MS011226 (gene) Bitter gourd (TR) v1

Overview


Name	MS011226
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold239: 256848 .. 256994 (+)
RNA-Seq Expression	MS011226
Synteny	MS011226

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCATACTAAAGGATTTGGTTCCATAACCATGGGTTCAAATGTACGAGATCTTGTAACACTTACTAATGAGACTCTCTCGATTAGTATTATTCAGAAAAAAGAAAGGAGAGACAACACTAATCTCACTCGACCTGCTCTTCAT

mRNA sequence

ATGTTTCATACTAAAGGATTTGGTTCCATAACCATGGGTTCAAATGTACGAGATCTTGTAACACTTACTAATGAGACTCTCTCGATTAGTATTATTCAGAAAAAAGAAAGGAGAGACAACACTAATCTCACTCGACCTGCTCTTCAT

Coding sequence (CDS)

ATGTTTCATACTAAAGGATTTGGTTCCATAACCATGGGTTCAAATGTACGAGATCTTGTAACACTTACTAATGAGACTCTCTCGATTAGTATTATTCAGAAAAAAGAAAGGAGAGACAACACTAATCTCACTCGACCTGCTCTTCAT

Protein sequence

MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH

Homology

[Close]

BLAST of MS011226 vs. NCBI nr
Match: YP_009175801.1 (hypothetical chloroplast RF21 [Astragalus mongholicus var. nakaianus] >ALH42734.1 hypothetical chloroplast RF21 [Astragalus mongholicus var. nakaianus])

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Sbjct: 1466 MFHTKGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNIIRSALH 1513

[Close]

BLAST of MS011226 vs. NCBI nr
Match: YP_009760410.1 (Ycf2 [Astragalus gummifer] >QIQ57213.1 Ycf2 [Astragalus gummifer])

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Sbjct: 1464 MFHTKGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNIIRSALH 1511

[Close]

BLAST of MS011226 vs. NCBI nr
Match: ANK78958.1 (Ycf2 [Astragalus membranaceus var. membranaceus])

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Sbjct: 1464 MFHTKGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNIIRSALH 1511

[Close]

BLAST of MS011226 vs. NCBI nr
Match: YP_009242995.1 (Ycf2 [Astragalus mongholicus] >AMQ99258.1 Ycf2 [Astragalus mongholicus] >QTK20889.1 Ycf2 [Astragalus mongholicus])

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Sbjct: 1464 MFHTKGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNIIRSALH 1511

[Close]

BLAST of MS011226 vs. NCBI nr
Match: AEK71423.1 (hypothetical chloroplast RF2 [Albizia julibrissin])

HSP 1 Score: 72.8 bits (177), Expect = 9.3e-10
Identity = 40/49 (81.63%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GFGSITMGSNVRDLV LTNE LSISIIQKK   D TNL R ALH
Sbjct: 1798 MFHTNGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNLIRSALH 1845

[Close]

BLAST of MS011226 vs. ExPASy Swiss-Prot
Match: Q9B1K6 (Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.9e-12
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GFGSIT+GSNV+DLV LTNE LSISIIQKK   D TNL R ALH
Sbjct: 1840 MFHTNGFGSITLGSNVQDLVALTNEALSISIIQKKSIID-TNLIRSALH 1887

[Close]

BLAST of MS011226 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.9e-12
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GFGSITMGSNVRDLV LTNE LSISI QKK   D TN+ R ALH
Sbjct: 1847 MFHTNGFGSITMGSNVRDLVALTNEALSISITQKKSIID-TNIIRSALH 1894

[Close]

BLAST of MS011226 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-11
Identity = 38/49 (77.55%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GFGSITMGSNVRDLV LTNE LSISI QKK   D TN  R ALH
Sbjct: 1827 MFHTNGFGSITMGSNVRDLVALTNEALSISITQKKSILD-TNTIRSALH 1874

[Close]

BLAST of MS011226 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-11
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GFGSITMGSNVRDLV LTNE LSISI Q+K   D TN+ R ALH
Sbjct: 1535 MFHTNGFGSITMGSNVRDLVALTNEALSISITQRKSIID-TNIIRSALH 1582

[Close]

BLAST of MS011226 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-11
Identity = 37/49 (75.51%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GFGSITMGSNVRDLV LTNE LSISI QKK   D TN+ R A H
Sbjct: 1832 MFHTNGFGSITMGSNVRDLVALTNEALSISITQKKSIID-TNIIRSAFH 1879

[Close]

BLAST of MS011226 vs. ExPASy TrEMBL
Match: A0A192ICL4 (Protein Ycf2 OS=Astragalus membranaceus var. membranaceus OX=1862641 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Sbjct: 1464 MFHTKGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNIIRSALH 1511

[Close]

BLAST of MS011226 vs. ExPASy TrEMBL
Match: A0A6G9KW07 (Protein Ycf2 OS=Astragalus gummifer OX=339493 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Sbjct: 1464 MFHTKGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNIIRSALH 1511

[Close]

BLAST of MS011226 vs. ExPASy TrEMBL
Match: A0A0U2L0Y4 (Protein Ycf2 OS=Astragalus mongholicus var. nakaianus OX=1235665 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Sbjct: 1466 MFHTKGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNIIRSALH 1513

[Close]

BLAST of MS011226 vs. ExPASy TrEMBL
Match: A0A142G669 (Protein Ycf2 OS=Astragalus mongholicus OX=119829 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHTKGFGSITMGSNVRDLV LTNE LSISIIQKK   D TN+ R ALH
Sbjct: 1464 MFHTKGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNIIRSALH 1511

[Close]

BLAST of MS011226 vs. ExPASy TrEMBL
Match: A0A6H0EEA3 (Protein Ycf2 OS=Erythrophleum suaveolens OX=162772 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-10
Identity = 40/49 (81.63%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GFGSITMGSNVRDLV LTNE LSISIIQKK   D TNL R ALH
Sbjct: 1827 MFHTNGFGSITMGSNVRDLVALTNEALSISIIQKKSIID-TNLIRSALH 1874

[Close]

BLAST of MS011226 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-10
Identity = 35/49 (71.43%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GF SITMGS+ RDLV LTNE LSISI QKK   D TN  R ALH
Sbjct: 1841 MFHTNGFESITMGSSARDLVALTNEALSISITQKKSIID-TNTIRSALH 1888

[Close]

BLAST of MS011226 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-10
Identity = 35/49 (71.43%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 1    MFHTKGFGSITMGSNVRDLVTLTNETLSISIIQKKERRDNTNLTRPALH 50
            MFHT GF SITMGS+ RDLV LTNE LSISI QKK   D TN  R ALH
Sbjct: 1841 MFHTNGFESITMGSSARDLVALTNEALSISITQKKSIID-TNTIRSALH 1888

The following BLAST results are available for this feature:

BLAST of MS011226 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009175801.1	4.2e-10	81.63	hypothetical chloroplast RF21 [Astragalus mongholicus var. nakaianus] >ALH42734....	[more]
YP_009760410.1	4.2e-10	81.63	Ycf2 [Astragalus gummifer] >QIQ57213.1 Ycf2 [Astragalus gummifer]	[more]
ANK78958.1	4.2e-10	81.63	Ycf2 [Astragalus membranaceus var. membranaceus]	[more]
YP_009242995.1	4.2e-10	81.63	Ycf2 [Astragalus mongholicus] >AMQ99258.1 Ycf2 [Astragalus mongholicus] >QTK2088...	[more]
AEK71423.1	9.3e-10	81.63	hypothetical chloroplast RF2 [Albizia julibrissin]	[more]

BLAST of MS011226 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9B1K6	7.9e-12	77.55	Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1	[more]
B1NWJ3	7.9e-12	77.55	Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1	[more]
Q49KT6	1.4e-11	77.55	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
Q2QD30	1.8e-11	75.51	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
Q09WV7	2.3e-11	75.51	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS011226 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A192ICL4	2.0e-10	81.63	Protein Ycf2 OS=Astragalus membranaceus var. membranaceus OX=1862641 GN=ycf2 PE=...	[more]
A0A6G9KW07	2.0e-10	81.63	Protein Ycf2 OS=Astragalus gummifer OX=339493 GN=ycf2 PE=3 SV=1	[more]
A0A0U2L0Y4	2.0e-10	81.63	Protein Ycf2 OS=Astragalus mongholicus var. nakaianus OX=1235665 GN=ycf2 PE=3 SV...	[more]
A0A142G669	2.0e-10	81.63	Protein Ycf2 OS=Astragalus mongholicus OX=119829 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EEA3	4.5e-10	81.63	Protein Ycf2 OS=Erythrophleum suaveolens OX=162772 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS011226 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.2e-10	71.43	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.2e-10	71.43	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..49
None	No IPR available	PANTHER	PTHR33078:SF43	PROTEIN YCF2	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011226.1	MS011226.1	mRNA