
           NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF
Sbjct: 68  NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF 127

Query: 121 G 122
           G
Sbjct: 128 G 127

[Close]

BLAST of MS011772 vs. ExPASy TrEMBL
Match: A0A1S3C6B6 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103497392 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.2e-60
Identity = 102/124 (82.26%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNC 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+ +   H ++   +LAGDWYCNC
Sbjct: 6   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGDWYCNC 65

Query: 61  GAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTP 120
           GAHNYASRS+CYRCNSNA+K++D IGALPGWKSGDWIC+RIGCE HNYASRMECYKC TP
Sbjct: 66  GAHNYASRSSCYRCNSNAYKSLD-IGALPGWKSGDWICSRIGCETHNYASRMECYKCKTP 125

Query: 121 RDFG 122
           RDFG
Sbjct: 126 RDFG 128

[Close]

BLAST of MS011772 vs. ExPASy TrEMBL
Match: A0A0A0LIX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQA---LLAGDWYCNC 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+ +   H ++   +LAGDWYCNC
Sbjct: 6   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWYCNC 65

Query: 61  GAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTP 120
           GAHNYASRS+CY+CNSNA+K++D IGALPGWKSGDWIC+RIGCE HNYASRMECYKC  P
Sbjct: 66  GAHNYASRSSCYKCNSNAYKSLD-IGALPGWKSGDWICSRIGCETHNYASRMECYKCKAP 125

Query: 121 RDFGKKNYF 127
           R FGK   F
Sbjct: 126 RHFGKNIKF 133

[Close]

BLAST of MS011772 vs. ExPASy TrEMBL
Match: A0A6J1HSH3 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111465727 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.9e-59
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAH 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE++KT+    +LAGDWYC+CGAH
Sbjct: 6   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEFNKTE----VLAGDWYCHCGAH 65

Query: 61  NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF 120
           NYASRS+CYRC  NA+K+ D IGALPGWKSGDWIC RIGCE HNYASRMECYKC TPRDF
Sbjct: 66  NYASRSSCYRC--NAYKSAD-IGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDF 119

Query: 121 G 122
           G
Sbjct: 126 G 119

[Close]

BLAST of MS011772 vs. ExPASy TrEMBL
Match: A0A6J1FCS1 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444219 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.7e-57
Identity = 99/121 (81.82%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYCNCGAH 60
           SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE++KT+    +LAGDWYC+CGAH
Sbjct: 6   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTE----VLAGDWYCHCGAH 65

Query: 61  NYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNTPRDF 120
           NYASRS+CYRC  NA+K+ D I ALPGWKSGDWIC RIGCE HNYASRMECYKC TPR+F
Sbjct: 66  NYASRSSCYRC--NAYKSAD-ICALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRNF 119

Query: 121 G 122
           G
Sbjct: 126 G 119

[Close]

BLAST of MS011772 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 177.2 bits (448), Expect = 8.4e-45
Identity = 75/138 (54.35%), Postives = 97/138 (70.29%), Query Frame = 0


Query: 1   SGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHHQALLAGDWYC---NC 60
           +GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D +TY Y++T+    ++AGDWYC   NC
Sbjct: 4   TGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTE----VMAGDWYCGALNC 63

Query: 61  GAHNYASRSNCYRC--------------NSNAFKNVDNIGALPGWKSGDWICTRIGCEMH 120
           G+HNYASR++CYRC                 A+ N D     PGWK+GDW+C R+GC +H
Sbjct: 64  GSHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGN-DGAACPPGWKTGDWVCPRVGCGVH 123

Query: 121 NYASRMECYKCNTPRDFG 122
           NYASR EC+KC T RD+G
Sbjct: 124 NYASRAECFKCKTTRDYG 136

[Close]

BLAST of MS011772 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 9.0e-31
Identity = 65/165 (39.39%), Postives = 86/165 (52.12%), Query Frame = 0


Query: 3   GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYHKTDHHQALL 62
           GDW C  C H+NF++R++CQRCG             +  +GG   + + +        + 
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSD---VR 64

Query: 63  AGDWYC---NCGAHNYASRSNCYRCNSNAFKNVDNIGA-------------------LPG 122
            GDWYC   NCG HN+ASRS C++C +  FK+    G                    +PG
Sbjct: 65  PGDWYCTVGNCGTHNFASRSTCFKCGT--FKDETGAGGGGGGIGGPAMFDADIMRSRVPG 124

Query: 123 ------WKSGDWICTRIGCEMHNYASRMECYKCNTPRDFGKKNYF 127
                 WKSGDWICTRIGC  HN+ASRMEC++CN PRDF  +  F
Sbjct: 125 NGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTSF 164

[Close]

BLAST of MS011772 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 5.1e-26
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 3   GDWMCGVCEHVNFKKREACQRCGYPKYGG------------PDPTTYEYHKTDHHQALLA 62
           GDW C +C H+NF++R++CQRC  P+ GG            P  +++ ++       +  
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPD---VRP 64

Query: 63  GDWYCN---CGAHNYASRSNCYRCN-------------SNAFKNVDNIGALPG------- 120
           GDWYCN   CG HN+A+RS+C++C              +  F ++ N+G   G       
Sbjct: 65  GDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDM-NVGPRRGLFGFGGS 124

[Close]

BLAST of MS011772 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-14
Identity = 53/209 (25.36%), Postives = 72/209 (34.45%), Query Frame = 0


Query: 3   GDWMCGVCEHVNFKKREACQRCGYPK--------------------YGGPDPTTYEY--- 62
           GDW+C  C + N+  RE C++CG  K                    Y    P +++    
Sbjct: 50  GDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGS 109

Query: 63  --------HKTDHHQALLAGDWYCNCGAHNYASRSNCYRCNSNA---------------- 120
                   ++   H+   +GDW C CG HNY+SR  C +CN  A                
Sbjct: 110 LLAFSNATNQASVHKEWRSGDWICRCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAH 169

The following BLAST results are available for this feature:

BLAST of MS011772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143171.1	5.8e-72	99.17	uncharacterized RNA-binding protein C17H9.04c-like [Momordica charantia]	[more]
XP_008457786.1	6.7e-60	82.26	PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_0084...	[more]
XP_004139322.1	1.3e-58	80.65	zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >XP_031736...	[more]
XP_022966014.1	1.6e-58	84.30	zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]	[more]
XP_023538268.1	4.8e-58	83.47	zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. ...	[more]

BLAST of MS011772 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPG4	2.8e-72	99.17	uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=367...	[more]
A0A1S3C6B6	3.2e-60	82.26	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LIX1	1.6e-59	79.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1	[more]
A0A6J1HSH3	7.9e-59	84.30	zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita maxima OX=...	[more]
A0A6J1FCS1	9.7e-57	81.82	zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita moschata O...	[more]

BLAST of MS011772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26695.1	8.4e-45	54.35	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	9.0e-31	39.39	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	5.1e-26	34.97	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	2.6e-14	25.36	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 51..74 e-value: 0.0035 score: 26.6 coord: 91..117 e-value: 1.0E-5 score: 35.0 coord: 3..27 e-value: 4.3E-6 score: 36.2
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 3..29 e-value: 3.0E-4 score: 20.0 coord: 89..118 e-value: 1.6E-6 score: 27.3
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 5..24
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 93..114
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 1..30 score: 8.862888
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 89..120 score: 9.754972
None	No IPR available	GENE3D	4.10.1060.10		coord: 86..120 e-value: 1.6E-10 score: 42.1 coord: 43..76 e-value: 4.5E-8 score: 34.2 coord: 1..32 e-value: 2.1E-9 score: 38.5
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR23111:SF41	ZINC FINGER, RANBP2-TYPE-RELATED	coord: 1..122
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 87..121
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..31
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 45..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011772.1	MS011772.1	mRNA