MS010836 (gene) Bitter gourd (TR) v1

Overview
NameMS010836
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionctenidin-3-like
Locationscaffold35: 2328339 .. 2328743 (+)
RNA-Seq ExpressionMS010836
SyntenyMS010836
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCACTCCATGGCCATTCCCACTTTTCTCATCGCCCTCCTCCTCCTCTCGCCGGCCTACTCTCTCGCCGCCGCCTCTCGGAAGGACGGCGGCTTCGACGGGGTCTTCGGACCCGGTGGCGGCGGGTTCGGCGACATACCCGGATTCGGAAAGGGCTGGGACAGGGGCATCGTCGGCGGGGGATACGGCGGCGGTTACGGCGGCCCCAAAGGCGGGTACGGGAAGGGCGGCATCATAAGGAACTCCGTCGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTCACGTGTCCGGCCAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTACGGCGGCGGCGGCGGCGGCGGCGGCTGCACCATCGACTGCACTAAGAAATGTATCGGCTACTGC

mRNA sequence

ATGATTCACTCCATGGCCATTCCCACTTTTCTCATCGCCCTCCTCCTCCTCTCGCCGGCCTACTCTCTCGCCGCCGCCTCTCGGAAGGACGGCGGCTTCGACGGGGTCTTCGGACCCGGTGGCGGCGGGTTCGGCGACATACCCGGATTCGGAAAGGGCTGGGACAGGGGCATCGTCGGCGGGGGATACGGCGGCGGTTACGGCGGCCCCAAAGGCGGGTACGGGAAGGGCGGCATCATAAGGAACTCCGTCGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTCACGTGTCCGGCCAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTACGGCGGCGGCGGCGGCGGCGGCGGCTGCACCATCGACTGCACTAAGAAATGTATCGGCTACTGC

Coding sequence (CDS)

ATGATTCACTCCATGGCCATTCCCACTTTTCTCATCGCCCTCCTCCTCCTCTCGCCGGCCTACTCTCTCGCCGCCGCCTCTCGGAAGGACGGCGGCTTCGACGGGGTCTTCGGACCCGGTGGCGGCGGGTTCGGCGACATACCCGGATTCGGAAAGGGCTGGGACAGGGGCATCGTCGGCGGGGGATACGGCGGCGGTTACGGCGGCCCCAAAGGCGGGTACGGGAAGGGCGGCATCATAAGGAACTCCGTCGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTCACGTGTCCGGCCAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTACGGCGGCGGCGGCGGCGGCGGCGGCTGCACCATCGACTGCACTAAGAAATGTATCGGCTACTGC

Protein sequence

MIHSMAIPTFLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYGGGYGGPKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTKKCIGYC
Homology
BLAST of MS010836 vs. NCBI nr
Match: XP_004134728.1 (ctenidin-3 [Cucumis sativus] >KGN49190.1 hypothetical protein Csa_003176 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 4.8e-56
Identity = 115/126 (91.27%), Postives = 120/126 (95.24%), Query Frame = 0

Query: 10  FLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYGGGYGG 69
           FLIA+LLLSP+ SLA A RKDGGFDG+FGP G GFGDIPGFGKGWD+GI+GGGYGGGYGG
Sbjct: 10  FLIAILLLSPSISLATA-RKDGGFDGMFGP-GNGFGDIPGFGKGWDKGIIGGGYGGGYGG 69

Query: 70  PKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129
           PKGGYGKGGIIRNSVVCK KGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK
Sbjct: 70  PKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129

Query: 130 KCIGYC 136
           KCIGYC
Sbjct: 130 KCIGYC 133

BLAST of MS010836 vs. NCBI nr
Match: XP_022926656.1 (neuropeptide-like protein 31 [Cucurbita moschata] >KAG6594623.1 hypothetical protein SDJN03_11176, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026592.1 hypothetical protein SDJN02_10594, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.8 bits (569), Expect = 9.0e-55
Identity = 114/136 (83.82%), Postives = 122/136 (89.71%), Query Frame = 0

Query: 1   MIHSMAIPTFLIALLLLSPAYSLAAASRK-DGGFDGVFGPGGGGFGDIPGFGKGWDRGIV 60
           M   MAI T L+A+LLLSPA+SLA A     GGFDG+FGP G GF DIPGFGKGWD+GI+
Sbjct: 1   MNRHMAISTLLVAVLLLSPAFSLATARNSGGGGFDGMFGP-GNGFDDIPGFGKGWDKGII 60

Query: 61  GGGYGGGYGGPKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGG 120
           GGGYGGGYGGPKGGYGKGGIIRN+VVCKEKGPCYNKKVTCPAKCFSSYSRSGKG+GGGGG
Sbjct: 61  GGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGG 120

Query: 121 GGGCTIDCTKKCIGYC 136
           GGGCTIDCTKKCIGYC
Sbjct: 121 GGGCTIDCTKKCIGYC 135

BLAST of MS010836 vs. NCBI nr
Match: XP_023517828.1 (cold shock domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 112/136 (82.35%), Postives = 120/136 (88.24%), Query Frame = 0

Query: 1   MIHSMAIPTFLIALLLLSPAYSLAAASRK-DGGFDGVFGPGGGGFGDIPGFGKGWDRGIV 60
           M   MAI   L+A+LLLSP +SLA A     GGFDG+FGP G GF DIPGFGKGWD+GI+
Sbjct: 39  MNRHMAISALLVAVLLLSPPFSLATARNSGGGGFDGMFGP-GNGFDDIPGFGKGWDKGII 98

Query: 61  GGGYGGGYGGPKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGG 120
           GGGYGGGYGGPKGGYGKGGIIRN+VVCKEKGPCYNKKVTCPAKCFSSYSRSGKG+GGGGG
Sbjct: 99  GGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGG 158

Query: 121 GGGCTIDCTKKCIGYC 136
           GGGCTIDCTKKCIGYC
Sbjct: 159 GGGCTIDCTKKCIGYC 173

BLAST of MS010836 vs. NCBI nr
Match: XP_008439905.1 (PREDICTED: ctenidin-3-like [Cucumis melo] >KAA0052719.1 ctenidin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 5.0e-53
Identity = 111/126 (88.10%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 10  FLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYGGGYGG 69
           FLIA+LLLSP+ SL A SRKDGGF G+FGP G GF DIPGFGKGWD+GIVGGGYGGGYGG
Sbjct: 10  FLIAILLLSPSLSL-ATSRKDGGFGGMFGP-GNGFDDIPGFGKGWDKGIVGGGYGGGYGG 69

Query: 70  PKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129
           PKGGYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDC K
Sbjct: 70  PKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCAK 129

Query: 130 KCIGYC 136
           KCIGYC
Sbjct: 130 KCIGYC 133

BLAST of MS010836 vs. NCBI nr
Match: TYK13106.1 (ctenidin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 5.0e-53
Identity = 111/126 (88.10%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 10  FLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYGGGYGG 69
           FLIA+LLLSP+ SL A SRKDGGF G+FGP G GF DIPGFGKGWD+GIVGGGYGGGYGG
Sbjct: 10  FLIAILLLSPSLSL-ATSRKDGGFGGMFGP-GNGFDDIPGFGKGWDKGIVGGGYGGGYGG 69

Query: 70  PKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129
           PKGGYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDC K
Sbjct: 70  PKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCAK 129

Query: 130 KCIGYC 136
           KCIGYC
Sbjct: 130 KCIGYC 133

BLAST of MS010836 vs. ExPASy TrEMBL
Match: A0A0A0KHJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516980 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56
Identity = 115/126 (91.27%), Postives = 120/126 (95.24%), Query Frame = 0

Query: 10  FLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYGGGYGG 69
           FLIA+LLLSP+ SLA A RKDGGFDG+FGP G GFGDIPGFGKGWD+GI+GGGYGGGYGG
Sbjct: 10  FLIAILLLSPSISLATA-RKDGGFDGMFGP-GNGFGDIPGFGKGWDKGIIGGGYGGGYGG 69

Query: 70  PKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129
           PKGGYGKGGIIRNSVVCK KGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK
Sbjct: 70  PKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129

Query: 130 KCIGYC 136
           KCIGYC
Sbjct: 130 KCIGYC 133

BLAST of MS010836 vs. ExPASy TrEMBL
Match: A0A6J1EFI3 (neuropeptide-like protein 31 OS=Cucurbita moschata OX=3662 GN=LOC111433724 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.4e-55
Identity = 114/136 (83.82%), Postives = 122/136 (89.71%), Query Frame = 0

Query: 1   MIHSMAIPTFLIALLLLSPAYSLAAASRK-DGGFDGVFGPGGGGFGDIPGFGKGWDRGIV 60
           M   MAI T L+A+LLLSPA+SLA A     GGFDG+FGP G GF DIPGFGKGWD+GI+
Sbjct: 1   MNRHMAISTLLVAVLLLSPAFSLATARNSGGGGFDGMFGP-GNGFDDIPGFGKGWDKGII 60

Query: 61  GGGYGGGYGGPKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGG 120
           GGGYGGGYGGPKGGYGKGGIIRN+VVCKEKGPCYNKKVTCPAKCFSSYSRSGKG+GGGGG
Sbjct: 61  GGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGG 120

Query: 121 GGGCTIDCTKKCIGYC 136
           GGGCTIDCTKKCIGYC
Sbjct: 121 GGGCTIDCTKKCIGYC 135

BLAST of MS010836 vs. ExPASy TrEMBL
Match: A0A5D3CRS6 (Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007150 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 111/126 (88.10%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 10  FLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYGGGYGG 69
           FLIA+LLLSP+ SL A SRKDGGF G+FGP G GF DIPGFGKGWD+GIVGGGYGGGYGG
Sbjct: 10  FLIAILLLSPSLSL-ATSRKDGGFGGMFGP-GNGFDDIPGFGKGWDKGIVGGGYGGGYGG 69

Query: 70  PKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129
           PKGGYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDC K
Sbjct: 70  PKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCAK 129

Query: 130 KCIGYC 136
           KCIGYC
Sbjct: 130 KCIGYC 133

BLAST of MS010836 vs. ExPASy TrEMBL
Match: A0A5A7UGS4 (Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003320 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 111/126 (88.10%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 10  FLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYGGGYGG 69
           FLIA+LLLSP+ SL A SRKDGGF G+FGP G GF DIPGFGKGWD+GIVGGGYGGGYGG
Sbjct: 10  FLIAILLLSPSLSL-ATSRKDGGFGGMFGP-GNGFDDIPGFGKGWDKGIVGGGYGGGYGG 69

Query: 70  PKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129
           PKGGYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDC K
Sbjct: 70  PKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCAK 129

Query: 130 KCIGYC 136
           KCIGYC
Sbjct: 130 KCIGYC 133

BLAST of MS010836 vs. ExPASy TrEMBL
Match: A0A1S3AZW7 (ctenidin-3-like OS=Cucumis melo OX=3656 GN=LOC103484551 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 111/126 (88.10%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 10  FLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYGGGYGG 69
           FLIA+LLLSP+ SL A SRKDGGF G+FGP G GF DIPGFGKGWD+GIVGGGYGGGYGG
Sbjct: 10  FLIAILLLSPSLSL-ATSRKDGGFGGMFGP-GNGFDDIPGFGKGWDKGIVGGGYGGGYGG 69

Query: 70  PKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTK 129
           PKGGYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDC K
Sbjct: 70  PKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCAK 129

Query: 130 KCIGYC 136
           KCIGYC
Sbjct: 130 KCIGYC 133

BLAST of MS010836 vs. TAIR 10
Match: AT4G21620.1 (glycine-rich protein )

HSP 1 Score: 147.9 bits (372), Expect = 5.9e-36
Identity = 79/131 (60.31%), Postives = 95/131 (72.52%), Query Frame = 0

