MS010025 (gene) Bitter gourd (TR) v1

Overview


Name	MS010025
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Plant protein 1589 of unknown function
Location	scaffold779: 54663 .. 55708 (+)
RNA-Seq Expression	MS010025
Synteny	MS010025

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCAGCATCTGATAGAGAAGTGTCTGATCTTCCACATGACAAAAGAAGAATGCATGGACGCTCTATCCAAACATGCAAATATTAAACCTATCATCACGTCAACAGGTAAACCTTTTCTGTGTGTTTTCTATTACCCACCATAGATATGGTCACAAGGATGTGTATAACTTTGATACTATTAATTGGGTTTTGACAGCAAGACCACGCCTTAGAAAATTAAGCACTTAAAACTTATTTGGAAAAACGAAAAGTGTTTTGTTTTGTCTATAATTAGTCATGCATGATCTCATTCCATTAGCATTTGGCAGGCGGAATCACTAGGGAACTACAAGTTACTTTGTTATTTATTTACTTTTAAAGTTTGCGCTTGCCCAAGGCTCAGACTTTGAGACATCAAAATTTTTCTTATTAAACTCATCTAAAGATTCAAACACGCAACTTCTAGATAAGTGTTACAAAGACCGTCCACCTTATTCAACGGAGCTGCCTCTTGGGAGCTACTAGTTCCTTTGTTATTTGCAATGTTTACCAGCCCCTTTAAGTTGAGTATATATTTCAAACTTCAATATTAATGCTTTCTAAGTCTTTTTCTTTTTGTTCTCTGCTCCTTTTTCTTGGGTTCCCCCCCTTTTGTACTGTCCTGGTAATTCTTTCATTTCTTCTCAATAAAAGTCGGTTTTAGAAGCGAAAAAAAAAAAAAAACGCCTTCAATAATGCCTTTTAAACCTTGAGTTACAAGTTTCTGAATCTCGTTCTTTGTTCCTCTATATCCATAAACATATATATTGATTTTATTTGTATTTTACATTGATAATTAACCTAAATCGTTAAACATTAATGTGGACAGTTTTTTTTAAAAAAAAAAAAAAAATTAAAATTCATGCTTCTTCCATATGCAGTGTGGAGCGAATTAGAGAAGGAAAACAAGGAATTCTTCGAGGCATATGCACAATCTCAAAGCAACAAAGATAGAATGAGTGAAGAAGAGACAAGCCAAATGATCCAAAAGATGATCTCGGATTCCTCCAAAGGGGACCCTAAAAAC

mRNA sequence

GTGCAGCATCTGATAGAGAAGTGTCTGATCTTCCACATGACAAAAGAAGAATGCATGGACGCTCTATCCAAACATGCAAATATTAAACCTATCATCACGTCAACAGTGTGGAGCGAATTAGAGAAGGAAAACAAGGAATTCTTCGAGGCATATGCACAATCTCAAAGCAACAAAGATAGAATGAGTGAAGAAGAGACAAGCCAAATGATCCAAAAGATGATCTCGGATTCCTCCAAAGGGGACCCTAAAAAC

Coding sequence (CDS)

GTGCAGCATCTGATAGAGAAGTGTCTGATCTTCCACATGACAAAAGAAGAATGCATGGACGCTCTATCCAAACATGCAAATATTAAACCTATCATCACGTCAACAGTGTGGAGCGAATTAGAGAAGGAAAACAAGGAATTCTTCGAGGCATATGCACAATCTCAAAGCAACAAAGATAGAATGAGTGAAGAAGAGACAAGCCAAATGATCCAAAAGATGATCTCGGATTCCTCCAAAGGGGACCCTAAAAAC

Protein sequence

VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDRMSEEETSQMIQKMISDSSKGDPKN

Homology

[Close]

BLAST of MS010025 vs. NCBI nr
Match: XP_022133967.1 (uncharacterized protein LOC111006373 isoform X2 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 3.1e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR
Sbjct: 2  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 61

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQKMISDSSKGDPKN
Sbjct: 62 MSEEETSQMIQKMISDSSKGDPKN 85

[Close]

BLAST of MS010025 vs. NCBI nr
Match: XP_022133966.1 (uncharacterized protein LOC111006373 isoform X1 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 3.1e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR
Sbjct: 12 VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 71

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQKMISDSSKGDPKN
Sbjct: 72 MSEEETSQMIQKMISDSSKGDPKN 95

[Close]

BLAST of MS010025 vs. NCBI nr
Match: XP_038890611.1 (uncharacterized protein LOC120080119 [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 1.9e-34
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECMDALSKHA+IKPIITSTVWSELEKENKEFFEAYAQ+ +N DR
Sbjct: 12 VQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWSELEKENKEFFEAYAQTHNNSDR 71

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEE+TSQMIQKMISDSSKGDPKN
Sbjct: 72 MSEEDTSQMIQKMISDSSKGDPKN 95

[Close]

BLAST of MS010025 vs. NCBI nr
Match: XP_004150990.1 (uncharacterized protein LOC101208991 isoform X1 [Cucumis sativus] >KGN51261.1 hypothetical protein Csa_009325 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.5e-34
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECMDALSKHA+IKPIITSTVW+ELEKENKEFFEAYAQS +N DR
Sbjct: 12 VQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFFEAYAQSHNNSDR 71

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQKMISDS KGDPKN
Sbjct: 72 MSEEETSQMIQKMISDSGKGDPKN 95

[Close]

BLAST of MS010025 vs. NCBI nr
Match: XP_008463517.1 (PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo] >XP_008463518.1 PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo] >XP_008463520.1 PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo] >XP_008463521.1 PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo] >XP_008463522.1 PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo] >XP_008463523.1 PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 4.2e-34
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECM+ALSKHA+IKPIITSTVWSELEKENKEFFEAYAQS +N DR
Sbjct: 12 VQHLIEKCLIFHMTKEECMNALSKHADIKPIITSTVWSELEKENKEFFEAYAQSHNNSDR 71

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQKMISDS KGDPKN
Sbjct: 72 MSEEETSQMIQKMISDSGKGDPKN 95

[Close]

BLAST of MS010025 vs. ExPASy TrEMBL
Match: A0A6J1BY89 (uncharacterized protein LOC111006373 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006373 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR
Sbjct: 2  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 61

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQKMISDSSKGDPKN
Sbjct: 62 MSEEETSQMIQKMISDSSKGDPKN 85

[Close]

BLAST of MS010025 vs. ExPASy TrEMBL
Match: A0A6J1BWN4 (uncharacterized protein LOC111006373 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006373 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR
Sbjct: 12 VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 71

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQKMISDSSKGDPKN
Sbjct: 72 MSEEETSQMIQKMISDSSKGDPKN 95

[Close]

BLAST of MS010025 vs. ExPASy TrEMBL
Match: A0A0A0KU49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505220 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECMDALSKHA+IKPIITSTVW+ELEKENKEFFEAYAQS +N DR
Sbjct: 12 VQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFFEAYAQSHNNSDR 71

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQKMISDS KGDPKN
Sbjct: 72 MSEEETSQMIQKMISDSGKGDPKN 95

[Close]

BLAST of MS010025 vs. ExPASy TrEMBL
Match: A0A1S3CJG8 (uncharacterized protein LOC103501658 OS=Cucumis melo OX=3656 GN=LOC103501658 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIFHMTKEECM+ALSKHA+IKPIITSTVWSELEKENKEFFEAYAQS +N DR
Sbjct: 12 VQHLIEKCLIFHMTKEECMNALSKHADIKPIITSTVWSELEKENKEFFEAYAQSHNNSDR 71

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQKMISDS KGDPKN
Sbjct: 72 MSEEETSQMIQKMISDSGKGDPKN 95

[Close]

BLAST of MS010025 vs. ExPASy TrEMBL
Match: A0A6J1E1E4 (uncharacterized protein LOC111429717 OS=Cucurbita moschata OX=3662 GN=LOC111429717 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.0e-33
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQHLIEKCLIF MTKEECMDALSKHANI P+ITSTVW+ELEKENKEFFE YAQSQ +KDR
Sbjct: 12 VQHLIEKCLIFRMTKEECMDALSKHANISPVITSTVWTELEKENKEFFETYAQSQRDKDR 71

Query: 61 MSEEETSQMIQKMISDSSKGDPKN 85
          MSEEETSQMIQ+MIS+SSKGDPKN
Sbjct: 72 MSEEETSQMIQQMISESSKGDPKN 95

[Close]

BLAST of MS010025 vs. TAIR 10
Match: AT3G55240.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-30
Identity = 62/79 (78.48%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQH+IEKCLIFHM+KEEC++ALSKHANI P+ITSTVW ELEKENKEFF+AY + QS +++
Sbjct: 13 VQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAYEERQSKQEQ 72

