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MS009854 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGAATCCGATACAATCTCCTCTGATCCGTCTCCTGTTTGCTTTGCTTTTCGTTGCGTCAACGATCGCGACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCTTCCCTCACTCGCCTCAAGTCCGGCGCCGAACGCGTCTCCGTCTCCATAGACATTTACAATCAAGGATCTTCGTATGTTCCCTTCAATTCCTCCTATCTGATGTCAATTTTGTTTCCTAGATTCAGCTTTACCGACCGTGCGGTCTCTGAGTTGTAGATCGAATCGCTCTTTGCGCATGCGTGGTTTGATTGTTTTTTTAGTTTTGTTCTGGATCTAAATTGGATTTGGTTGCTCGTTGTTTGGTCTTTTTTTTTTTTTCCTTCGCTTCTCTCTCTGTTTCTGTGATTGTTTTTAAAGTAGTCGTTTTCCGCGAAAAAAATGTCGAGTTCAGGCTCCGGGAAAATGTTTTCGTTCATAGAAGAATAGTAGTTTTCATTGGCATGGAGAGGTGGACGAGGTGGGCAACTGGATGTGAAGTTTGGTGCATTTGTAATTTTAGCGATTATGAAAAAGGTTCGTAATGTCTTGGTGCGATGCCAAGATCTGAAAGCAACCAGGCGTAGCTCCCTTAGCTGCGTCAGTAAATTTTTCATTTTGCCTGTTTAATGTAAAATTGCGTCAAATGGGTTTTCAAGTCACTTGATTTCGACATTGCTGCATTGCCTGTCAGAAAATTCGATCGGCGATGATATTCATGGTCATTCCAGGAGTTGTGACTAGAACTTGTTTCACATTAAAAATTGTTCTGTAGGGCTGCTATACATTGTAGAGCAGGAAGAGATGAACTGGAGTGGGTTTTTGTCAAATTTTTATAATTTGATGTGAACTACTCAAGCTGTTGCTTCAATCGGGTTGTCTTTTATTTTTTTCCTTAAACTTCACATTTGCTATCTACTAATAATGCAGATTGCAGATGTTAAGTTTAAGATAAGTGAGTACTAACTGAAAAGTGAAAGTTGTCGGGACCAAAGTAGCACTTGTATCTATTTTACTGAAACGAAGCAGATAATTACTTATGTATTTGACTATGAACTATCCAGGAAGTGCATGCTGGTGCAAATCGAAGAAATTACAGATGTTCTTTTGATCTGTTTACTTGGGCTTCTATTATTTATGATAAAGGAGAGCGTGATAAATTGGAACTCTGGAAAGGAGAAATTACCCGTTTCACTTATCTTTTTCTCTCTTTTTATATGGGAAATCTCCTCGTGTTTAGTCTTTTCCTGTCATGTTCCTTTTCTTGACCTTTTTACTGTCCTTGAAGCGGATTATACTGTGCAAATTTATCCTTTTGGCTTATTGGTTCGTTTTTACCTTCTTAAATTTCTTTTTGTAGTTTTGCTATCTTATGTTGGGACTTGAAAAAAGAAACTCTTTTTCCTTCGGTAAATTTCATTTTTAAGTGAGCTGGTTTCTTATGTTTTCTCCCTGTTTTTGTATTTTCCTTATAATGATTACCAGGACCGCGTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGTTGACGTCTTTGATATTATCAGTGGTGAAACTTCAAAATCGTGGGAAAGACTTGATGCGTAAGTGACACCATTTATTTTGTATTCTCTCCTATATGCAATGAAATCCTCCATTCTTTTTTCTGCTGCTAACACATTTCCCATGTTTGGCAGTGGTGCTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCCGCTGTTATCACATTCCGCGTCCCTACAAAATCCGCTTTACAGGTAAAATATCTGATCAACGATGGTTATGTTCTGATTGCTTAAAGATGCAGACGTTTTATCGTTTTTCTGGATATCTGTAGGAGGCCTACTCAACCCCAATACTACCTTTGGATGTCCTTGCCGACAGGCCACCGGAGAAGAAGTTTGAGTGGGTAAGTTAATCCAAACAATTTTCTTTTCTCGTTTGAAGCTTAATGGTTGATTTACCAATTTGGTTAACTGGTGAAATTTTGCCTTTGCATGAAATTTATCCTTCACTGGCGCATAATTTCAACAGGTTAAGGTACGATCAATTTCATGTATCCATCTTGATTCTTTGTCATTCTGATCAATGTCTTTTTAATTGACCCAATACTTCTTTCACCCTGCAGAGGCTGCTCGCAAAGTACGGCTCCCTGATCTCGGTGGTCTCCATTGTAGTTCTGTTCATCTATCTGGTGGCGTCCCCATCGAAATCTGCCGCAAAAGGAAGCAAGAAGAAGCGT ATGGCGAATCCGATACAATCTCCTCTGATCCGTCTCCTGTTTGCTTTGCTTTTCGTTGCGTCAACGATCGCGACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCTTCCCTCACTCGCCTCAAGTCCGGCGCCGAACGCGTCTCCGTCTCCATAGACATTTACAATCAAGGATCTTCGACCGCGTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGTTGACGTCTTTGATATTATCAGTGGTGAAACTTCAAAATCGTGGGAAAGACTTGATGCTGGTGCTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCCGCTGTTATCACATTCCGCGTCCCTACAAAATCCGCTTTACAGGAGGCCTACTCAACCCCAATACTACCTTTGGATGTCCTTGCCGACAGGCCACCGGAGAAGAAGTTTGAGTGGAGGCTGCTCGCAAAGTACGGCTCCCTGATCTCGGTGGTCTCCATTGTAGTTCTGTTCATCTATCTGGTGGCGTCCCCATCGAAATCTGCCGCAAAAGGAAGCAAGAAGAAGCGT ATGGCGAATCCGATACAATCTCCTCTGATCCGTCTCCTGTTTGCTTTGCTTTTCGTTGCGTCAACGATCGCGACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCTTCCCTCACTCGCCTCAAGTCCGGCGCCGAACGCGTCTCCGTCTCCATAGACATTTACAATCAAGGATCTTCGACCGCGTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGTTGACGTCTTTGATATTATCAGTGGTGAAACTTCAAAATCGTGGGAAAGACTTGATGCTGGTGCTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCCGCTGTTATCACATTCCGCGTCCCTACAAAATCCGCTTTACAGGAGGCCTACTCAACCCCAATACTACCTTTGGATGTCCTTGCCGACAGGCCACCGGAGAAGAAGTTTGAGTGGAGGCTGCTCGCAAAGTACGGCTCCCTGATCTCGGTGGTCTCCATTGTAGTTCTGTTCATCTATCTGGTGGCGTCCCCATCGAAATCTGCCGCAAAAGGAAGCAAGAAGAAGCGT MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSIVVLFIYLVASPSKSAAKGSKKKR Homology
BLAST of MS009854 vs. NCBI nr
Match: XP_022156478.1 (translocon-associated protein subunit beta [Momordica charantia]) HSP 1 Score: 362.5 bits (929), Expect = 2.3e-96 Identity = 192/194 (98.97%), Postives = 192/194 (98.97%), Query Frame = 0
BLAST of MS009854 vs. NCBI nr
Match: XP_038894726.1 (translocon-associated protein subunit beta [Benincasa hispida]) HSP 1 Score: 335.5 bits (859), Expect = 3.0e-88 Identity = 173/194 (89.18%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of MS009854 vs. NCBI nr
Match: KAG7017859.1 (Translocon-associated protein subunit beta [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 335.5 bits (859), Expect = 3.0e-88 Identity = 174/192 (90.62%), Postives = 182/192 (94.79%), Query Frame = 0
BLAST of MS009854 vs. NCBI nr
Match: XP_008450004.1 (PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_008450005.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_016900804.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >KAA0037850.1 translocon-associated protein subunit beta [Cucumis melo var. makuwa] >TYK27227.1 translocon-associated protein subunit beta [Cucumis melo var. makuwa]) HSP 1 Score: 334.3 bits (856), Expect = 6.7e-88 Identity = 173/194 (89.18%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of MS009854 vs. NCBI nr
Match: KAG7022632.1 (Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 334.0 bits (855), Expect = 8.8e-88 Identity = 173/192 (90.10%), Postives = 181/192 (94.27%), Query Frame = 0
BLAST of MS009854 vs. ExPASy Swiss-Prot
Match: P23438 (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08 Identity = 47/183 (25.68%), Postives = 91/183 (49.73%), Query Frame = 0
BLAST of MS009854 vs. ExPASy Swiss-Prot
Match: Q5E9E4 (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07 Identity = 48/181 (26.52%), Postives = 90/181 (49.72%), Query Frame = 0
BLAST of MS009854 vs. ExPASy Swiss-Prot
Match: Q9CPW5 (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.6e-07 Identity = 46/183 (25.14%), Postives = 88/183 (48.09%), Query Frame = 0
BLAST of MS009854 vs. ExPASy Swiss-Prot
Match: P43308 (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 6.1e-07 Identity = 46/183 (25.14%), Postives = 88/183 (48.09%), Query Frame = 0
BLAST of MS009854 vs. ExPASy TrEMBL
Match: A0A6J1DQQ5 (Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC111023364 PE=3 SV=1) HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96 Identity = 192/194 (98.97%), Postives = 192/194 (98.97%), Query Frame = 0
BLAST of MS009854 vs. ExPASy TrEMBL
Match: A0A1S3BNZ1 (Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC103491721 PE=3 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 3.3e-88 Identity = 173/194 (89.18%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of MS009854 vs. ExPASy TrEMBL
Match: A0A5D3DTY4 (Translocon-associated protein subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001090 PE=3 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 3.3e-88 Identity = 173/194 (89.18%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of MS009854 vs. ExPASy TrEMBL
Match: A0A6J1J7C6 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87 Identity = 175/194 (90.21%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of MS009854 vs. ExPASy TrEMBL
Match: A0A6J1J5V1 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87 Identity = 175/194 (90.21%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of MS009854 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein ) HSP 1 Score: 245.4 bits (625), Expect = 3.8e-65 Identity = 124/194 (63.92%), Postives = 155/194 (79.90%), Query Frame = 0
BLAST of MS009854 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein ) HSP 1 Score: 245.4 bits (625), Expect = 3.8e-65 Identity = 124/194 (63.92%), Postives = 155/194 (79.90%), Query Frame = 0
BLAST of MS009854 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein ) HSP 1 Score: 245.4 bits (625), Expect = 3.8e-65 Identity = 124/194 (63.92%), Postives = 155/194 (79.90%), Query Frame = 0
BLAST of MS009854 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein ) HSP 1 Score: 245.4 bits (625), Expect = 3.8e-65 Identity = 124/194 (63.92%), Postives = 155/194 (79.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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