MS010833 (gene) Bitter gourd (TR) v1

Overview
NameMS010833
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationscaffold35: 2315933 .. 2316082 (-)
RNA-Seq ExpressionMS010833
SyntenyMS010833
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGGTGAAGGAGCAAGGAGGATGAACGAAATCAACGGTCAGAGATTGGGCAGGAGATTTTCCGGTCGTCTGATCCCGAAGAGAGGGCAGGTGAAGATGGGAATCATGGTGGGCCTGGCCCATACTGTCACCTCCATCTTCTCCCACAGC

mRNA sequence

GGTGGTGAAGGAGCAAGGAGGATGAACGAAATCAACGGTCAGAGATTGGGCAGGAGATTTTCCGGTCGTCTGATCCCGAAGAGAGGGCAGGTGAAGATGGGAATCATGGTGGGCCTGGCCCATACTGTCACCTCCATCTTCTCCCACAGC

Coding sequence (CDS)

GGTGGTGAAGGAGCAAGGAGGATGAACGAAATCAACGGTCAGAGATTGGGCAGGAGATTTTCCGGTCGTCTGATCCCGAAGAGAGGGCAGGTGAAGATGGGAATCATGGTGGGCCTGGCCCATACTGTCACCTCCATCTTCTCCCACAGC

Protein sequence

GGEGARRMNEINGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSHS
Homology
BLAST of MS010833 vs. NCBI nr
Match: KAA0052717.1 (hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa] >TYK13107.1 hypothetical protein E5676_scaffold255G007170 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 2  GEGARRMNEINGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSHS 51
          GE A+ MN INGQRLGRR SGRLIPKRGQVKMGIMVGLA TVTSIFS+S
Sbjct: 2  GEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNS 50

BLAST of MS010833 vs. NCBI nr
Match: KAG7026593.1 (Anaphase-promoting complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 8  MNEINGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSH 50
          MN ING+R+ RR  GR IPKRGQVKMGIMVG+ HTVTSIFSH
Sbjct: 1  MNNINGERICRRIGGRPIPKRGQVKMGIMVGIVHTVTSIFSH 42

BLAST of MS010833 vs. NCBI nr
Match: EEF40912.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 7  RMNEINGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSHS 51
          RM  ++ +++ RR SGR IPKRGQVK+GI+VGLAH+V SIFSHS
Sbjct: 5  RMGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSHS 48

BLAST of MS010833 vs. NCBI nr
Match: KAG6603714.1 (hypothetical protein SDJN03_04323, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 8.3e-06
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 11  INGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSH 50
           ING  L R++S RLIPKRGQV MGI+ G+AH+VTS+FSH
Sbjct: 100 INGGDLSRKYSDRLIPKRGQVTMGILAGIAHSVTSLFSH 138

BLAST of MS010833 vs. NCBI nr
Match: RZC03639.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Glycine soja])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 3   EGARRMNEINGQR-LGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSHS 51
           +GAR    ING R   RRFSGR IPKRGQVK+GI+VGLA++V SIFS S
Sbjct: 396 QGARASGMINGGRSFPRRFSGRPIPKRGQVKVGIVVGLANSVASIFSRS 444

BLAST of MS010833 vs. ExPASy TrEMBL
Match: A0A5A7UDZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007170 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.6e-13
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 2  GEGARRMNEINGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSHS 51
          GE A+ MN INGQRLGRR SGRLIPKRGQVKMGIMVGLA TVTSIFS+S
Sbjct: 2  GEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNS 50

BLAST of MS010833 vs. ExPASy TrEMBL
Match: A0A0A0KLE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517000 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-07
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 7  RMNEINGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSH 50
          R+N IN   L R+ S RLIPKRGQVK+GI+VG+AH+VTSIFSH
Sbjct: 5  RINAINHGNLSRKCSDRLIPKRGQVKLGIIVGIAHSVTSIFSH 47

BLAST of MS010833 vs. ExPASy TrEMBL
Match: B9S603 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1062910 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 7  RMNEINGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSHS 51
          RM  ++ +++ RR SGR IPKRGQVK+GI+VGLAH+V SIFSHS
Sbjct: 5  RMGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSHS 48

BLAST of MS010833 vs. ExPASy TrEMBL
Match: A0A445JYT4 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 GN=D0Y65_018344 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-06
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 3   EGARRMNEINGQR-LGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSHS 51
           +GAR    ING R   RRFSGR IPKRGQVK+GI+VGLA++V SIFS S
Sbjct: 396 QGARASGMINGGRSFPRRFSGRPIPKRGQVKVGIVVGLANSVASIFSRS 444

BLAST of MS010833 vs. ExPASy TrEMBL
Match: A0A0S3QZK4 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G131600 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-06
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 4  GARRMNEINGQRLGRRFSGRLIPKRGQVKMGIMVGLAHTVTSIFSHS 51
          GAR  + ING+ + RRFSGR IPKRGQVK+GI++GLA +V SIFS +
Sbjct: 3  GARAGSMINGRSIPRRFSGRPIPKRGQVKVGIVLGLASSVASIFSRN 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0052717.11.6e-1285.71hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa] >TYK131... [more]
KAG7026593.14.7e-0978.57Anaphase-promoting complex subunit 4, partial [Cucurbita argyrosperma subsp. arg... [more]
EEF40912.12.9e-0665.91conserved hypothetical protein [Ricinus communis][more]
KAG6603714.18.3e-0669.23hypothetical protein SDJN03_04323, partial [Cucurbita argyrosperma subsp. sorori... [more]
RZC03639.11.1e-0567.35Retrovirus-related Pol polyprotein from transposon RE1 [Glycine soja][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UDZ47.6e-1385.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KLE06.2e-0769.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517000 PE=4 SV=1[more]
B9S6031.4e-0665.91Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1062910 PE=4 SV=1[more]
A0A445JYT45.3e-0667.35Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 G... [more]
A0A0S3QZK45.3e-0663.83Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36615PROTEIN, PUTATIVE-RELATEDcoord: 4..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010833.1MS010833.1mRNA