MS011000 (gene) Bitter gourd (TR) v1

Overview
NameMS011000
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold35: 3515810 .. 3516046 (+)
RNA-Seq ExpressionMS011000
SyntenyMS011000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGCGATTGCGATTGGCCGGATCAAGAAGACGAAGAAGGGGAGATCCTTCAGCTTCCGGAGGCTAAGAGAGTCGTGGAAGTGGAAATTCCTTCGGGATTTCAAGTGGAAGAGAATGAATCTCCACATTGGTTTCTTGGACGCCATCATCTTCCGAATCGCCTCCCTGTTTGAGGCCATTGCGTTGGTAGGTATCGCCGGCTTCTTCTTCCTCTGTTGTGGCTGCCACTTC

mRNA sequence

ATGGATGATGCGATTGCGATTGGCCGGATCAAGAAGACGAAGAAGGGGAGATCCTTCAGCTTCCGGAGGCTAAGAGAGTCGTGGAAGTGGAAATTCCTTCGGGATTTCAAGTGGAAGAGAATGAATCTCCACATTGGTTTCTTGGACGCCATCATCTTCCGAATCGCCTCCCTGTTTGAGGCCATTGCGTTGGTAGGTATCGCCGGCTTCTTCTTCCTCTGTTGTGGCTGCCACTTC

Coding sequence (CDS)

ATGGATGATGCGATTGCGATTGGCCGGATCAAGAAGACGAAGAAGGGGAGATCCTTCAGCTTCCGGAGGCTAAGAGAGTCGTGGAAGTGGAAATTCCTTCGGGATTTCAAGTGGAAGAGAATGAATCTCCACATTGGTTTCTTGGACGCCATCATCTTCCGAATCGCCTCCCTGTTTGAGGCCATTGCGTTGGTAGGTATCGCCGGCTTCTTCTTCCTCTGTTGTGGCTGCCACTTC

Protein sequence

MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKWKRMNLHIGFLDAIIFRIASLFEAIALVGIAGFFFLCCGCHF
Homology
BLAST of MS011000 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-25
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0

Query: 1  MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKWKRMNLHIGFLDAIIFRIASLFE 60
          MDDAI     KKTKK R+FS +RLR+SWKWKFL+DFKWKR+NLHIGFLDAIIFRIASLFE
Sbjct: 1  MDDAI---DRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFE 60

Query: 61 AIALVGIAGFFFLCC-GCHF 80
          AIAL+GIAGFFFLCC GC F
Sbjct: 61 AIALIGIAGFFFLCCGGCRF 77

BLAST of MS011000 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1  MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKWKRMNLHIGFLDAIIFRIASLFE 60
          MDDAI     KKTKK R+FS +RLR+SWKWKFL+DFKWKR+NLHIGFLDAIIFRIASLFE
Sbjct: 1  MDDAI---DRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFE 60

Query: 61 AIALVGIAGFF 72
          AIAL+GIAGFF
Sbjct: 61 AIALIGIAGFF 68

BLAST of MS011000 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 1  MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKWKRMNLHIGFLDAIIFRIASLFE 60
          MDDAI   + K  KK R FSF+RLR+SWKWKFL++FKWKR+NL +GF DAIIFRI SLFE
Sbjct: 1  MDDAIDRKKTKTMKK-RVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFE 60

Query: 61 AIALVGIAGFFFLCC-GCHF 80
           +ALVGIA FFFLCC GC F
Sbjct: 61 TVALVGIASFFFLCCGGCRF 79

BLAST of MS011000 vs. NCBI nr
Match: XP_023929751.1 (uncharacterized protein LOC112041078 [Quercus suber])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 14 KKGRSFSFRRLR--ESWKWKFLRD-FKWKRMNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          KK R   FRRLR   +W+WKFL   FKWKR+NLH+ F+D ++FRI S+FEAI LV    F
Sbjct: 4  KKNRWIFFRRLRMQTAWRWKFLGSAFKWKRLNLHLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 74 FFLCCGCHF 80
          F+LCCGCHF
Sbjct: 64 FYLCCGCHF 72

BLAST of MS011000 vs. NCBI nr
Match: XP_035544743.1 (uncharacterized protein LOC108990492 [Juglans regia])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 14 KKGRSFSFRRLR-ESWKWKFL--RDFKWKRMNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          KK R  SF++LR ++W+WKF     F+WKR+NL + F+D ++FRIASLFEAI LV    F
Sbjct: 4  KKNRWISFKKLRGQNWRWKFFFGSAFRWKRLNLKLSFVDDLLFRIASLFEAIVLVARLCF 63

Query: 74 FFLCCGCHF 80
          F+LCCGCHF
Sbjct: 64 FYLCCGCHF 72

BLAST of MS011000 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.4e-21
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 1  MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKWKRMNLHIGFLDAIIFRIASLFE 60
          MDDAI   + K  KK R FSF+RLR+SWKWKFL++FKWKR+NL +GF DAIIFRI SLFE
Sbjct: 1  MDDAIDRKKTKTMKK-RVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFE 60

Query: 61 AIALVGIAGFFFLCC-GCHF 80
           +ALVGIA FFFLCC GC F
Sbjct: 61 TVALVGIASFFFLCCGGCRF 79

BLAST of MS011000 vs. ExPASy TrEMBL
Match: A0A6P9EL64 (uncharacterized protein LOC108990492 OS=Juglans regia OX=51240 GN=LOC108990492 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 14 KKGRSFSFRRLR-ESWKWKFL--RDFKWKRMNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          KK R  SF++LR ++W+WKF     F+WKR+NL + F+D ++FRIASLFEAI LV    F
Sbjct: 4  KKNRWISFKKLRGQNWRWKFFFGSAFRWKRLNLKLSFVDDLLFRIASLFEAIVLVARLCF 63

Query: 74 FFLCCGCHF 80
          F+LCCGCHF
Sbjct: 64 FYLCCGCHF 72

BLAST of MS011000 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 14 KKGRSFSFRRLR--ESWKWKFLRD-FKWKRMNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          KK R   F+RLR   +W+WKFL   FKWKR+NL + F+D ++FRI S+FEAI LV    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 74 FFLCCGCHF 80
          F+LCCGCHF
Sbjct: 64 FYLCCGCHF 72

BLAST of MS011000 vs. ExPASy TrEMBL
Match: A0A6J1B6L1 (uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC110424571 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.6e-11
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 21 FRRL--RESWKWKFLRD-FKWKRMNLHIGFLDAIIFRIASLFEAIALVGIAGFFFLCCGC 80
          F+RL  +ESW+WKFL   FKWKR+N+ + F+D ++FRIAS+ EAI LV    FF+LCCGC
Sbjct: 10 FKRLIKKESWRWKFLGSAFKWKRLNIQLSFVDDVLFRIASVLEAIFLVATLCFFYLCCGC 69

BLAST of MS011000 vs. ExPASy TrEMBL
Match: A0A061GEB5 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.6e-11
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 21  FRRL--RESWKWKFLRD-FKWKRMNLHIGFLDAIIFRIASLFEAIALVGIAGFFFLCCGC 80
           F+RL  +ESW+WKFL   FKWKR+N+ + F+D ++FRIAS+ EAI LV    FF+LCCGC
Sbjct: 128 FKRLIKKESWRWKFLGSAFKWKRLNIQLSFVDDVLFRIASVLEAIFLVATLCFFYLCCGC 187

BLAST of MS011000 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-08
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 14 KKGRSFSFRRLRESWKWKFL---RDFKWKRMNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          +KG+   ++  +E  + KFL      KWKR+NL + FL+ + +RI S+ EA+ LV    F
Sbjct: 3  RKGKLSIWKTTKERTRLKFLGLGGGLKWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAF 62

Query: 74 FFLCCGCHF 80
          FFLCCGC F
Sbjct: 63 FFLCCGCKF 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7034699.13.3e-2581.25hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581417.11.3e-2181.69hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49382.11.1e-2071.25hypothetical protein Csa_004198 [Cucumis sativus][more]
XP_023929751.11.1e-1260.87uncharacterized protein LOC112041078 [Quercus suber][more]
XP_035544743.11.2e-1157.97uncharacterized protein LOC108990492 [Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLX95.4e-2171.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1[more]
A0A6P9EL646.0e-1257.97uncharacterized protein LOC108990492 OS=Juglans regia OX=51240 GN=LOC108990492 P... [more]
A0A7N2LSF81.0e-1157.97Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6J1B6L18.6e-1159.68uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
A0A061GEB58.6e-1159.68Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G46295.14.0e-0843.48unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33726:SF3TRANSMEMBRANE PROTEINcoord: 14..79
NoneNo IPR availablePANTHERPTHR33726TRANSMEMBRANE PROTEINcoord: 14..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS011000.1MS011000.1mRNA