Query: 5   MAIPTFLIALLLLSPAYSLAAASRKDGGFDGVFGPGGGGFGDIPGFGKGWDRGIVGGGYG 64
           M   + L+A LL+    S   ++R+  G DG+   G  G G IPGFG G+    VGGGYG
Sbjct: 1   MFTKSILLASLLIIILVSATESARQKSGNDGLGFGGVPGSGFIPGFGNGFPGTGVGGGYG 60

Query: 65  GGYGGPKGGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCT 124
           GG+GGP GG+GKGG++R +V CKEKGPC  KK+ CPAKCF S+SRSGKGYGGGGGGGGCT
Sbjct: 61  GGFGGPSGGFGKGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCT 120

Query: 125 IDCTKKCIGYC 136
           +DC KKCI YC
Sbjct: 121 MDCKKKCIAYC 131

BLAST of MS010836 vs. TAIR 10
Match: AT4G21620.2 (glycine-rich protein )

HSP 1 Score: 114.8 bits (286), Expect = 5.5e-26
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 0

Query: 72  GGYGKGGIIRNSVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCTKKC 131
           GG+GKGG++R +V CKEKGPC  KK+ CPAKCF S+SRSGKGYGGGGGGGGCT+DC KKC
Sbjct: 35  GGFGKGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKC 94

Query: 132 IGYC 136
           I YC
Sbjct: 95  IAYC 98

BLAST of MS010836 vs. TAIR 10
Match: AT1G61255.1 (BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 56/97 (57.73%), Postives = 63/97 (64.95%), Query Frame = 0

Query: 41  GGGFGDIPGFGKGWDRGIV--GGGYGGGYGGPKGGYGKGGIIRNSVVCKEKGPCYNKKVT 100
           G G G  PG       G +  G G GG Y    GGY KG  +R +V+C+EKG CY KK+T
Sbjct: 50  GYGSGGYPGLTTEPATGFILPGSGPGGSYSELSGGYSKGRGVRLTVMCEEKGHCYMKKLT 109

Query: 101 CPAKCFSSYSRSGKGYGGGGGGGGCTIDCTKKCIGYC 136
           CPAKCF S SR GKGY  GGGGGGCTIDC KKC+ YC
Sbjct: 110 CPAKCFKSLSRKGKGY--GGGGGGCTIDC-KKCVAYC 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004134728.14.8e-5691.27ctenidin-3 [Cucumis sativus] >KGN49190.1 hypothetical protein Csa_003176 [Cucumi... [more]
XP_022926656.19.0e-5583.82neuropeptide-like protein 31 [Cucurbita moschata] >KAG6594623.1 hypothetical pro... [more]
XP_023517828.11.3e-5382.35cold shock domain-containing protein 4-like [Cucurbita pepo subsp. pepo][more]
XP_008439905.15.0e-5388.10PREDICTED: ctenidin-3-like [Cucumis melo] >KAA0052719.1 ctenidin-3-like [Cucumis... [more]
TYK13106.15.0e-5388.10ctenidin-3-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHJ22.3e-5691.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516980 PE=4 SV=1[more]
A0A6J1EFI34.4e-5583.82neuropeptide-like protein 31 OS=Cucurbita moschata OX=3662 GN=LOC111433724 PE=4 ... [more]
A0A5D3CRS62.4e-5388.10Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0071... [more]
A0A5A7UGS42.4e-5388.10Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G0033... [more]
A0A1S3AZW72.4e-5388.10ctenidin-3-like OS=Cucumis melo OX=3656 GN=LOC103484551 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G21620.15.9e-3660.31glycine-rich protein [more]
AT4G21620.25.5e-2676.56glycine-rich protein [more]
AT1G61255.11.1e-1857.73BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34789EXPRESSED PROTEINcoord: 11..135
NoneNo IPR availablePANTHERPTHR34789:SF4SUBFAMILY NOT NAMEDcoord: 11..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010836.1MS010836.1mRNA