MS010527 (gene) Bitter gourd (TR) v1

Overview
NameMS010527
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLate embryogenesis abundant protein
Locationscaffold35: 347885 .. 348088 (+)
RNA-Seq ExpressionMS010527
SyntenyMS010527
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAATGCAATCAGATTAGGCCGAAGTCCACCGCCGAGTGTTCTAACGACACCTCTACAGCCGCAGCTCCGCCGTAGAAGTTCGCCTGAGCTCCGGTCCCGCCAGGTGATTGGGTTGGCCACTGCACCAGCTGATCAGAGTTCAGATAACATGGACGACTCCAAGAACACCGCCAAAAAGACTGGGTTAGATATTTTTTCT

mRNA sequence

ATGTTCAATGCAATCAGATTAGGCCGAAGTCCACCGCCGAGTGTTCTAACGACACCTCTACAGCCGCAGCTCCGCCGTAGAAGTTCGCCTGAGCTCCGGTCCCGCCAGGTGATTGGGTTGGCCACTGCACCAGCTGATCAGAGTTCAGATAACATGGACGACTCCAAGAACACCGCCAAAAAGACTGGGTTAGATATTTTTTCT

Coding sequence (CDS)

ATGTTCAATGCAATCAGATTAGGCCGAAGTCCACCGCCGAGTGTTCTAACGACACCTCTACAGCCGCAGCTCCGCCGTAGAAGTTCGCCTGAGCTCCGGTCCCGCCAGGTGATTGGGTTGGCCACTGCACCAGCTGATCAGAGTTCAGATAACATGGACGACTCCAAGAACACCGCCAAAAAGACTGGGTTAGATATTTTTTCT

Protein sequence

MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAKKTGLDIFS
Homology
BLAST of MS010527 vs. NCBI nr
Match: XP_022133090.1 (uncharacterized protein LOC111005770 [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 4.6e-23
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          MF+AIRLGRSPPPSVLTTPL PQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNT K
Sbjct: 1  MFHAIRLGRSPPPSVLTTPLPPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTVK 60

Query: 61 KTGLDIFS 69
          KTG DI S
Sbjct: 61 KTG-DIMS 67

BLAST of MS010527 vs. NCBI nr
Match: KAG6603979.1 (hypothetical protein SDJN03_04588, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 7.1e-16
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          M NAIR GRSPPP V+T PL PQLRR  SPELRSRQ+IG +TAP DQ+  NMDDSKNTAK
Sbjct: 1  MINAIRFGRSPPPIVITLPLPPQLRRIDSPELRSRQLIGFSTAP-DQNPQNMDDSKNTAK 60

Query: 61 KTGLDIFS 69
          +TGL  FS
Sbjct: 61 QTGLRSFS 67

BLAST of MS010527 vs. NCBI nr
Match: XP_022978574.1 (uncharacterized protein LOC111478513 [Cucurbita maxima])

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          M NAIR GRSPPP VLT PL PQLRR  SPELRSRQ+IG +TAP DQ+  NMDDSKNTAK
Sbjct: 1  MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAP-DQNPRNMDDSKNTAK 60

Query: 61 KTG 64
          +TG
Sbjct: 61 QTG 62

BLAST of MS010527 vs. NCBI nr
Match: XP_038883658.1 (uncharacterized protein LOC120074572 [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-14
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          M NAIR GR+PPP VLT+PL PQLRR  SPELRSRQ IGLATAP DQ+S++MDDS+N AK
Sbjct: 1  MINAIRFGRTPPPIVLTSPLPPQLRRICSPELRSRQAIGLATAP-DQNSNDMDDSQNKAK 60

Query: 61 KTG 64
          +TG
Sbjct: 61 ETG 62

BLAST of MS010527 vs. NCBI nr
Match: XP_023543426.1 (uncharacterized protein LOC111803316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.4 bits (215), Expect = 5.1e-14
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          M NAIR GRSPPP VLT PL PQLRR  +PELRSRQ IG +TAP DQ+  NMDDSKNTAK
Sbjct: 1  MINAIRFGRSPPPIVLTLPLPPQLRRIDAPELRSRQRIGFSTAP-DQNPQNMDDSKNTAK 60