Query: 61 MSEEETSQMIQKMISDSSK 80
          MSEEET+QMIQK+ISDSSK
Sbjct: 73 MSEEETNQMIQKIISDSSK 91

[Close]

BLAST of MS010025 vs. TAIR 10
Match: AT3G28990.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 104.0 bits (258), Expect = 6.0e-23
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQH+IE CL F+M+KEECM+ALS++ANI PIITSTVW EL KENK+FFE Y Q    K+ 
Sbjct: 13 VQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETYEQKLMKKES 72

Query: 61 MSEEETSQMIQKMIS 76
          MSEEET+Q+IQ +IS
Sbjct: 73 MSEEETNQLIQNIIS 87

[Close]

BLAST of MS010025 vs. TAIR 10
Match: AT5G02580.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 94.0 bits (232), Expect = 6.3e-20
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          V HLIE+C++F+M KEECMDAL KHANIKPIITSTVW EL KENKEFFEAY   +  ++ 
Sbjct: 15 VHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAY--ERRREEI 74

Query: 61 MSEEETSQMIQKMIS 76
           +E+ET++ I+ ++S
Sbjct: 75 PTEKETARRIRDLLS 87

[Close]

BLAST of MS010025 vs. TAIR 10
Match: AT1G10657.3 (Plant protein 1589 of unknown function )

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-13
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQH+IE+C++  MT++EC+ AL  HA+I P++T TVW  L++ENK+FFE Y    S +  
Sbjct: 27 VQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETYGHFVSPRPF 86

Query: 61 MSEEETSQM 70
          +S+    QM
Sbjct: 87 LSKRLWDQM 95

[Close]

BLAST of MS010025 vs. TAIR 10
Match: AT1G10657.2 (Plant protein 1589 of unknown function )

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-12
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  VQHLIEKCLIFHMTKEECMDALSKHANIKPIITSTVWSELEKENKEFFEAYAQSQSNKDR 60
          VQH+IE+C++  MT++EC+ AL  HA+I P++T TVW  L++ENK+FFE Y    S +  
Sbjct: 27 VQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETYGHFVSPRPF 86

Query: 61 MS 63
          +S
Sbjct: 87 LS 88

The following BLAST results are available for this feature:

BLAST of MS010025 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133967.1	3.1e-37	100.00	uncharacterized protein LOC111006373 isoform X2 [Momordica charantia]	[more]
XP_022133966.1	3.1e-37	100.00	uncharacterized protein LOC111006373 isoform X1 [Momordica charantia]	[more]
XP_038890611.1	1.9e-34	92.86	uncharacterized protein LOC120080119 [Benincasa hispida]	[more]
XP_004150990.1	2.5e-34	92.86	uncharacterized protein LOC101208991 isoform X1 [Cucumis sativus] >KGN51261.1 hy...	[more]
XP_008463517.1	4.2e-34	92.86	PREDICTED: uncharacterized protein LOC103501658 [Cucumis melo] >XP_008463518.1 P...	[more]

BLAST of MS010025 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BY89	1.5e-37	100.00	uncharacterized protein LOC111006373 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BWN4	1.5e-37	100.00	uncharacterized protein LOC111006373 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0KU49	1.2e-34	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505220 PE=4 SV=1	[more]
A0A1S3CJG8	2.0e-34	92.86	uncharacterized protein LOC103501658 OS=Cucumis melo OX=3656 GN=LOC103501658 PE=...	[more]
A0A6J1E1E4	5.0e-33	89.29	uncharacterized protein LOC111429717 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]

BLAST of MS010025 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55240.1	3.0e-30	78.48	Plant protein 1589 of unknown function	[more]
AT3G28990.1	6.0e-23	68.00	Plant protein 1589 of unknown function	[more]
AT5G02580.1	6.3e-20	62.67	Plant protein 1589 of unknown function	[more]
AT1G10657.3	7.4e-13	46.38	Plant protein 1589 of unknown function	[more]
AT1G10657.2	1.3e-12	48.39	Plant protein 1589 of unknown function	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 1..52 e-value: 2.6E-27 score: 94.9
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAM	TIGR01589	TIGR01589	coord: 1..53 e-value: 1.1E-23 score: 81.0
IPR006476	Conserved hypothetical protein CHP01589, plant	PANTHER	PTHR31871	OS02G0137100 PROTEIN	coord: 1..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..84
None	No IPR available	PANTHER	PTHR31871:SF18	ANGIOTENSIN-CONVERTING ENZYME 2-RELATED	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010025.1	MS010025.1	mRNA