MS011553 (gene) Bitter gourd (TR) v1

Overview


Name	MS011553
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	COMPASS-like H3K4 histone methylase component WDR5A
Location	scaffold239: 2824273 .. 2824638 (-)
RNA-Seq Expression	MS011553
Synteny	MS011553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTCCAAGAGTTCCAAGGCCATGAACAGGGTGTCTCCGACCTTGCTTTCTCCTCTGATTCTCGTTTTCTTGTATCGGCCTCCGACGATAAGACCCTTCGCCTCTGGGATGTCTCCTCTGGGTCCCTTATCAAGACCCTTAATGGCCATACCAACTACGTTTTCTGTGTTAACTTCAATCCCCAATCCAACATGATTGTTTCTGGCTCCTTCGACGAGACCGTCCGCATTTGGGACGTCAAAACCGGCAAGTGTCTTAAGGTTCTTCCGGCCCACTCCGATCCTGTCACCGGCGTGGATTTTAATCGTGACGGCTCGCTGATTGTTTCTAGCAGCTATGATGGATTATGTAGAATTTGGGATGCC

mRNA sequence

CCACTCCAAGAGTTCCAAGGCCATGAACAGGGTGTCTCCGACCTTGCTTTCTCCTCTGATTCTCGTTTTCTTGTATCGGCCTCCGACGATAAGACCCTTCGCCTCTGGGATGTCTCCTCTGGGTCCCTTATCAAGACCCTTAATGGCCATACCAACTACGTTTTCTGTGTTAACTTCAATCCCCAATCCAACATGATTGTTTCTGGCTCCTTCGACGAGACCGTCCGCATTTGGGACGTCAAAACCGGCAAGTGTCTTAAGGTTCTTCCGGCCCACTCCGATCCTGTCACCGGCGTGGATTTTAATCGTGACGGCTCGCTGATTGTTTCTAGCAGCTATGATGGATTATGTAGAATTTGGGATGCC

Coding sequence (CDS)

CCACTCCAAGAGTTCCAAGGCCATGAACAGGGTGTCTCCGACCTTGCTTTCTCCTCTGATTCTCGTTTTCTTGTATCGGCCTCCGACGATAAGACCCTTCGCCTCTGGGATGTCTCCTCTGGGTCCCTTATCAAGACCCTTAATGGCCATACCAACTACGTTTTCTGTGTTAACTTCAATCCCCAATCCAACATGATTGTTTCTGGCTCCTTCGACGAGACCGTCCGCATTTGGGACGTCAAAACCGGCAAGTGTCTTAAGGTTCTTCCGGCCCACTCCGATCCTGTCACCGGCGTGGATTTTAATCGTGACGGCTCGCTGATTGTTTCTAGCAGCTATGATGGATTATGTAGAATTTGGGATGCC

Protein sequence

PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIWDA

Homology

[Close]

BLAST of MS011553 vs. NCBI nr
Match: XP_022133170.1 (COMPASS-like H3K4 histone methylase component WDR5A [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 8.7e-65
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN
Sbjct: 60  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. NCBI nr
Match: XP_038883363.1 (COMPASS-like H3K4 histone methylase component WDR5A [Benincasa hispida] >XP_038883365.1 COMPASS-like H3K4 histone methylase component WDR5A [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 1.6e-63
Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFN
Sbjct: 60  PVQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. NCBI nr
Match: XP_004143426.1 (COMPASS-like H3K4 histone methylase component WDR5A [Cucumis sativus] >KGN48663.1 hypothetical protein Csa_003785 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 1.6e-63
Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFN
Sbjct: 60  PVQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. NCBI nr
Match: XP_008440490.1 (PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Cucumis melo] >KAA0036374.1 COMPASS-like H3K4 histone methylase component WDR5A [Cucumis melo var. makuwa] >TYK12768.1 COMPASS-like H3K4 histone methylase component WDR5A [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 1.6e-63
Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFN
Sbjct: 60  PVQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. NCBI nr
Match: XP_022950714.1 (COMPASS-like H3K4 histone methylase component WDR5A [Cucurbita moschata] >XP_022977220.1 COMPASS-like H3K4 histone methylase component WDR5A [Cucurbita maxima] >XP_023544202.1 COMPASS-like H3K4 histone methylase component WDR5A [Cucurbita pepo subsp. pepo] >KAG6604085.1 COMPASS-like H3K4 histone methylase component WDR5A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034249.1 COMPASS-like H3K4 histone methylase component WDR5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.3 bits (643), Expect = 2.1e-63
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           PL EFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSLIKTLNGHTNYVFCVNFN
Sbjct: 60  PLHEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLIKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. ExPASy Swiss-Prot
Match: Q9M2Z2 (COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3702 GN=WDR5A PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.3e-60
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P+QEF GHE G+SD+AFSSD+RF+VSASDDKTL+LWDV +GSLIKTL GHTNY FCVNFN
Sbjct: 63  PVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFN 122

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDV TGKCLKVLPAHSDPVT VDFNRDGSLIVSSSYDGLCRIW
Sbjct: 123 PQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIW 182

Query: 121 DA 123
           D+
Sbjct: 183 DS 184

[Close]

BLAST of MS011553 vs. ExPASy Swiss-Prot
Match: Q2KIG2 (WD repeat-containing protein 5 OS=Bos taurus OX=9913 GN=WDR5 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.1e-53
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 7   GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMI 66
           GH+ G+SD+A+SSDS  LVSASDDKTL++WDVSSG  +KTL GH+NYVFC NFNPQSN+I
Sbjct: 85  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144

Query: 67  VSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIWD 122
           VSGSFDE+VRIWDVKTGKCLK LPAHSDPV+ V FNRDGSLIVSSSYDGLCRIWD
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199

[Close]

BLAST of MS011553 vs. ExPASy Swiss-Prot
Match: P61964 (WD repeat-containing protein 5 OS=Homo sapiens OX=9606 GN=WDR5 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.1e-53
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 7   GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMI 66
           GH+ G+SD+A+SSDS  LVSASDDKTL++WDVSSG  +KTL GH+NYVFC NFNPQSN+I
Sbjct: 85  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144

Query: 67  VSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIWD 122
           VSGSFDE+VRIWDVKTGKCLK LPAHSDPV+ V FNRDGSLIVSSSYDGLCRIWD
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199

[Close]

BLAST of MS011553 vs. ExPASy Swiss-Prot
Match: P61965 (WD repeat-containing protein 5 OS=Mus musculus OX=10090 GN=Wdr5 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.1e-53
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 7   GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMI 66
           GH+ G+SD+A+SSDS  LVSASDDKTL++WDVSSG  +KTL GH+NYVFC NFNPQSN+I
Sbjct: 85  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144

Query: 67  VSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIWD 122
           VSGSFDE+VRIWDVKTGKCLK LPAHSDPV+ V FNRDGSLIVSSSYDGLCRIWD
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199

[Close]

BLAST of MS011553 vs. ExPASy Swiss-Prot
Match: Q498M4 (WD repeat-containing protein 5 OS=Rattus norvegicus OX=10116 GN=Wdr5 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.1e-53
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 7   GHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSNMI 66
           GH+ G+SD+A+SSDS  LVSASDDKTL++WDVSSG  +KTL GH+NYVFC NFNPQSN+I
Sbjct: 85  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144

Query: 67  VSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIWD 122
           VSGSFDE+VRIWDVKTGKCLK LPAHSDPV+ V FNRDGSLIVSSSYDGLCRIWD
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199

[Close]

BLAST of MS011553 vs. ExPASy TrEMBL
Match: A0A6J1BUJ4 (COMPASS-like H3K4 histone methylase component WDR5A OS=Momordica charantia OX=3673 GN=LOC111005841 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.2e-65
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN
Sbjct: 60  PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. ExPASy TrEMBL
Match: A0A5A7SYL9 (COMPASS-like H3K4 histone methylase component WDR5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003570 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 7.9e-64
Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFN
Sbjct: 60  PVQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. ExPASy TrEMBL
Match: A0A0A0KGK9 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G497140 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 7.9e-64
Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFN
Sbjct: 60  PVQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. ExPASy TrEMBL
Match: A0A1S3B1Z0 (COMPASS-like H3K4 histone methylase component WDR5A OS=Cucumis melo OX=3656 GN=LOC103484903 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 7.9e-64
Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P+QEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSL+KTLNGHTNYVFCVNFN
Sbjct: 60  PVQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. ExPASy TrEMBL
Match: A0A6J1ILQ0 (COMPASS-like H3K4 histone methylase component WDR5A OS=Cucurbita maxima OX=3661 GN=LOC111477595 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.0e-63
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           PL EFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVS+GSLIKTLNGHTNYVFCVNFN
Sbjct: 60  PLHEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLIKTLNGHTNYVFCVNFN 119

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDVK+GKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW
Sbjct: 120 PQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 179

Query: 121 DA 123
           DA
Sbjct: 180 DA 181

[Close]

BLAST of MS011553 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 233.4 bits (594), Expect = 9.6e-62
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P+QEF GHE G+SD+AFSSD+RF+VSASDDKTL+LWDV +GSLIKTL GHTNY FCVNFN
Sbjct: 63  PVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFN 122

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
           PQSNMIVSGSFDETVRIWDV TGKCLKVLPAHSDPVT VDFNRDGSLIVSSSYDGLCRIW
Sbjct: 123 PQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIW 182

Query: 121 DA 123
           D+
Sbjct: 183 DS 184

[Close]

BLAST of MS011553 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-45
Identity = 79/122 (64.75%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 2   LQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSG-SLIKTLNGHTNYVFCVNFN 61
           +  ++GH  G+SDLA+SSDS +  SASDD TLR+WD  S    +K L GHTN+VFCVNFN
Sbjct: 78  IHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFN 137

Query: 62  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 121
           P SN+IVSGSFDET+RIW+VKTGKC++++ AHS P++ V FNRDGSLIVS+S+DG C+IW
Sbjct: 138 PPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIW 197

Query: 122 DA 123
           DA
Sbjct: 198 DA 199

[Close]

BLAST of MS011553 vs. TAIR 10
Match: AT5G52820.1 (WD-40 repeat family protein / notchless protein, putative )

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 44/120 (36.67%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   PLQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFN 60
           P +   GH+Q V+ + FS D +++ SAS DK++RLW+  +G  +    GH   V+ V+++
Sbjct: 352 PKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWS 411

Query: 61  PQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIW 120
             S +++SGS D T++IW+++T K  + LP H+D V  VD++ DG  +VS   D + ++W
Sbjct: 412 ADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471

[Close]

BLAST of MS011553 vs. TAIR 10
Match: AT2G41500.1 (WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related )

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-20
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 2   LQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNP 61
           LQ F+GH   ++ +AF    ++L + S DKT RLWD+++G+ +    GH+  V+ + F  
Sbjct: 332 LQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQ 391

Query: 62  QSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIWD 121
              +  S   D   R+WD++TG+ + V   H  PV  V+F+ +G  + S   D  CRIWD
Sbjct: 392 DGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWD 451

[Close]

BLAST of MS011553 vs. TAIR 10
Match: AT5G25150.1 (TBP-associated factor 5 )

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-20
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 5   FQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSSGSLIKTLNGHTNYVFCVNFNPQSN 64
           ++GH   V D  FS    +  S S D+T R+W +     ++ + GH + V CV ++P  N
Sbjct: 456 YKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCN 515

Query: 65  MIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGLCRIWD 122
            I +GS D+TVR+WDV+TG+C+++   H   V  +  + DG  + S   DG   +WD
Sbjct: 516 YIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWD 572

The following BLAST results are available for this feature:

BLAST of MS011553 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133170.1	8.7e-65	100.00	COMPASS-like H3K4 histone methylase component WDR5A [Momordica charantia]	[more]
XP_038883363.1	1.6e-63	96.72	COMPASS-like H3K4 histone methylase component WDR5A [Benincasa hispida] >XP_0388...	[more]
XP_004143426.1	1.6e-63	96.72	COMPASS-like H3K4 histone methylase component WDR5A [Cucumis sativus] >KGN48663....	[more]
XP_008440490.1	1.6e-63	96.72	PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Cucumis melo] >K...	[more]
XP_022950714.1	2.1e-63	97.54	COMPASS-like H3K4 histone methylase component WDR5A [Cucurbita moschata] >XP_022...	[more]

BLAST of MS011553 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2Z2	1.3e-60	87.70	COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3...	[more]
Q2KIG2	6.1e-53	81.74	WD repeat-containing protein 5 OS=Bos taurus OX=9913 GN=WDR5 PE=2 SV=1	[more]
P61964	6.1e-53	81.74	WD repeat-containing protein 5 OS=Homo sapiens OX=9606 GN=WDR5 PE=1 SV=1	[more]
P61965	6.1e-53	81.74	WD repeat-containing protein 5 OS=Mus musculus OX=10090 GN=Wdr5 PE=1 SV=1	[more]
Q498M4	6.1e-53	81.74	WD repeat-containing protein 5 OS=Rattus norvegicus OX=10116 GN=Wdr5 PE=1 SV=1	[more]

BLAST of MS011553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BUJ4	4.2e-65	100.00	COMPASS-like H3K4 histone methylase component WDR5A OS=Momordica charantia OX=36...	[more]
A0A5A7SYL9	7.9e-64	96.72	COMPASS-like H3K4 histone methylase component WDR5A OS=Cucumis melo var. makuwa ...	[more]
A0A0A0KGK9	7.9e-64	96.72	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G...	[more]
A0A1S3B1Z0	7.9e-64	96.72	COMPASS-like H3K4 histone methylase component WDR5A OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1ILQ0	1.0e-63	97.54	COMPASS-like H3K4 histone methylase component WDR5A OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of MS011553 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49660.1	9.6e-62	87.70	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G02730.1	2.1e-45	64.75	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52820.1	2.0e-22	36.67	WD-40 repeat family protein / notchless protein, putative	[more]
AT2G41500.1	3.1e-20	35.00	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related	[more]
AT5G25150.1	3.1e-20	35.04	TBP-associated factor 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 108..122 score: 34.95 coord: 66..80 score: 42.73 coord: 24..38 score: 44.15
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 1..37 e-value: 1.3E-7 score: 41.3 coord: 82..121 e-value: 2.0E-12 score: 57.3 coord: 40..79 e-value: 4.9E-12 score: 56.0
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 83..121 e-value: 1.1E-10 score: 41.8 coord: 42..79 e-value: 2.0E-9 score: 37.9 coord: 1..37 e-value: 2.1E-10 score: 41.0
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 89..122 score: 15.888781
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 5..46 score: 18.69591
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 47..88 score: 18.963255
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..122 e-value: 3.7E-60 score: 205.3
None	No IPR available	PANTHER	PTHR22847	WD40 REPEAT PROTEIN	coord: 6..121
None	No IPR available	PANTHER	PTHR22847:SF706	WD REPEAT DOMAIN 5	coord: 6..121
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 47..84 score: 14.608301
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 5..42 score: 14.107395
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 89..122 score: 14.397394
None	No IPR available	CDD	cd00200	WD40	coord: 1..122 e-value: 6.18294E-44 score: 142.859
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 24..38
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 66..80
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 108..122
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 2..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011553.1	MS011553.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding