MS011343 (gene) Bitter gourd (TR) v1

Overview


Name	MS011343
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	copper ion binding;cobalt ion binding;zinc ion binding
Location	scaffold239: 1188956 .. 1189315 (-)
RNA-Seq Expression	MS011343
Synteny	MS011343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCTTGGCATTCGGAGGGAAGATCTGCCCAAGTACGAGGAGCAGTTGGAACTTAAAATTTCCAAGGCACAATTGGAAGAGCTGAAGAAAGATGCTCTTGAGGCAATGGAAACTCAAAAGAAGCGGTATGTAGTTTGTTGTCTTGATAATTATTATATTGCAAAAAACTTAGTCTGGATTGAGATAGCTTTGTCCAGCAGATAATTCTGTGTTACCCTTTTAAGTATGACGTTAACTAATTTATATTTTTGTGCTGCCTTCTTTTTGAAACTTATGCAACTTTCCCTCTTTGTTTTCAGTGAGGAGTTTAAAGACGAGGAAATGGTGGATACGAAGTCTTTAGACGTGAGAAACTTCCTG

mRNA sequence

AGGCTTGGCATTCGGAGGGAAGATCTGCCCAAGTACGAGGAGCAGTTGGAACTTAAAATTTCCAAGGCACAATTGGAAGAGCTGAAGAAAGATGCTCTTGAGGCAATGGAAACTCAAAAGAAGCGTGAGGAGTTTAAAGACGAGGAAATGGTGGATACGAAGTCTTTAGACGTGAGAAACTTCCTG

Coding sequence (CDS)

AGGCTTGGCATTCGGAGGGAAGATCTGCCCAAGTACGAGGAGCAGTTGGAACTTAAAATTTCCAAGGCACAATTGGAAGAGCTGAAGAAAGATGCTCTTGAGGCAATGGAAACTCAAAAGAAGCGTGAGGAGTTTAAAGACGAGGAAATGGTGGATACGAAGTCTTTAGACGTGAGAAACTTCCTG

Protein sequence

RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRNFL

Homology

[Close]

BLAST of MS011343 vs. NCBI nr
Match: XP_038881119.1 (probable ATP synthase 24 kDa subunit, mitochondrial [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN
Sbjct: 179 KLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 238

Query: 61  FL 63
           FL
Sbjct: 239 FL 240

[Close]

BLAST of MS011343 vs. NCBI nr
Match: XP_022132532.1 (probable ATP synthase 24 kDa subunit, mitochondrial [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 3.9e-21
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIRREDLPKYEEQLELKISKAQL+ELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN
Sbjct: 179 KLGIRREDLPKYEEQLELKISKAQLDELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 238

Query: 61  FL 63
           FL
Sbjct: 239 FL 240

[Close]

BLAST of MS011343 vs. NCBI nr
Match: XP_022963251.1 (probable ATP synthase 24 kDa subunit, mitochondrial [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           ++GIRREDLPKYEEQLELKISKAQLE+LKKDALEAMETQKKREEFKDEEMVDTKSLDVRN
Sbjct: 229 KIGIRREDLPKYEEQLELKISKAQLEDLKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 288

Query: 61  FL 63
           FL
Sbjct: 289 FL 290

[Close]

BLAST of MS011343 vs. NCBI nr
Match: XP_008440128.1 (PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Cucumis melo] >TYK12972.1 putative ATP synthase 24 kDa subunit [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIRREDLPKYEEQLELKISKAQLEE+KKDALEAMETQKKREEFKD+EMVDTKSLDVRN
Sbjct: 179 KLGIRREDLPKYEEQLELKISKAQLEEIKKDALEAMETQKKREEFKDDEMVDTKSLDVRN 238

Query: 61  FL 63
           FL
Sbjct: 239 FL 240

[Close]

BLAST of MS011343 vs. NCBI nr
Match: KAG7027107.1 (putative ATP synthase 24 kDa subunit, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           ++GIRREDLPKYEEQLELKISKAQLE+LKKDALEAMETQKKREEFKDEEMVDTKSLDVRN
Sbjct: 291 KIGIRREDLPKYEEQLELKISKAQLEDLKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 350

Query: 61  FL 63
           FL
Sbjct: 351 FL 352

[Close]

BLAST of MS011343 vs. ExPASy Swiss-Prot
Match: Q9SJ12 (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIR+EDLPKYEE LEL ++KAQL+ELK DA+EAME+QKK+EEF+DEEM D KSLD+RN
Sbjct: 179 KLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRN 238

Query: 61  FL 63
           F+
Sbjct: 239 FI 240

[Close]

BLAST of MS011343 vs. ExPASy TrEMBL
Match: A0A6J1BU34 (probable ATP synthase 24 kDa subunit, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005367 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIRREDLPKYEEQLELKISKAQL+ELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN
Sbjct: 179 KLGIRREDLPKYEEQLELKISKAQLDELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 238

Query: 61  FL 63
           FL
Sbjct: 239 FL 240

[Close]

BLAST of MS011343 vs. ExPASy TrEMBL
Match: A0A5D3CNN3 (Putative ATP synthase 24 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005690 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIRREDLPKYEEQLELKISKAQLEE+KKDALEAMETQKKREEFKD+EMVDTKSLDVRN
Sbjct: 179 KLGIRREDLPKYEEQLELKISKAQLEEIKKDALEAMETQKKREEFKDDEMVDTKSLDVRN 238

Query: 61  FL 63
           FL
Sbjct: 239 FL 240

[Close]

BLAST of MS011343 vs. ExPASy TrEMBL
Match: A0A0A0KKY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486940 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIRREDLPKYEEQLELKISKAQLEE+KKDALEAMETQKKREEFKD+EMVDTKSLDVRN
Sbjct: 179 KLGIRREDLPKYEEQLELKISKAQLEEMKKDALEAMETQKKREEFKDDEMVDTKSLDVRN 238

Query: 61  FL 63
           FL
Sbjct: 239 FL 240

[Close]

BLAST of MS011343 vs. ExPASy TrEMBL
Match: A0A6J1HFN0 (probable ATP synthase 24 kDa subunit, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463520 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           ++GIRREDLPKYEEQLELKISKAQLE+LKKDALEAMETQKKREEFKDEEMVDTKSLDVRN
Sbjct: 229 KIGIRREDLPKYEEQLELKISKAQLEDLKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 288

Query: 61  FL 63
           FL
Sbjct: 289 FL 290

[Close]

BLAST of MS011343 vs. ExPASy TrEMBL
Match: A0A1S3B0D0 (probable ATP synthase 24 kDa subunit, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484687 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIRREDLPKYEEQLELKISKAQLEE+KKDALEAMETQKKREEFKD+EMVDTKSLDVRN
Sbjct: 179 KLGIRREDLPKYEEQLELKISKAQLEEIKKDALEAMETQKKREEFKDDEMVDTKSLDVRN 238

Query: 61  FL 63
           FL
Sbjct: 239 FL 240

[Close]

BLAST of MS011343 vs. TAIR 10
Match: AT2G21870.1 (copper ion binding;cobalt ion binding;zinc ion binding )

HSP 1 Score: 90.9 bits (224), Expect = 3.9e-19
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRN 60
           +LGIR+EDLPKYEE LEL ++KAQL+ELK DA+EAME+QKK+EEF+DEEM D KSLD+RN
Sbjct: 179 KLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRN 238

Query: 61  FL 63
           F+
Sbjct: 239 FI 240

[Close]

BLAST of MS011343 vs. TAIR 10
Match: AT2G21870.2 (copper ion binding;cobalt ion binding;zinc ion binding )

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-10
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1   RLGIRREDLPKYEEQLELKISKAQLEELKKDALEAMETQKKR 43
           +LGIR+EDLPKYEE LEL ++KAQL+ELK DA+EAME+QKK+
Sbjct: 179 KLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKK 220

The following BLAST results are available for this feature:

BLAST of MS011343 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881119.1	1.8e-21	98.39	probable ATP synthase 24 kDa subunit, mitochondrial [Benincasa hispida]	[more]
XP_022132532.1	3.9e-21	96.77	probable ATP synthase 24 kDa subunit, mitochondrial [Momordica charantia]	[more]
XP_022963251.1	6.7e-21	95.16	probable ATP synthase 24 kDa subunit, mitochondrial [Cucurbita moschata]	[more]
XP_008440128.1	6.7e-21	95.16	PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Cucumis melo] >T...	[more]
KAG7027107.1	6.7e-21	95.16	putative ATP synthase 24 kDa subunit, mitochondrial [Cucurbita argyrosperma subs...	[more]

BLAST of MS011343 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ12	5.5e-18	74.19	Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana OX=3...	[more]

BLAST of MS011343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BU34	1.9e-21	96.77	probable ATP synthase 24 kDa subunit, mitochondrial OS=Momordica charantia OX=36...	[more]
A0A5D3CNN3	3.2e-21	95.16	Putative ATP synthase 24 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KKY9	3.2e-21	95.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486940 PE=4 SV=1	[more]
A0A6J1HFN0	3.2e-21	95.16	probable ATP synthase 24 kDa subunit, mitochondrial OS=Cucurbita moschata OX=366...	[more]
A0A1S3B0D0	3.2e-21	95.16	probable ATP synthase 24 kDa subunit, mitochondrial OS=Cucumis melo OX=3656 GN=L...	[more]

BLAST of MS011343 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21870.1	3.9e-19	74.19	copper ion binding;cobalt ion binding;zinc ion binding	[more]
AT2G21870.2	3.3e-10	73.81	copper ion binding;cobalt ion binding;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..42
IPR031432	MALE GAMETOPHYTE DEFECTIVE 1	PFAM	PF15704	Mt_ATP_synt	coord: 1..41 e-value: 1.7E-12 score: 47.7
IPR031432	MALE GAMETOPHYTE DEFECTIVE 1	PANTHER	PTHR36013	ATP SYNTHASE 24 KDA SUBUNIT, MITOCHONDRIAL-RELATED	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011343.1	MS011343.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009555	pollen development