MS011316 (gene) Bitter gourd (TR) v1

Overview


Name	MS011316
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	WD repeat domain-containing protein 83
Location	scaffold239: 936741 .. 938874 (+)
RNA-Seq Expression	MS011316
Synteny	MS011316

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTATCGGAATTACCAACTAAGGAGGCTAACGTCCTCAAGGGGCATGAAGGTGCAGTTCTAGCCGCGAGGTTCAATGCAGATGGCAATTATTGCCTCAGCTGTGGCAAGGACCGCACTATTCGCCTTTGGAATCCTCACCGTGGTATCCACATTAAGACCTACAAATCACATGGCCGTGAAGTCCGTGATGTCCATGTCACCCCGTATTTTCTCTATCTTCTTGCTCTTTGTATAATTAAGCCATTTTGAGCTTAGAGAGTTCTCATAGATTTAAATTTTAGGGCTATGTTGCACTGTGGCTGATCACTGTTATATGTGCTCCCCTATTTGCTTTAGAGACAACTCCAAGTTATGTTCTTGCGGTGGTGATCGGCAAGTCTTCTATTGGGATGTAGCTACAGGTCGTGTAATTCGAAAGTTCCGTGGTCATGATGGCGAGGTTCACTGCTTCCCCCAATGATATAACTTTTCAGCAAATTTGGTGTCACGATGTTGGGTAGTTGTTATGTCATGCAACTTGTATTTTTTTTTTTTTTTTACTTTGTTTACTCTATTTAGCTCAGTTATAATTAATGTCAACATTCTGTCAAAGCATCTAGATAAAGAATTAGTGATTTAATTCCTCATACTCCAATTACAAAAAGAAAAAAAAAATCTCCGTCCACAATTTTTATTTCCTTTTACTGTAAGCAAAATGCCTTTGAAAGGATTCATCTAATTTCATTTCATTTATTGTTGTAATATCTTATAATTATCTACATTCCTCTATTTTAGGTGAATGCTGTGAAATTTAATGAGTATTCTTCTGTAGTAGTCTCAGCAGGCTATGATCAATCATTGCGTGCTTGGGATTGCAGATCCCACAGCACTGAGCCAATTCAGGTTTGACGTTCTACTTCTTACTTCACTCATCAAAAAGGTCCATTAGCTGTCAGTCTAGCTGATTGTTTATCTTATCTACTTATTCTTCAGATCATTGATACATTTTCAGACAGTGTAATGTCTGTTTGCTTAACAAAAAGTGAAATTATTGGAGGAAGTGTTGATGGCACAGTTCGAACATTTGACATACGAATCGGCAGGTAAGGGGTCATGTAGTTTGGGAAGGAAAAAACACCACAAACATGAATATTCTAATTGAATTTCAATTGCTATGACAATATTTCGAGAATTTTCCAATGAAGATCAATTGAGTTTTTTCCACTTCTTACAGACCATAATTTCAGCCATGATAATATTTTAGATGATTTTATTAATAAGATGGTTTTGTTCTTTCTGATTCCCTCAAAGGATTCTTGTTCAATAATTTGGCTGTGTGCAGTGGGGGAGGATATCTTCTGTTCCCACTTTCTTTCATATATGATTCTGGTTTAATACATTATTTCTCATCCAAGAAAAATGATTTTGAATATTAGTTATTAAACAATGCAAAAGTGAGAAGCCACATGCCTTCACTAATGATGACTCTTCTTTTGTTTTACAAATAGAGAAATATCAGATAACTTGGGGCAGCCTGTAAACTGTATCTCCATGTCCAATGATGCTAATTGCATATTAGCTAGTTGCTTAGATTCCACTCTCCGTCTATTGGACAGGTACGTCCAACTTTTGTAATAATGATGTAAATGGTTCTTCATCACAGTGTTTTATTTAGTTCTCAAAATTCTCAAACTGGTTTTTTCGTGTTTTAAGGTCTTCTGGCGAGCTATTACAGGAATATAAAGGCCATACTTGTAAGGTTAGCATGATTTGAATCTTGGCAATGCCATACTCATTTAATTTCATCTGTTTAACAATCAATTTTCTAACGACAATGGGTATGTCTTCATCATGATTTTAGTGTACTTTTGTATTCTTGTTGTGCTCTAGTAGATTTAAAAATATATATATATATATATTAGACGCCTTCAATTATTTTCTAAATCTTGACTTTCATACTTTATAAGTCATTACATCTCTTGTATTTTCACTACAGTCTTACAAGCTGGATTGCTGCCTTACCAATAATGATGCACATGTAACTGGCGGATCTGAAGATGGATACATTTATTTTTGGGATTTAGTAGATGCATCTGTTGTCTCCAGTTTCCGAGCCCATTCCTCTGTTGTAAGTTTGTATTCCTTCAAC

mRNA sequence

ATGAGTGTATCGGAATTACCAACTAAGGAGGCTAACGTCCTCAAGGGGCATGAAGGTGCAGTTCTAGCCGCGAGGTTCAATGCAGATGGCAATTATTGCCTCAGCTGTGGCAAGGACCGCACTATTCGCCTTTGGAATCCTCACCGTGGTATCCACATTAAGACCTACAAATCACATGGCCGTGAAGTCCGTGATGTCCATGTCACCCCAGACAACTCCAAGTTATGTTCTTGCGGTGGTGATCGGCAAGTCTTCTATTGGGATGTAGCTACAGGTCGTGTAATTCGAAAGTTCCGTGGTCATGATGGCGAGGTGAATGCTGTGAAATTTAATGAGTATTCTTCTGTAGTAGTCTCAGCAGGCTATGATCAATCATTGCGTGCTTGGGATTGCAGATCCCACAGCACTGAGCCAATTCAGATCATTGATACATTTTCAGACAGTGTAATGTCTGTTTGCTTAACAAAAAGTGAAATTATTGGAGGAAGTGTTGATGGCACAGTTCGAACATTTGACATACGAATCGGCAGAGAAATATCAGATAACTTGGGGCAGCCTGTAAACTGTATCTCCATGTCCAATGATGCTAATTGCATATTAGCTAGTTGCTTAGATTCCACTCTCCGTCTATTGGACAGGTCTTCTGGCGAGCTATTACAGGAATATAAAGGCCATACTTGTAAGTCTTACAAGCTGGATTGCTGCCTTACCAATAATGATGCACATGTAACTGGCGGATCTGAAGATGGATACATTTATTTTTGGGATTTAGTAGATGCATCTGTTGTCTCCAGTTTCCGAGCCCATTCCTCTGTTGTAAGTTTGTATTCCTTCAAC

Coding sequence (CDS)

ATGAGTGTATCGGAATTACCAACTAAGGAGGCTAACGTCCTCAAGGGGCATGAAGGTGCAGTTCTAGCCGCGAGGTTCAATGCAGATGGCAATTATTGCCTCAGCTGTGGCAAGGACCGCACTATTCGCCTTTGGAATCCTCACCGTGGTATCCACATTAAGACCTACAAATCACATGGCCGTGAAGTCCGTGATGTCCATGTCACCCCAGACAACTCCAAGTTATGTTCTTGCGGTGGTGATCGGCAAGTCTTCTATTGGGATGTAGCTACAGGTCGTGTAATTCGAAAGTTCCGTGGTCATGATGGCGAGGTGAATGCTGTGAAATTTAATGAGTATTCTTCTGTAGTAGTCTCAGCAGGCTATGATCAATCATTGCGTGCTTGGGATTGCAGATCCCACAGCACTGAGCCAATTCAGATCATTGATACATTTTCAGACAGTGTAATGTCTGTTTGCTTAACAAAAAGTGAAATTATTGGAGGAAGTGTTGATGGCACAGTTCGAACATTTGACATACGAATCGGCAGAGAAATATCAGATAACTTGGGGCAGCCTGTAAACTGTATCTCCATGTCCAATGATGCTAATTGCATATTAGCTAGTTGCTTAGATTCCACTCTCCGTCTATTGGACAGGTCTTCTGGCGAGCTATTACAGGAATATAAAGGCCATACTTGTAAGTCTTACAAGCTGGATTGCTGCCTTACCAATAATGATGCACATGTAACTGGCGGATCTGAAGATGGATACATTTATTTTTGGGATTTAGTAGATGCATCTGTTGTCTCCAGTTTCCGAGCCCATTCCTCTGTTGTAAGTTTGTATTCCTTCAAC

