MS011301 (gene) Bitter gourd (TR) v1

Overview


Name	MS011301
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold239: 747984 .. 748243 (+)
RNA-Seq Expression	MS011301
Synteny	MS011301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGAATAATCAAATACAGGAAACACAGCCCAAGGCAGGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAGCGAAAGTTCAACAGTGTCACCGACCCGGCTAAGATTATGGCTCTAATGCAATGCAACTTCTCAAGAGTCAATGCTCCACGCCCTTTGATTGCAAATATAAAACAAACCCTCAAAATAAACTTATCCAAGTGCTTTGCATCGAGCTCAACTCAAGCCCAATGGAGGAAGATCAGCCTC

mRNA sequence

AAAGGAATAATCAAATACAGGAAACACAGCCCAAGGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAAAGTTCAACAGTGTCACCGACCCGGCTAAGATTATGGCTCTAATGCAATGCAACTTCTCAAGAGTCAATGCTCCACGCCCTTTGATTGCAAATATAAAACAAACCCTCAAAATAAACTTATCCAAGTGCTTTGCATCGAGCTCAACTCAAGCCCAATGGAGGAAGATCAGCCTC

Coding sequence (CDS)

AAAGGAATAATCAAATACAGGAAACACAGCCCAAGGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAAAGTTCAACAGTGTCACCGACCCGGCTAAGATTATGGCTCTAATGCAATGCAACTTCTCAAGAGTCAATGCTCCACGCCCTTTGATTGCAAATATAAAACAAACCCTCAAAATAAACTTATCCAAGTGCTTTGCATCGAGCTCAACTCAAGCCCAATGGAGGAAGATCAGCCTC

Protein sequence

KGIIKYRKHSPRQGSKAIPRDHRKATKFNSVTDPAKIMALMQCNFSRVNAPRPLIANIKQTLKINLSKCFASSSTQAQWRKISL

Homology

[Close]

BLAST of MS011301 vs. NCBI nr
Match: KGN48371.1 (hypothetical protein Csa_002960 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-07
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 2  GIIKYRKHSPR-QGSKAIPRDHRKAT-KFNSVTDPAKIMA 40
          GIIKYR H+PR QGSKAIPRDHRKAT KFNSVTDPAK MA
Sbjct: 2  GIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMA 41

[Close]

BLAST of MS011301 vs. ExPASy TrEMBL
Match: A0A0A0KKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483510 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 2  GIIKYRKHSPR-QGSKAIPRDHRKAT-KFNSVTDPAKIMA 40
          GIIKYR H+PR QGSKAIPRDHRKAT KFNSVTDPAK MA
Sbjct: 2  GIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMA 41

The following BLAST results are available for this feature:

BLAST of MS011301 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48371.1	4.4e-07	87.50	hypothetical protein Csa_002960 [Cucumis sativus]	[more]

BLAST of MS011301 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKU3	2.1e-07	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483510 PE=4 SV=1	[more]

BLAST of MS011301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011301.1	MS011301.1	mRNA