MS010129 (gene) Bitter gourd (TR) v1

Overview


Name	MS010129
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Plant-specific transcription factor YABBY family protein
Location	scaffold391: 96352 .. 99288 (-)
RNA-Seq Expression	MS010129
Synteny	MS010129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAGTGTTCCATGCAATAGCATGTTTACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCCCAAGATTCTTCGCAACAGGTATATATATTGAATTGATTAATTAATTAATTATGGAATTGACCATTTTGAAGTGTAAATTTTGTATGTGTTTGCTGATTTTAATTATATATAGGGTCATAAACAGCAGCAAGTTAGCAGTACTGGGGATTCGAGCAAAGAGAGAGGGTCTTCGTCTTCAAAATGCTCAAAAATTGACTCTGCTGAGCGTGACCAACACAGAATCCCTCCTATTCGCCGTGAGTCTCACTCTCTCCTTGTTTTTATTTCATAGTGAAAGTTTTTGAATTATAAATCACGTCTTGTTTTGTTGACAATTCAAACTCTTGTTTTAAGATTTGATGAATATGAATCATATGCTTTTGGCAGATTTGTATTTTAGAACTGTTTTTAGATTGAGTGATTTCAATGGCAGTGAAAATTTTGAAAACAATTTTTAGATTTTGAATTTGAAACTTAAAAAAACTATTAAAAAATAAAATATTTTGTAGATATACTTATAAAAACCCATTTTATTTTTTTGGTTAAAATCAAAACAGGTAAAATATAATTATAGTATAATTATATAATATTGTAAAACAGTTAATTATTTAACAAAATGTTGTGTATATATATATATATTAATAATATTTTAGATGGATGGTTATTAGCTATAGAGTAATTTACAAATATATCATTATACCCCTTTGAACTATTTTTTCAATTGACATTTAATTTACAATCTGCTACCAAACATATATCCAAAAAATACGGTGGATTTTTCATTGAATCCATTGTTTTTATTAGTACAACAGGAGTTAGAATGGACTCAACTTTTGATAAGAAATAAGTTCTTTAACATATTGAGATAGATTGACAGAAAAAGAAGAGTTAATTACTGTAATAGTGCATGGGAATTTAAGTAACCATTTAAGTTATTTCAATCATAGTTTAAATGCCAAGCCAAACACACCCTAAACTGCTATCTCTCTATTGTCTCTCTGTGTGTGAGTGTACATTAATTAGAGTAATCACCTAGTTTATGACTTGGAAAAATAATTGAGGTCCATTTGATGAAGTTTTGGGTTTTTTTTTCTCATTTGGTCAAGACCCACTTTCTTTTTTCCTTTTAGTTTTAAACTATATGTTGATTATATGACTTTAAAGCCATTTTTAGAGAAGTTCAAAAACATATAATTATCATCATCAAAGCAGCTTTAAAATGTTTAAACCTTTTCTCTCCTGGCTAATTAAGGAGTTTCTCCGAACCATATAACTTAAAAATCTATTTCTTCTCTTAGTTCATATATAATGAACAAGGGAACTCTATCAAAGTTTTCTTTTGTTCTAGCAAAACAGACTACATATAAATAAATATAAGAGAAACATACCGAGGGAAGACTTTCAGTTCAGAGATTGTGAGAATGTGAACAAGAGAAGCAACAATTTTGATATCTTCCGAGAAATGGTAGAGTTACTGTACGTTCTATATATATAAGAAAAAAGTCGATTGTTTTTTTTCAACCACATGAACGACAAACTATATATTATAAAAAGCTATATATTTGTAGTTTTTTCTAGTAGAAAGAGGTAGAGGGTCAAATATTTAATTAACTCCAAAGGAGGGCAGCAGTAATTACAAAATGACATGGCATAGAATAACTTCAGCAAGGCAAATAAATGAAAGAAAAGTTTTTTTTTTTTCTTGGGTTGAATTTAATGGGATGCATATGGATGGCCCCATCTAGGATGGTGACGATACATGCATAATAGAATCTGACCCATCAAAATCATGGGCCATTGCTTATACACATATATGTCATTCCGTATGTATGTATGGTATCCATGCCATGTACTGCTTATTTTGGTTAACACTTAGCACAAAAATATGATAACTCTATCCATACCCTTTCTCTGTATTTGCTCTTTCACTCATCTGTGATATGTCACTGATTTCTGATCTGCCCTTTTTTCACTCTTTTTTTTCAACTCTATTTTCCCATCACATTGCCTTTTAATGAAACACTTCTTATTGGTTTAACATGATCATTTGTGTTATATAACAACTTCTTGTATACTGTGATGATTTCAGTATCATATTTGTGTTGGTTTTGTGTTTTTTGAAATTATAATAATGGTTTTGGGTACTGTTGGCAGCACCGGAGAAAAGACAGCGTGTTCCTTCTGCATATAACAGGTTCATCAAGTAAGTTGATTGCTTTATTAATTACTTCGAGCCTTAGTTTTGCTTAATGTTTTATTTTTTGGTTGCAATGAAATTAATTGAGAAATTTGGGGACTTTGTAGAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATTAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATGTAAGTTCTTTGTGTCTCTCTCGTTCCCTCGTTCTTGGTTATGTGATTTATCATCTTTTTTCTGCCTTGGATTTCTGTCTTTGGGATGATGTTTCATATCATAATTTTGTAGTCATTTTTTAAATATGTTTCTTATAAACAAACTAGTTAATTTTTTTTAGAAGAAGAGGTAATCATTTCATTTAAAGTATGCCATAAAATTTCAGTTTTAGTCCTATTTATACTTAACTTTTAAAATATTATGATTAGTCCAGGAAATATGTAGTGTAATTTGTTTTCAATAATGTCATATATATATATAACAGACCATTTTTCTTAATATATTTTCTAACCCTAATCCCACTAATATATAATATCGAACATTGGTTGATTTAAGTAATTAATTCAACTAATTTATTGGGTGTGTTTGGTTGCAGTGGGCACATTTTCCTCACATCCACTTTGGACTGAAGCTGGATGGAAATAAGCAA

mRNA sequence

GTAAGTGTTCCATGCAATAGCATGTTTACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCCCAAGATTCTTCGCAACAGGGTCATAAACAGCAGCAAGTTAGCAGTACTGGGGATTCGAGCAAAGAGAGAGGGTCTTCGTCTTCAAAATGCTCAAAAATTGACTCTGCTGAGCGTGACCAACACAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCTTCTGCATATAACAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATTAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGACTGAAGCTGGATGGAAATAAGCAA

Coding sequence (CDS)

GTAAGTGTTCCATGCAATAGCATGTTTACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCCCAAGATTCTTCGCAACAGGGTCATAAACAGCAGCAAGTTAGCAGTACTGGGGATTCGAGCAAAGAGAGAGGGTCTTCGTCTTCAAAATGCTCAAAAATTGACTCTGCTGAGCGTGACCAACACAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCTTCTGCATATAACAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATTAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGACTGAAGCTGGATGGAAATAAGCAA

Protein sequence

VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERGSSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQ

Homology

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BLAST of MS010129 vs. NCBI nr
Match: XP_022153076.1 (putative axial regulator YABBY 2 [Momordica charantia])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG
Sbjct: 25  VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 84

Query: 61  SSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFS 120
           SSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFS
Sbjct: 85  SSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFS 144

Query: 121 TAAKNWAHFPHIHFGLKLDGNKQ 144
           TAAKNWAHFPHIHFGLKLDGNKQ
Sbjct: 145 TAAKNWAHFPHIHFGLKLDGNKQ 167

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BLAST of MS010129 vs. NCBI nr
Match: XP_038902333.1 (putative axial regulator YABBY 2 isoform X3 [Benincasa hispida])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 136/148 (91.89%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKER- 60
           VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD SQQGHKQQQV++ GDSSK+R 
Sbjct: 25  VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD-SQQGHKQQQVNA-GDSSKDRA 84

Query: 61  -GSSSSKCSKI---DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISH 120
             SSSSKC+KI   DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISH
Sbjct: 85  SSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISH 144

Query: 121 REAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           REAFSTAAKNWAHFPHIHFGLKLDGNKQ
Sbjct: 145 REAFSTAAKNWAHFPHIHFGLKLDGNKQ 170

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BLAST of MS010129 vs. NCBI nr
Match: XP_038902331.1 (putative axial regulator YABBY 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 136/148 (91.89%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKER- 60
           VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD SQQGHKQQQV++ GDSSK+R 
Sbjct: 38  VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD-SQQGHKQQQVNA-GDSSKDRA 97

Query: 61  -GSSSSKCSKI---DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISH 120
             SSSSKC+KI   DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISH
Sbjct: 98  SSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISH 157

Query: 121 REAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           REAFSTAAKNWAHFPHIHFGLKLDGNKQ
Sbjct: 158 REAFSTAAKNWAHFPHIHFGLKLDGNKQ 183

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BLAST of MS010129 vs. NCBI nr
Match: XP_004140176.1 (putative axial regulator YABBY 2 [Cucumis sativus] >XP_011657596.1 putative axial regulator YABBY 2 [Cucumis sativus] >KGN48059.1 hypothetical protein Csa_004092 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 134/149 (89.93%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD SQQGHKQQQV++ GDSSK+R 
Sbjct: 25  VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD-SQQGHKQQQVNA-GDSSKDRA 84

Query: 61  SSSS--KCSKI----DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS 120
           SSSS  K +KI     SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS
Sbjct: 85  SSSSSTKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS 144

Query: 121 HREAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           HREAFSTAAKNWAHFPHIHFGLKLDGNKQ
Sbjct: 145 HREAFSTAAKNWAHFPHIHFGLKLDGNKQ 171

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BLAST of MS010129 vs. NCBI nr
Match: XP_008449608.1 (PREDICTED: putative axial regulator YABBY 2 [Cucumis melo] >XP_016900784.1 PREDICTED: putative axial regulator YABBY 2 [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 132/149 (88.59%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD SQQGHKQQQV++ GDSSK+R 
Sbjct: 25  VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD-SQQGHKQQQVNA-GDSSKDRA 84

Query: 61  SSSS--KCSKI----DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS 120
           SSSS  K +KI     SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS
Sbjct: 85  SSSSSAKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS 144

Query: 121 HREAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           HREAFSTAAKNWAHFPHIHFGLKLDGN +
Sbjct: 145 HREAFSTAAKNWAHFPHIHFGLKLDGNNK 171

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BLAST of MS010129 vs. ExPASy Swiss-Prot
Match: Q9XFB0 (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-43
Identity = 97/146 (66.44%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQ--VVPPQDSSQQGHKQQQVSSTGDSSKE 60
           VSVP  S+FTLVTVRCGHC+NLLS+N+G SL     PP     Q H+Q   S    + K+
Sbjct: 24  VSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLV--TRKD 83

Query: 61  RGSSSSKCSKI-DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHRE 120
             SSS   + + ++ +R+  R+PPIRPPEKRQRVPSAYNRFIKEEIQRIKA NP+ISHRE
Sbjct: 84  CASSSRSTNNLSENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHRE 143

Query: 121 AFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           AFSTAAKNWAHFPHIHFGLKLDGNK+
Sbjct: 144 AFSTAAKNWAHFPHIHFGLKLDGNKK 167

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BLAST of MS010129 vs. ExPASy Swiss-Prot
Match: Q8GW46 (Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.5e-37
Identity = 90/147 (61.22%), Postives = 104/147 (70.75%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           V+VPC+S+F +VTVRCGHC+NL SVNM A+LQ +           +    +T  +  E G
Sbjct: 25  VNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSL----------SRPNFQATNYAVPEYG 84

Query: 61  SSSSKCSKIDS----AERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHR 120
           SSS   +KI S        + RI   RPPEKRQRVPSAYN+FIKEEIQRIKA NPDISHR
Sbjct: 85  SSSRSHTKIPSRISTRTITEQRIVN-RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR 144

Query: 121 EAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           EAFSTAAKNWAHFPHIHFGL L+ NKQ
Sbjct: 145 EAFSTAAKNWAHFPHIHFGLMLESNKQ 160

[Close]

BLAST of MS010129 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-35
Identity = 81/136 (59.56%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           VSVP NSM  +VTVRCGHC++LLSVN+   +Q +P +D  Q   K   +S   + S+   
Sbjct: 26  VSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGS 85

Query: 61  SSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFS 120
           SS      +  ++ D   +  +RPPEKRQRVPSAYNRFIKEEI+RIKA NPDISHREAFS
Sbjct: 86  SSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFS 145

Query: 121 TAAKNWAHFPHIHFGL 137
           TAAKNWAHFP+IHFGL
Sbjct: 146 TAAKNWAHFPNIHFGL 161

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BLAST of MS010129 vs. ExPASy Swiss-Prot
Match: Q2QM17 (Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.7e-31
Identity = 83/153 (54.25%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP---------QDS-------SQQGH 60
           VSVP NSM  +VTVRCGHC+NLLSVN+   +   P          Q+S        Q G+
Sbjct: 25  VSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSGY 84

Query: 61  KQQQVSSTGDSSKERGSSSSKCSKIDSAERDQ-HRIPPIRPPEKRQRVPSAYNRFIKEEI 120
            +   S+   SSK R   ++      S +  Q  +    RPPEKRQRVPSAYNRFIKEEI
Sbjct: 85  PEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEI 144

Query: 121 QRIKAKNPDISHREAFSTAAKNWAHFPHIHFGL 137
           +RIKA NPDISHREAFSTAAKNWAH+P+IHFGL
Sbjct: 145 RRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 177

[Close]

BLAST of MS010129 vs. ExPASy Swiss-Prot
Match: A2X7Q3 (Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-30
Identity = 86/177 (48.59%), Postives = 99/177 (55.93%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGH---------------- 60
           V VPC+S+F  VTVRCGHC+NLLSVN+   L   P    + Q H                
Sbjct: 39  VGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLD 98

Query: 61  ---------KQQQVSSTGDSSKERGSSSSKCSKIDSAE-------RDQHRIP------PI 120
                      +Q +S   SS    SSSS  S   + +       + +  +P        
Sbjct: 99  EVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASAN 158

Query: 121 RPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLD 140
           RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct: 159 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215

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BLAST of MS010129 vs. ExPASy TrEMBL
Match: A0A6J1DJL5 (putative axial regulator YABBY 2 OS=Momordica charantia OX=3673 GN=LOC111020666 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.4e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG
Sbjct: 25  VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 84

Query: 61  SSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFS 120
           SSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFS
Sbjct: 85  SSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFS 144

Query: 121 TAAKNWAHFPHIHFGLKLDGNKQ 144
           TAAKNWAHFPHIHFGLKLDGNKQ
Sbjct: 145 TAAKNWAHFPHIHFGLKLDGNKQ 167

[Close]

BLAST of MS010129 vs. ExPASy TrEMBL
Match: A0A0A0KGY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426940 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.1e-62
Identity = 134/149 (89.93%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD SQQGHKQQQV++ GDSSK+R 
Sbjct: 25  VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD-SQQGHKQQQVNA-GDSSKDRA 84

Query: 61  SSSS--KCSKI----DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS 120
           SSSS  K +KI     SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS
Sbjct: 85  SSSSSTKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS 144

Query: 121 HREAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           HREAFSTAAKNWAHFPHIHFGLKLDGNKQ
Sbjct: 145 HREAFSTAAKNWAHFPHIHFGLKLDGNKQ 171

[Close]

BLAST of MS010129 vs. ExPASy TrEMBL
Match: A0A1S4DXR9 (putative axial regulator YABBY 2 OS=Cucumis melo OX=3656 GN=LOC103491442 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.6e-61
Identity = 132/149 (88.59%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD SQQGHKQQQV++ GDSSK+R 
Sbjct: 25  VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD-SQQGHKQQQVNA-GDSSKDRA 84

Query: 61  SSSS--KCSKI----DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS 120
           SSSS  K +KI     SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS
Sbjct: 85  SSSSSAKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDIS 144

Query: 121 HREAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           HREAFSTAAKNWAHFPHIHFGLKLDGN +
Sbjct: 145 HREAFSTAAKNWAHFPHIHFGLKLDGNNK 171

[Close]

BLAST of MS010129 vs. ExPASy TrEMBL
Match: A0A6J1K4X5 (putative axial regulator YABBY 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490781 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.6e-58
Identity = 120/146 (82.19%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           VSVPCN+MFTLVTVRCGHC+NLLSVNMGASLQV+PP    Q+GHKQ Q++S  DSSK+RG
Sbjct: 25  VSVPCNNMFTLVTVRCGHCTNLLSVNMGASLQVLPP----QEGHKQPQLASPEDSSKDRG 84