Protein sequence

MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREISDNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNNDAHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN

Homology

[Close]

BLAST of MS011316 vs. NCBI nr
Match: XP_022133372.1 (WD repeat domain-containing protein 83 [Momordica charantia])

HSP 1 Score: 565.8 bits (1457), Expect = 2.0e-157
Identity = 272/279 (97.49%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVT DNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA
Sbjct: 61  REVRDVHVTLDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANCILASCLDSTLRLLDR SGELLQEYKGHTCKSYKLDCCLTNND
Sbjct: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRYSGELLQEYKGHTCKSYKLDCCLTNND 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVV+  S++
Sbjct: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVTSVSYH 279

[Close]

BLAST of MS011316 vs. NCBI nr
Match: KAA0025565.1 (WD repeat domain-containing protein 83 [Cucumis melo var. makuwa] >TYK12439.1 WD repeat domain-containing protein 83 [Cucumis melo var. makuwa])

HSP 1 Score: 564.3 bits (1453), Expect = 5.8e-157
Identity = 267/277 (96.39%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKE+NVLKGHEG VLAARFN+DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKESNVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVTPDNSKLCSCGGDRQVFYWDV+TGRVIRKFRGHDGEVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFD+RIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTN D
Sbjct: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYS 278
           AHVTGGSEDG++YFWDLVDASVVS FRAHSSVVSLYS
Sbjct: 241 AHVTGGSEDGFVYFWDLVDASVVSKFRAHSSVVSLYS 277

[Close]

BLAST of MS011316 vs. NCBI nr
Match: XP_022949610.1 (WD repeat domain-containing protein 83 [Cucurbita moschata] >XP_023543192.1 WD repeat domain-containing protein 83 [Cucurbita pepo subsp. pepo] >KAG7034421.1 WD repeat domain-containing protein 83, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 561.6 bits (1446), Expect = 3.8e-156
Identity = 266/279 (95.34%), Postives = 274/279 (98.21%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKEANVLKGHEG VLAARFN+DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKEANVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVTPDNSKLCSCGGDRQVFYWDV+TGRVIRKFRGHDGEVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFD+RIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANC+LASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTN D
Sbjct: 181 DNLGQPVNCISMSNDANCVLASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           AHVTGGSEDGYIYFWDLVDASVVS FRAHSSVV+  S++
Sbjct: 241 AHVTGGSEDGYIYFWDLVDASVVSKFRAHSSVVTSVSYH 279

[Close]

BLAST of MS011316 vs. NCBI nr
Match: KAG6604265.1 (WD repeat domain-containing protein 83, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 560.5 bits (1443), Expect = 8.4e-156
Identity = 266/274 (97.08%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKEANVLKGHEG VLAARFN+DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKEANVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVTPDNSKLCSCGGDRQVFYWDV+TGRVIRKFRGHDGEVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFD+RIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTN D
Sbjct: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVS 275
           AHVTGGSEDGYIYFWDLVDASVVS FRAHSSVV+
Sbjct: 241 AHVTGGSEDGYIYFWDLVDASVVSKFRAHSSVVT 274

[Close]

BLAST of MS011316 vs. NCBI nr
Match: XP_008440996.1 (PREDICTED: WD repeat domain-containing protein 83 [Cucumis melo])

HSP 1 Score: 558.9 bits (1439), Expect = 2.4e-155
Identity = 264/279 (94.62%), Postives = 274/279 (98.21%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKE+NVLKGHEG VLAARFN+DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKESNVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVTPDNSKLCSCGGDRQVFYWDV+TGRVIRKFRGHDGEVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFD+RIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTN D
Sbjct: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           AHVTGGSEDG++YFWDLVDASVVS FRAHSSVV+  S++
Sbjct: 241 AHVTGGSEDGFVYFWDLVDASVVSKFRAHSSVVTSVSYH 279

[Close]

BLAST of MS011316 vs. ExPASy Swiss-Prot
Match: Q5XGI5 (WD repeat domain-containing protein 83 OS=Xenopus tropicalis OX=8364 GN=wdr83 PE=2 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.8e-84
Identity = 143/275 (52.00%), Postives = 189/275 (68.73%), Query Frame = 0


Query: 5   ELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
           ELP K  + L+ ++GAV A RFN DGNYC++CG D+T++LWNPH+G  +KTY  HG EV 
Sbjct: 12  ELPQKLQHKLECNQGAVRAVRFNVDGNYCMTCGSDKTLKLWNPHKGTLLKTYSGHGYEVL 71

Query: 65  DVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQ 124
           D   + DNS++CSC  D+ V  WDVA G+V+RKFRGH G+VN V+FNE ++V++S   D 
Sbjct: 72  DTAGSYDNSQMCSCSSDKTVILWDVAQGQVVRKFRGHAGKVNCVQFNEEATVIMSGSIDS 131

Query: 125 SLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREISDNLG 184
           S+R WDCRS   E IQI+D   D + S+ ++  EI+ GSVDG +R +D+R G   +D LG
Sbjct: 132 SIRCWDCRSRRPEAIQILDEAKDGISSIKISDHEILAGSVDGNLRRYDLRKGEMCADYLG 191

Query: 185 QPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNNDAHVT 244
            P+ C+S S D+ C+LAS LDSTLRLLD+ +GELL EY GH   SYKLD CL+  D HV 
Sbjct: 192 SPITCVSFSQDSQCLLASSLDSTLRLLDKDTGELLGEYTGHQNHSYKLDSCLSEKDTHVL 251

Query: 245 GGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
             SEDG + FWDLV+ S+V       + V   SF+
Sbjct: 252 SCSEDGTVCFWDLVEGSLVLKLPVGKAAVQSLSFH 286

[Close]

BLAST of MS011316 vs. ExPASy Swiss-Prot
Match: Q9BRX9 (WD repeat domain-containing protein 83 OS=Homo sapiens OX=9606 GN=WDR83 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.1e-84
Identity = 144/275 (52.36%), Postives = 187/275 (68.00%), Query Frame = 0


Query: 5   ELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
           ELP K    L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct: 12  ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query: 65  DVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQ 124
           D   + DNS LCS GGD+ V  WDVA+G+V+RKFRGH G+VN V+FNE ++V++S   D 
Sbjct: 72  DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query: 125 SLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREISDNLG 184
           S+R WDCRS   EP+Q +D   D V SV ++  EI+ GSVDG VR +D+R+G+  SD +G
Sbjct: 132 SIRCWDCRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDYVG 191

Query: 185 QPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNNDAHVT 244
            P+ C   S D  C L S LDSTLRLLD+ +GELL EYKGH  + YKLDCCL+  D HV 
Sbjct: 192 SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTHVV 251

Query: 245 GGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
             SEDG ++FWDLV+ ++  +    S VV   +++
Sbjct: 252 SCSEDGKVFFWDLVEGALALALPVGSGVVQSLAYH 286

[Close]

BLAST of MS011316 vs. ExPASy Swiss-Prot
Match: Q5BLX8 (WD repeat domain-containing protein 83 OS=Rattus norvegicus OX=10116 GN=Wdr83 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.1e-84
Identity = 144/275 (52.36%), Postives = 188/275 (68.36%), Query Frame = 0


Query: 5   ELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
           ELP K+   L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct: 12  ELPRKQLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query: 65  DVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQ 124
           D   + DNS LCS GGD+ V  WDVATG+V+RKFRGH G+VN V+FNE ++V++S   D 
Sbjct: 72  DAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query: 125 SLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREISDNLG 184
           S+R WDCRS   EP+Q +D   D + SV ++  EI+ GSVDG VR +D+R+G+  SD +G
Sbjct: 132 SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVTSDYVG 191

Query: 185 QPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNNDAHVT 244
            P+ C   S D  C L S LDSTLRLLD+ +GELL EY GH  + YKLDCCL+  D HV 
Sbjct: 192 SPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQKYKLDCCLSERDTHVV 251

Query: 245 GGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
             SEDG ++FWDLV+ S+  +    S+VV   +++
Sbjct: 252 SCSEDGKVFFWDLVEGSLALALPVGSNVVQSLAYH 286

[Close]

BLAST of MS011316 vs. ExPASy Swiss-Prot
Match: Q3KQ62 (WD repeat domain-containing protein 83 OS=Xenopus laevis OX=8355 GN=wdr83 PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.1e-84
Identity = 144/275 (52.36%), Postives = 190/275 (69.09%), Query Frame = 0


Query: 5   ELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
           ELP K  + L+ ++GAV A RFN DGNYC++CG D++++LWNPH+G  +KTY  HG EV 
Sbjct: 12  ELPQKLQHKLECNQGAVRAVRFNVDGNYCMTCGSDKSLKLWNPHKGSLLKTYSGHGYEVL 71

Query: 65  DVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQ 124
           D   + DNS+LCSC  D+ V  WDVA G+V+RKFRGH G+VN V+FNE ++V++S   D 
Sbjct: 72  DTAGSCDNSQLCSCSSDKTVILWDVAQGQVVRKFRGHAGKVNCVQFNEEATVIISGSIDS 131

Query: 125 SLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREISDNLG 184
           S+R WDCRS   + IQI+D   D + SV ++  EI+ GSVDG +R +D+R G   +D LG
Sbjct: 132 SIRCWDCRSRRPDAIQIMDEAKDGISSVKVSAHEILAGSVDGNLRRYDLRKGEMCADYLG 191

Query: 185 QPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNNDAHVT 244
            P+ C+S S D+ C+LAS LDSTLRLLD+ +GELL EY GH   SYKLD CL+  D HV 
Sbjct: 192 SPITCVSFSQDSQCLLASSLDSTLRLLDKDTGELLGEYTGHQNLSYKLDSCLSEKDTHVL 251

Query: 245 GGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
             SEDG + FWDLV+ S+V       +VV   SF+
Sbjct: 252 SCSEDGTVCFWDLVEGSLVLKLPVGKAVVQSLSFH 286

[Close]

BLAST of MS011316 vs. ExPASy Swiss-Prot
Match: Q9DAJ4 (WD repeat domain-containing protein 83 OS=Mus musculus OX=10090 GN=Wdr83 PE=1 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.2e-83
Identity = 143/275 (52.00%), Postives = 187/275 (68.00%), Query Frame = 0


Query: 5   ELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
           ELP K    L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct: 12  ELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query: 65  DVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQ 124
           D   + DNS LCS GGD+ V  WDVATG+V+RKFRGH G+VN V+FNE ++V++S   D 
Sbjct: 72  DAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query: 125 SLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREISDNLG 184
           S+R WDCRS   EP+Q +D   D + SV ++  EI+ GSVDG VR +D+R+G+  SD +G
Sbjct: 132 SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVSSDYVG 191

Query: 185 QPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNNDAHVT 244
            P+ C   S D  C L S LDSTLRLLD+ +GELL EY GH  + YKLDCCL+  D HV 
Sbjct: 192 SPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCCLSERDTHVV 251

Query: 245 GGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
             SEDG ++FWDLV+ ++  +    S+VV   +++
Sbjct: 252 SCSEDGKVFFWDLVEGALALALPVGSNVVQSLAYH 286

[Close]

BLAST of MS011316 vs. ExPASy TrEMBL
Match: A0A6J1BWH4 (WD repeat domain-containing protein 83 OS=Momordica charantia OX=3673 GN=LOC111005960 PE=4 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 9.7e-158
Identity = 272/279 (97.49%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVT DNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA
Sbjct: 61  REVRDVHVTLDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANCILASCLDSTLRLLDR SGELLQEYKGHTCKSYKLDCCLTNND
Sbjct: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRYSGELLQEYKGHTCKSYKLDCCLTNND 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVV+  S++
Sbjct: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVTSVSYH 279

[Close]

BLAST of MS011316 vs. ExPASy TrEMBL
Match: A0A5D3CQ40 (WD repeat domain-containing protein 83 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00140 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 2.8e-157
Identity = 267/277 (96.39%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKE+NVLKGHEG VLAARFN+DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKESNVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVTPDNSKLCSCGGDRQVFYWDV+TGRVIRKFRGHDGEVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFD+RIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTN D
Sbjct: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYS 278
           AHVTGGSEDG++YFWDLVDASVVS FRAHSSVVSLYS
Sbjct: 241 AHVTGGSEDGFVYFWDLVDASVVSKFRAHSSVVSLYS 277

[Close]