Query: 61 KTG 64
          +TG
Sbjct: 61 QTG 62

BLAST of MS010527 vs. ExPASy TrEMBL
Match: A0A6J1BUB9 (uncharacterized protein LOC111005770 OS=Momordica charantia OX=3673 GN=LOC111005770 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          MF+AIRLGRSPPPSVLTTPL PQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNT K
Sbjct: 1  MFHAIRLGRSPPPSVLTTPLPPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTVK 60

Query: 61 KTGLDIFS 69
          KTG DI S
Sbjct: 61 KTG-DIMS 67

BLAST of MS010527 vs. ExPASy TrEMBL
Match: A0A6J1IUE6 (uncharacterized protein LOC111478513 OS=Cucurbita maxima OX=3661 GN=LOC111478513 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.5e-15
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          M NAIR GRSPPP VLT PL PQLRR  SPELRSRQ+IG +TAP DQ+  NMDDSKNTAK
Sbjct: 1  MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAP-DQNPRNMDDSKNTAK 60

Query: 61 KTG 64
          +TG
Sbjct: 61 QTG 62

BLAST of MS010527 vs. ExPASy TrEMBL
Match: A0A6J1GES9 (uncharacterized protein LOC111453509 OS=Cucurbita moschata OX=3662 GN=LOC111453509 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          M N+IR GR PPP VLT PL P+LRR  SPELRSRQ+IG +TAP DQ+ +NMDDSKNT K
Sbjct: 1  MINSIRFGRVPPPIVLTLPLPPRLRRIDSPELRSRQLIGFSTAP-DQNQENMDDSKNTDK 60

Query: 61 KTG 64
          ++G
Sbjct: 61 QSG 62

BLAST of MS010527 vs. ExPASy TrEMBL
Match: A0A6J1GEP8 (uncharacterized protein LOC111453508 OS=Cucurbita moschata OX=3662 GN=LOC111453508 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          M NA+R GRSPPP VLT PL PQLRR   PELRSRQ IG +TAP DQ+  NMDDSK+TAK
Sbjct: 1  MINAVRFGRSPPPIVLTLPLPPQLRRIDLPELRSRQRIGFSTAP-DQTPQNMDDSKSTAK 60

Query: 61 KT 63
          +T
Sbjct: 61 QT 61

BLAST of MS010527 vs. ExPASy TrEMBL
Match: A0A6J1IN44 (uncharacterized protein LOC111478521 OS=Cucurbita maxima OX=3661 GN=LOC111478521 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 1  MFNAIRLGRSPPPSVLTTPLQPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTAK 60
          M NAIR GRSPPP VLT PL PQLRR    ELRSRQ+IG +TAP DQ+  NMDDSK+TAK
Sbjct: 1  MINAIRFGRSPPPIVLTLPLPPQLRR----ELRSRQLIGFSTAP-DQNPQNMDDSKSTAK 57

Query: 61 KT 63
          +T
Sbjct: 61 QT 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022133090.14.6e-2392.65uncharacterized protein LOC111005770 [Momordica charantia][more]
KAG6603979.17.1e-1673.53hypothetical protein SDJN03_04588, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022978574.11.3e-1476.19uncharacterized protein LOC111478513 [Cucurbita maxima][more]
XP_038883658.13.0e-1474.60uncharacterized protein LOC120074572 [Benincasa hispida][more]
XP_023543426.15.1e-1474.60uncharacterized protein LOC111803316 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BUB92.2e-2392.65uncharacterized protein LOC111005770 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1IUE66.5e-1576.19uncharacterized protein LOC111478513 OS=Cucurbita maxima OX=3661 GN=LOC111478513... [more]
A0A6J1GES97.9e-1368.25uncharacterized protein LOC111453509 OS=Cucurbita moschata OX=3662 GN=LOC1114535... [more]
A0A6J1GEP81.4e-1270.97uncharacterized protein LOC111453508 OS=Cucurbita moschata OX=3662 GN=LOC1114535... [more]
A0A6J1IN442.0e-1170.97uncharacterized protein LOC111478521 OS=Cucurbita maxima OX=3661 GN=LOC111478521... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010527.1MS010527.1mRNA