Query: 61  SSSSKCSKI---DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHRE 120
           SSSSKCSKI   +SAERDQHRIPPIRPPEKRQR+PSAYNRFIK EIQRIKA NPDISHRE
Sbjct: 85  SSSSKCSKIGSLESAERDQHRIPPIRPPEKRQRIPSAYNRFIKAEIQRIKANNPDISHRE 144

Query: 121 AFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           AFSTAAKNWAH PHIH G KLDGN +
Sbjct: 145 AFSTAAKNWAHLPHIHLGQKLDGNNK 166

[Close]

BLAST of MS010129 vs. ExPASy TrEMBL
Match: A0A6J1K743 (putative axial regulator YABBY 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490781 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.2e-57
Identity = 120/152 (78.95%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQD------SSQQGHKQQQVSSTGD 60
           VSVPCN+MFTLVTVRCGHC+NLLSVNMGASLQV+PPQ+         +GHKQ Q++S  D
Sbjct: 25  VSVPCNNMFTLVTVRCGHCTNLLSVNMGASLQVLPPQEVIPRQIKISEGHKQPQLASPED 84

Query: 61  SSKERGSSSSKCSKI---DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNP 120
           SSK+RGSSSSKCSKI   +SAERDQHRIPPIRPPEKRQR+PSAYNRFIK EIQRIKA NP
Sbjct: 85  SSKDRGSSSSKCSKIGSLESAERDQHRIPPIRPPEKRQRIPSAYNRFIKAEIQRIKANNP 144

Query: 121 DISHREAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           DISHREAFSTAAKNWAH PHIH G KLDGN +
Sbjct: 145 DISHREAFSTAAKNWAHLPHIHLGQKLDGNNK 176

[Close]

BLAST of MS010129 vs. TAIR 10
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-44
Identity = 97/146 (66.44%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQ--VVPPQDSSQQGHKQQQVSSTGDSSKE 60
           VSVP  S+FTLVTVRCGHC+NLLS+N+G SL     PP     Q H+Q   S    + K+
Sbjct: 24  VSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLV--TRKD 83

Query: 61  RGSSSSKCSKI-DSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHRE 120
             SSS   + + ++ +R+  R+PPIRPPEKRQRVPSAYNRFIKEEIQRIKA NP+ISHRE
Sbjct: 84  CASSSRSTNNLSENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHRE 143

Query: 121 AFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           AFSTAAKNWAHFPHIHFGLKLDGNK+
Sbjct: 144 AFSTAAKNWAHFPHIHFGLKLDGNKK 167

[Close]

BLAST of MS010129 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 155.2 bits (391), Expect = 3.9e-38
Identity = 90/147 (61.22%), Postives = 104/147 (70.75%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           V+VPC+S+F +VTVRCGHC+NL SVNM A+LQ +           +    +T  +  E G
Sbjct: 25  VNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSL----------SRPNFQATNYAVPEYG 84

Query: 61  SSSSKCSKIDS----AERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHR 120
           SSS   +KI S        + RI   RPPEKRQRVPSAYN+FIKEEIQRIKA NPDISHR
Sbjct: 85  SSSRSHTKIPSRISTRTITEQRIVN-RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR 144

Query: 121 EAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           EAFSTAAKNWAHFPHIHFGL L+ NKQ
Sbjct: 145 EAFSTAAKNWAHFPHIHFGLMLESNKQ 160

[Close]

BLAST of MS010129 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 155.2 bits (391), Expect = 3.9e-38
Identity = 90/147 (61.22%), Postives = 104/147 (70.75%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERG 60
           V+VPC+S+F +VTVRCGHC+NL SVNM A+LQ +           +    +T  +  E G
Sbjct: 25  VNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSL----------SRPNFQATNYAVPEYG 84

Query: 61  SSSSKCSKIDS----AERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHR 120
           SSS   +KI S        + RI   RPPEKRQRVPSAYN+FIKEEIQRIKA NPDISHR
Sbjct: 85  SSSRSHTKIPSRISTRTITEQRIVN-RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR 144

Query: 121 EAFSTAAKNWAHFPHIHFGLKLDGNKQ 144
           EAFSTAAKNWAHFPHIHFGL L+ NKQ
Sbjct: 145 EAFSTAAKNWAHFPHIHFGLMLESNKQ 160

[Close]

BLAST of MS010129 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30
Identity = 84/168 (50.00%), Postives = 95/168 (56.55%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSV-------------NMGASLQVVPPQDSSQQGHKQQ 60
           VSVP +S+F  VTVRCGHCSNLLSV             N+G S   +PP       +  +
Sbjct: 39  VSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSF--LPPPPPPPPPNLLE 98

Query: 61  QVSSTGDSSKERGSSSSKCS----------------KIDSAERDQHRIPPIRPPEKRQRV 120
           ++ S G +       S   S                 +D  +      P  RPPEKRQRV
Sbjct: 99  EMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRV 158

Query: 121 PSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLD 140
           PSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct: 159 PSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMAD 204

[Close]

BLAST of MS010129 vs. TAIR 10
Match: AT4G00180.2 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30
Identity = 84/168 (50.00%), Postives = 95/168 (56.55%), Query Frame = 0


Query: 1   VSVPCNSMFTLVTVRCGHCSNLLSV-------------NMGASLQVVPPQDSSQQGHKQQ 60
           VSVP +S+F  VTVRCGHCSNLLSV             N+G S   +PP       +  +
Sbjct: 8   VSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSF--LPPPPPPPPPNLLE 67

Query: 61  QVSSTGDSSKERGSSSSKCS----------------KIDSAERDQHRIPPIRPPEKRQRV 120
           ++ S G +       S   S                 +D  +      P  RPPEKRQRV
Sbjct: 68  EMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRV 127

Query: 121 PSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLD 140
           PSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct: 128 PSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMAD 173

The following BLAST results are available for this feature:

BLAST of MS010129 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153076.1	1.3e-72	100.00	putative axial regulator YABBY 2 [Momordica charantia]	[more]
XP_038902333.1	1.1e-63	91.89	putative axial regulator YABBY 2 isoform X3 [Benincasa hispida]	[more]
XP_038902331.1	1.1e-63	91.89	putative axial regulator YABBY 2 isoform X1 [Benincasa hispida]	[more]
XP_004140176.1	1.1e-61	89.93	putative axial regulator YABBY 2 [Cucumis sativus] >XP_011657596.1 putative axia...	[more]
XP_008449608.1	1.2e-60	88.59	PREDICTED: putative axial regulator YABBY 2 [Cucumis melo] >XP_016900784.1 PREDI...	[more]

BLAST of MS010129 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFB0	1.8e-43	66.44	Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV...	[more]
Q8GW46	5.5e-37	61.22	Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1	[more]
Q10FZ7	3.0e-35	59.56	Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1	[more]
Q2QM17	7.7e-31	54.25	Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1	[more]
A2X7Q3	5.0e-30	48.59	Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1	[more]

BLAST of MS010129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJL5	6.4e-73	100.00	putative axial regulator YABBY 2 OS=Momordica charantia OX=3673 GN=LOC111020666 ...	[more]
A0A0A0KGY1	5.1e-62	89.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426940 PE=3 SV=1	[more]
A0A1S4DXR9	5.6e-61	88.59	putative axial regulator YABBY 2 OS=Cucumis melo OX=3656 GN=LOC103491442 PE=3 SV...	[more]
A0A6J1K4X5	7.6e-58	82.19	putative axial regulator YABBY 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1K743	2.2e-57	78.95	putative axial regulator YABBY 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MS010129 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08465.1	1.2e-44	66.44	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	3.9e-38	61.22	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	3.9e-38	61.22	plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	1.3e-30	50.00	Plant-specific transcription factor YABBY family protein	[more]
AT4G00180.2	1.3e-30	50.00	Plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 71..131 e-value: 2.5E-7 score: 32.9
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 81..129
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 1..136 e-value: 3.1E-60 score: 203.6
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 1..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..93
None	No IPR available	PANTHER	PTHR31675:SF30	AXIAL REGULATOR YABBY 2-RELATED	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010129.1	MS010129.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development