BLAST of MS011316 vs. ExPASy TrEMBL
Match: A0A6J1GD83 (WD repeat domain-containing protein 83 OS=Cucurbita moschata OX=3662 GN=LOC111452952 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 1.8e-156
Identity = 266/279 (95.34%), Postives = 274/279 (98.21%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKEANVLKGHEG VLAARFN+DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKEANVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVTPDNSKLCSCGGDRQVFYWDV+TGRVIRKFRGHDGEVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFD+RIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANC+LASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTN D
Sbjct: 181 DNLGQPVNCISMSNDANCVLASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           AHVTGGSEDGYIYFWDLVDASVVS FRAHSSVV+  S++
Sbjct: 241 AHVTGGSEDGYIYFWDLVDASVVSKFRAHSSVVTSVSYH 279

[Close]

BLAST of MS011316 vs. ExPASy TrEMBL
Match: A0A1S3B1Y9 (WD repeat domain-containing protein 83 OS=Cucumis melo OX=3656 GN=LOC103485242 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155
Identity = 264/279 (94.62%), Postives = 274/279 (98.21%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKE+NVLKGHEG VLAARFN+DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKESNVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVTPDNSKLCSCGGDRQVFYWDV+TGRVIRKFRGHDGEVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFD+RIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTN D
Sbjct: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           AHVTGGSEDG++YFWDLVDASVVS FRAHSSVV+  S++
Sbjct: 241 AHVTGGSEDGFVYFWDLVDASVVSKFRAHSSVVTSVSYH 279

[Close]

BLAST of MS011316 vs. ExPASy TrEMBL
Match: A0A6J1IRS5 (WD repeat domain-containing protein 83 OS=Cucurbita maxima OX=3661 GN=LOC111478130 PE=4 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 2.0e-155
Identity = 265/279 (94.98%), Postives = 273/279 (97.85%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVSELPTKEANVLKGHEG VLAARFN+DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKEANVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVTPDNSKLCSCGGDRQVFYWDV+TGRVIRKFRGHDGEVNAVKFNE +SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNESASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFD+RIGREIS
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCISMSNDANC+LASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTN D
Sbjct: 181 DNLGQPVNCISMSNDANCVLASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           AHVTGGSEDGYIYFWDLVDASVVS FRAHSSVV+  S++
Sbjct: 241 AHVTGGSEDGYIYFWDLVDASVVSKFRAHSSVVTSVSYH 279

[Close]

BLAST of MS011316 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 489.2 bits (1258), Expect = 2.2e-138
Identity = 227/279 (81.36%), Postives = 254/279 (91.04%), Query Frame = 0


Query: 1   MSVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MS +ELPTKEA++LKGHEGAVLAARFN DGNY L+CGKDRTIRLWNPHRGI IKTYKSHG
Sbjct: 1   MSATELPTKEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHG 60

Query: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSA 120
           REVRDVHVT DN+K CSCGGDRQV+YWDV+TGRVIRKFRGHDGEVNAVKFN+ SSVVVSA
Sbjct: 61  REVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDIRIGREIS 180
           G+D+SLR WDCRSHS EP+QIIDTF D+VMSV LTK+EIIGGSVDGTVRTFD+RIGRE+S
Sbjct: 121 GFDRSLRVWDCRSHSVEPVQIIDTFLDTVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMS 180

Query: 181 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNND 240
           DNLGQPVNCIS+SND NC+LA CLDSTLRLLDR++GELLQ YKGH  KS+K DCCLTN+D
Sbjct: 181 DNLGQPVNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDCCLTNSD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           AHV GGSEDG ++FWDLVDA V+S FRAH  VV+  S++
Sbjct: 241 AHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYH 279

[Close]

BLAST of MS011316 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 135.6 bits (340), Expect = 6.2e-32
Identity = 77/274 (28.10%), Postives = 136/274 (49.64%), Query Frame = 0


Query: 7   PTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDV 66
           P +    L+GH  A+   +F+ DGN   S   D+T+ LW+      I  Y+ H   + D+
Sbjct: 32  PYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEGHSSGISDL 91

Query: 67  HVTPDNSKLCSCGGDRQVFYWDVATG-RVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQS 126
             + D+   CS   D  +  WD  +    ++  RGH   V  V FN  S+++VS  +D++
Sbjct: 92  AWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDET 151

Query: 127 LRAWDCRSHSTEPIQIIDTFSDSVMSVCLTK--SEIIGGSVDGTVRTFDIRIG---REIS 186
           +R W+ ++     +++I   S  + SV   +  S I+  S DG+ + +D + G   + + 
Sbjct: 152 IRIWEVKTGKC--VRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLI 211

Query: 187 DNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLT-NN 246
           D+    V+    S +   IL + LDSTL+L + ++G+ L+ Y GHT K + +    +  N
Sbjct: 212 DDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTN 271

Query: 247 DAHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVV 274
             ++  GSED  +Y WDL   +++     H+  V
Sbjct: 272 GKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAV 303

[Close]

BLAST of MS011316 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 6.9e-31
Identity = 79/283 (27.92%), Postives = 132/283 (46.64%), Query Frame = 0


Query: 2   SVSELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLW-----NPHRGIHIKTY 61
           + S  P   +  L  H  AV + +F++DG    S   D+TIR +     N      ++ +
Sbjct: 8   TASFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEF 67

Query: 62  KSHGREVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSV 121
             H   + DV  + D   + S   D+ +  WDV TG +I+   GH      V FN  S++
Sbjct: 68  TGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNM 127

Query: 122 VVSAGYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTK--SEIIGGSVDGTVRTFDIR 181
           +VS  +D+++R WD  +     ++++   SD V +V   +  S I+  S DG  R +D  
Sbjct: 128 IVSGSFDETVRIWDVTTGKC--LKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSG 187

Query: 182 IG---REISDNLGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYK 241
            G   + + D+   PV+ +  S +   IL   LD+TLRL + SS + L+ Y GH    Y 
Sbjct: 188 TGHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYC 247

Query: 242 LDCCLT-NNDAHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVV 274
           +    +  N   +  GSED  ++ W+L    ++     H+  V
Sbjct: 248 ISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETV 288

[Close]

BLAST of MS011316 vs. TAIR 10
Match: AT5G50230.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30
Identity = 80/284 (28.17%), Postives = 146/284 (51.41%), Query Frame = 0


Query: 4   SELPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREV 63
           S +P+  AN +  HEG   +  F  +     + G+DR +++W+ + G  IK+       +
Sbjct: 211 STIPSTCANRIHAHEGGCGSIVFEYNSGTLFTGGQDRAVKMWDTNSGTLIKSLYGSLGNI 270

Query: 64  RDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSS-VVVSAGY 123
            D+ VT DN  + +      +F WDV++GRV     GH  +V AV  +++SS  VVSA Y
Sbjct: 271 LDMAVTHDNKSVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAY 330

Query: 124 DQSLRAWDC-RSHSTEPIQIIDTFSDSVMSVCLTKS--EIIGGSVDGTVRTFDIRIGREI 183
           D++++ WD  + + T  +     F+ +  ++CL+     +  G +DG +R +DI+ G+ +
Sbjct: 331 DRTIKLWDLHKGYCTNTV----LFTSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLL 390

Query: 184 SDNLG--QPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYK--GHTCKSYKLDCC 243
           S+  G    V  +S+S + N IL S  D+   + D  + E+    +  G+   S     C
Sbjct: 391 SEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLASNWSRSC 450

Query: 244 LTNNDAHVTGGSEDGYIYFWDLVDASVVSSFRAHSSVVSLYSFN 280
           ++ +D +V  GS DG ++ W L   ++VS  +  +S +   S++
Sbjct: 451 ISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQTSPILCCSWS 490

[Close]

BLAST of MS011316 vs. TAIR 10
Match: AT4G15900.1 (pleiotropic regulatory locus 1 )

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-22
Identity = 66/254 (25.98%), Postives = 120/254 (47.24%), Query Frame = 0


Query: 7   PTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDV 66
           P K   V++GH G V +  F+    +  +   DRTI++W+   G+   T   H  +VR +
Sbjct: 165 PWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGL 224

Query: 67  HVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQSL 126
            V+  ++ + S G D+QV  WD+   +VIR + GH   V  +  +    V+++ G D   
Sbjct: 225 AVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVC 284

Query: 127 RAWDCRSHSTEPIQIIDTFSDSVMSVCL--TKSEIIGGSVDGTVRTFDIRIGREIS--DN 186
           R WD R+     I  +    ++V SV    T  +++ GS D T++ +D+R G+ +S   +
Sbjct: 285 RVWDIRTKM--QIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTH 344

Query: 187 LGQPVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNNDAH 246
             + V  +++    N   ++  D+T +      GE          +   ++    N D  
Sbjct: 345 HKKSVRAMTLHPKENAFASASADNT-KKFSLPKGEFCHNMLSQ--QKTIINAMAVNEDGV 404

Query: 247 VTGGSEDGYIYFWD 257
           +  G ++G I+FWD
Sbjct: 405 MVTGGDNGSIWFWD 413

The following BLAST results are available for this feature:

BLAST of MS011316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133372.1	2.0e-157	97.49	WD repeat domain-containing protein 83 [Momordica charantia]	[more]
KAA0025565.1	5.8e-157	96.39	WD repeat domain-containing protein 83 [Cucumis melo var. makuwa] >TYK12439.1 WD...	[more]
XP_022949610.1	3.8e-156	95.34	WD repeat domain-containing protein 83 [Cucurbita moschata] >XP_023543192.1 WD r...	[more]
KAG6604265.1	8.4e-156	97.08	WD repeat domain-containing protein 83, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_008440996.1	2.4e-155	94.62	PREDICTED: WD repeat domain-containing protein 83 [Cucumis melo]	[more]

BLAST of MS011316 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XGI5	1.8e-84	52.00	WD repeat domain-containing protein 83 OS=Xenopus tropicalis OX=8364 GN=wdr83 PE...	[more]
Q9BRX9	3.1e-84	52.36	WD repeat domain-containing protein 83 OS=Homo sapiens OX=9606 GN=WDR83 PE=1 SV=...	[more]
Q5BLX8	3.1e-84	52.36	WD repeat domain-containing protein 83 OS=Rattus norvegicus OX=10116 GN=Wdr83 PE...	[more]
Q3KQ62	3.1e-84	52.36	WD repeat domain-containing protein 83 OS=Xenopus laevis OX=8355 GN=wdr83 PE=2 S...	[more]
Q9DAJ4	1.2e-83	52.00	WD repeat domain-containing protein 83 OS=Mus musculus OX=10090 GN=Wdr83 PE=1 SV...	[more]

BLAST of MS011316 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWH4	9.7e-158	97.49	WD repeat domain-containing protein 83 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3CQ40	2.8e-157	96.39	WD repeat domain-containing protein 83 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1GD83	1.8e-156	95.34	WD repeat domain-containing protein 83 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A1S3B1Y9	1.2e-155	94.62	WD repeat domain-containing protein 83 OS=Cucumis melo OX=3656 GN=LOC103485242 P...	[more]
A0A6J1IRS5	2.0e-155	94.98	WD repeat domain-containing protein 83 OS=Cucurbita maxima OX=3661 GN=LOC1114781...	[more]

BLAST of MS011316 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64730.1	2.2e-138	81.36	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G02730.1	6.2e-32	28.10	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	6.9e-31	27.92	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G50230.1	1.2e-30	28.17	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G15900.1	1.5e-22	25.98	pleiotropic regulatory locus 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 135..172 e-value: 0.61 score: 18.4 coord: 7..46 e-value: 1.4E-9 score: 47.9 coord: 49..88 e-value: 1.0E-5 score: 35.0 coord: 215..256 e-value: 0.23 score: 20.5 coord: 176..212 e-value: 5.6 score: 12.3 coord: 91..130 e-value: 7.7E-8 score: 42.0
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 216..256 e-value: 0.0037 score: 18.1 coord: 13..46 e-value: 1.0E-6 score: 29.3 coord: 52..88 e-value: 0.0025 score: 18.6 coord: 93..130 e-value: 2.0E-5 score: 25.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 56..97 score: 12.17936
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 14..55 score: 13.68318
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 98..130 score: 13.883689
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 3..279 e-value: 4.5E-68 score: 231.3
None	No IPR available	PANTHER	PTHR22842	WD40 REPEAT PROTEIN	coord: 6..264
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 98..130 score: 11.497408
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 14..46 score: 11.286501
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 56..93 score: 9.177421
None	No IPR available	CDD	cd00200	WD40	coord: 13..275 e-value: 5.6319E-58 score: 185.231
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 6..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011316.1	MS011316.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding