MS011461 (gene) Bitter gourd (TR) v1

Overview
NameMS011461
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold239: 2143794 .. 2144114 (+)
RNA-Seq ExpressionMS011461
SyntenyMS011461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATAGTAGGCAGGCTCCGATTCCTGCAGAGAGAGCAAGTGATCGATCATCGTGTTCCTTCCTTCTTCTTTGGTGCTCCGGTGCTCGTCGATCAGCCCCTGCAAGAACGCGTCCATCCGCTTCGCCAATTTCGACACCTTTCTCTCGTAGCCATTAGGGATCCAATTCAGCATCGGAATGAAATCGCCGAGATTCGACACTCCTCCGAGCGATACAATCTGCTTAATCAGCTCTCTGAACGGCCTCGCCTCTTCCTCATCGGTCACGTCGTCTCCGAAATACCTCTTCCCTGCCGCCATTCTCATGGAGATGTTGAACGT

mRNA sequence

TCCATAGTAGGCAGGCTCCGATTCCTGCAGAGAGAGCAAGTGATCGATCATCGTGTTCCTTCCTTCTTCTTTGGTGCTCCGGTGCTCGTCGATCAGCCCCTGCAAGAACGCGTCCATCCGCTTCGCCAATTTCGACACCTTTCTCTCGTAGCCATTAGGGATCCAATTCAGCATCGGAATGAAATCGCCGAGATTCGACACTCCTCCGAGCGATACAATCTGCTTAATCAGCTCTCTGAACGGCCTCGCCTCTTCCTCATCGGTCACGTCGTCTCCGAAATACCTCTTCCCTGCCGCCATTCTCATGGAGATGTTGAACGT

Coding sequence (CDS)

TCCATAGTAGGCAGGCTCCGATTCCTGCAGAGAGAGCAAGTGATCGATCATCGTGTTCCTTCCTTCTTCTTTGGTGCTCCGGTGCTCGTCGATCAGCCCCTGCAAGAACGCGTCCATCCGCTTCGCCAATTTCGACACCTTTCTCTCGTAGCCATTAGGGATCCAATTCAGCATCGGAATGAAATCGCCGAGATTCGACACTCCTCCGAGCGATACAATCTGCTTAATCAGCTCTCTGAACGGCCTCGCCTCTTCCTCATCGGTCACGTCGTCTCCGAAATACCTCTTCCCTGCCGCCATTCTCATGGAGATGTTGAACGT

Protein sequence

SIVGRLRFLQREQVIDHRVPSFFFGAPVLVDQPLQERVHPLRQFRHLSLVAIRDPIQHRNEIAEIRHSSERYNLLNQLSERPRLFLIGHVVSEIPLPCRHSHGDVER
Homology
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BLAST of MS011461 vs. TAIR 10
Match: AT4G37409.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 35/107 (32.71%), Postives = 52/107 (48.60%), Query Frame = 0 

Query: 1   SIVGRLRFLQREQVIDHRVPSFFFGAPVLVDQPLQERVHPLRQFRHLSLVAIRDPIQHRN 60
           S+V R+  LQREQVI+H V  F   A  LV Q LQ  +       HL L A  + +    
Sbjct: 27  SVVLRVVLLQREQVINHSVTVFITLA--LVKQTLQHFIDDFCCSFHLLLKAPSEYLHEGQ 86

Query: 61  EIAEIRHSSERYNLLNQLSERPRLFLIGHVVSEIPLPCRHSHGDVER 108
             + +  ++   +   +L E+   F +  +V+ + LPC H H  VER
Sbjct: 87  VFSRMPRATISGDESKKLLEQLCFFFVADIVAVVYLPCNHPHDIVER 131

The following BLAST results are available for this feature:
BLAST of MS011461 vs.
Match NameE-valueIdentityDescription
BLAST of MS011461 vs.
Match NameE-valueIdentityDescription
BLAST of MS011461 vs.
Match NameE-valueIdentityDescription
BLAST of MS011461 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37409.11.0e-0632.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS011461.1MS011461.1mRNA