MS010023 (gene) Bitter gourd (TR) v1

Overview


Name	MS010023
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	scaffold779: 40177 .. 40853 (+)
RNA-Seq Expression	MS010023
Synteny	MS010023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGTATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGTAATCTGAATGACGCATTGCATTCCTATAATTTCTACTTAGAATATTTAGTTGGCTGTTTTCAGATACCATCTCGTTCTTAACTGTTATGTGGGGCTTCAATAATCTTGTGAAAATTTATTGTCTAATCCAGCTCAAATTATAACAGTGCGGATTATTATTCATCTCATATAGTGTTAATTCATATAATGATTTCATGCTTTGTACAACAATTGCAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATC

mRNA sequence

TGTCTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGTATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATC

Coding sequence (CDS)

TGTCTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGTATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATC

Protein sequence

CLPSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Homology

[Close]

BLAST of MS010023 vs. NCBI nr
Match: XP_022134285.1 (60S ribosomal protein L23A [Momordica charantia])

HSP 1 Score: 285.4 bits (729), Expect = 2.9e-73
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 3.5e-71
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 277.7 bits (709), Expect = 6.0e-71
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P AD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRISA
Sbjct: 3   PKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISA 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. NCBI nr
Match: XP_022993268.1 (60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal protein L23a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.7 bits (709), Expect = 6.0e-71
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. NCBI nr
Match: XP_022939581.1 (60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016253.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.7 bits (709), Expect = 6.0e-71
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.2e-67
Identity = 138/152 (90.79%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 62
           P A   KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKK+RNPKYPRIS
Sbjct: 3   PPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 62

Query: 63  ATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV 122
           A PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV
Sbjct: 63  APPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV 122

Query: 123 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           NTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 123 NTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]

BLAST of MS010023 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.1e-67
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 6   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 65
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 125
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MS010023 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-66
Identity = 135/148 (91.22%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 6   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 65
           D TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL K+RNPKYPRISATPR
Sbjct: 7   DVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPR 66

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 125
           NKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MS010023 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.8e-66
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 6   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 65
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 125
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MS010023 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.9e-65
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 5   ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATP 64
           AD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKK+RNPKYPRISA  
Sbjct: 6   ADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPG 65

Query: 65  RNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTL 124
           RNKLD Y ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIK AVKKMYDIQTKKVNTL
Sbjct: 66  RNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTL 125

Query: 125 IRPDGTKKAYVRLTPDYDALDVANKIGII 154
           IRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 126 IRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MS010023 vs. ExPASy TrEMBL
Match: A0A6J1BXW6 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006585 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. ExPASy TrEMBL
Match: A0A1S3CJE6 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P AD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRISA
Sbjct: 3   PKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISA 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. ExPASy TrEMBL
Match: A0A6J1K1Q8 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489334 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 3   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MS010023 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 6   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 65
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 125
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MS010023 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 6   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 65
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 125
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MS010023 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 251.1 bits (640), Expect = 5.6e-67
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 6   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 65
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 125
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MS010023 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 251.1 bits (640), Expect = 5.6e-67
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 6   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 65
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 125
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MS010023 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-63
Identity = 130/148 (87.84%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 6   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 65
           D TKKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 125
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:

BLAST of MS010023 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134285.1	2.9e-73	99.34	60S ribosomal protein L23A [Momordica charantia]	[more]
XP_008463516.1	3.5e-71	97.35	PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p...	[more]
XP_022154290.1	6.0e-71	96.69	60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p...	[more]
XP_022993268.1	6.0e-71	97.35	60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal...	[more]
XP_022939581.1	6.0e-71	97.35	60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal prot...	[more]

BLAST of MS010023 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22644	4.2e-67	90.79	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	7.1e-67	91.22	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
Q9AT35	3.5e-66	91.22	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
Q9M3C3	7.8e-66	90.54	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]
Q07761	3.9e-65	88.59	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]

BLAST of MS010023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXW6	1.4e-73	99.34	50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3C5W3	1.7e-71	97.35	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CJE6	1.7e-71	97.35	50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656...	[more]
A0A6J1DJ76	2.9e-71	96.69	50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1K1Q8	2.9e-71	97.35	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of MS010023 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	5.0e-68	91.22	ribosomal protein L23AA	[more]
AT2G39460.2	5.0e-68	91.22	ribosomal protein L23AA	[more]
AT3G55280.1	5.6e-67	90.54	ribosomal protein L23AB	[more]
AT3G55280.2	5.6e-67	90.54	ribosomal protein L23AB	[more]
AT3G55280.3	1.3e-63	87.84	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 77..153 e-value: 8.6E-29 score: 97.7
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 73..135 e-value: 3.3E-14 score: 53.0
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 6..153
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 73..153 score: 22.185936
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 14..62 e-value: 2.2E-18 score: 66.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 34..153 e-value: 3.6E-53 score: 180.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR11620:SF78	60S RIBOSOMAL PROTEIN L23A-2	coord: 6..153
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 131..146
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 70..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010023.1	MS010023.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome