MS011287 (gene) Bitter gourd (TR) v1

Overview


Name	MS011287
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold239: 640343 .. 640699 (+)
RNA-Seq Expression	MS011287
Synteny	MS011287

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTAAGTACAGAGGGCACTGGAAGCAACGGCGAGTTTGGTCTGTCTTCTCCACTGAAAACTGGAATTACTATGTACAGGGTATGCTTTTTGGGTAACGGGCGGGAAGCTGAATCTGCTCTCCCTGGAAGCAGCCACAAGTTATGCACTAAATCAAATGAGAAAATTGAAAACGGGTACTGCTTCAGCCGTTGATCAGACTGCAGTACTTTGTATCGGCTTATAAGATCACTGGTTTGCCTCGTTTGAGCAAAACAGGGGGCCATGCAGCTATAGGAAAGAATCTATTATGACATCCAGGGAAACTTTGAAGCCACCCAACAGAAACAAACTAGCCTTAAATTGCTAGTTGAT

mRNA sequence

ATGTCATTAAGTACAGAGGGCACTGGAAGCAACGGCGAGTTTGGTCTGTCTTCTCCACTGAAAACTGGAATTACTATGTACAGGGTATGCTTTTTGGGTAACGGGCGGGAAGCTGAATCTGCTCTCCCTGGAAGCAGCCACAAGTTATGCACTAAATCAAATGAGAAAATTGAAAACGTACTGCTTCAGCCGTTGATCAGACTGCAGTACTTTGTATCGGCTTATAAGATCACTGGTTTGCCTCGTTTGAGCAAAACAGGGGGCCATGCAGCTAGGAAAGAATCTATTATGACATCCAGGGAAACTTTGAAGCCACCCCAGAAACAAACTAGCCTTAAATTGCTAGTTGAT

Coding sequence (CDS)

ATGTCATTAAGTACAGAGGGCACTGGAAGCAACGGCGAGTTTGGTCTGTCTTCTCCACTGAAAACTGGAATTACTATGTACAGGGTATGCTTTTTGGGTAACGGGCGGGAAGCTGAATCTGCTCTCCCTGGAAGCAGCCACAAGTTATGCACTAAATCAAATGAGAAAATTGAAAACGTACTGCTTCAGCCGTTGATCAGACTGCAGTACTTTGTATCGGCTTATAAGATCACTGGTTTGCCTCGTTTGAGCAAAACAGGGGGCCATGCAGCTAGGAAAGAATCTATTATGACATCCAGGGAAACTTTGAAGCCACCCCAGAAACAAACTAGCCTTAAATTGCTAGTTGAT

Protein sequence

MSLSTEGTGSNGEFGLSSPLKTGITMYRVCFLGNGREAESALPGSSHKLCTKSNEKIENVLLQPLIRLQYFVSAYKITGLPRLSKTGGHAARKESIMTSRETLKPPQKQTSLKLLVD

Homology

[Close]

BLAST of MS011287 vs. NCBI nr
Match: KGN48356.1 (hypothetical protein Csa_003550 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 70/120 (58.33%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSLSTEGTGSNGEF-GLSSPLKTGITMYRVCFLGNGREAESALPGSSHKLCTKSNEKIE- 60
           MSLS  GTGSN     LSSPLKT I +YRV F G  +   + LP  +  LCTKSNEK+E 
Sbjct: 1   MSLSAGGTGSNRRVQSLSSPLKTTIIIYRVWFYGM-KGKLNLLPQQAAMLCTKSNEKVEK 60

Query: 61  NVLLQPLIRLQYFVSAYKIT-GLPRLSKTGGHAARKESIMTSRETLKPP-QKQTSLKLLV 117
           ++L  PLI  QYF SA KIT  L    K       KESI+TSRETLKPP QKQTSLKLLV
Sbjct: 61  SILFWPLISQQYFPSANKITDSLRSCRKNRLRTNSKESILTSRETLKPPEQKQTSLKLLV 119

[Close]

BLAST of MS011287 vs. ExPASy TrEMBL
Match: A0A0A0KKS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483380 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.2e-18
Identity = 70/120 (58.33%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSLSTEGTGSNGEF-GLSSPLKTGITMYRVCFLGNGREAESALPGSSHKLCTKSNEKIE- 60
           MSLS  GTGSN     LSSPLKT I +YRV F G  +   + LP  +  LCTKSNEK+E 
Sbjct: 1   MSLSAGGTGSNRRVQSLSSPLKTTIIIYRVWFYGM-KGKLNLLPQQAAMLCTKSNEKVEK 60

Query: 61  NVLLQPLIRLQYFVSAYKIT-GLPRLSKTGGHAARKESIMTSRETLKPP-QKQTSLKLLV 117
           ++L  PLI  QYF SA KIT  L    K       KESI+TSRETLKPP QKQTSLKLLV
Sbjct: 61  SILFWPLISQQYFPSANKITDSLRSCRKNRLRTNSKESILTSRETLKPPEQKQTSLKLLV 119

The following BLAST results are available for this feature:

BLAST of MS011287 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48356.1	1.7e-17	58.33	hypothetical protein Csa_003550 [Cucumis sativus]	[more]

BLAST of MS011287 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011287 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKS8	8.2e-18	58.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483380 PE=4 SV=1	[more]

BLAST of MS011287 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011287.1	MS011287.1	mRNA