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MS009809 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCTTCTTCCCTCTCCAATTTCTTCTCCTTCCTCTTCCCCACCAAACCCCCGCCACCCAAATCCCCGCCGCCCCTCGCTTTCTCTCCTCCTCCGGCGACGGCTCAGATTCAGCCCCGCAAATCCAGAGATGGATCGCTTTCCCTGAAGCCCCAACATGAACAGGGTCCGAGCCACTCCGAGCCCTTGTCCGCCGAATTGGCCTCCCTCATCTGCCCCTCCCTCGCCTTCGCCAACACTCTCTTCTTCAGATCGGCCTACAATGTGCAGGTGGTCGTGGATGATAACGAGCCGGAGGAGAGGCTTCTCAACAGATTCCGGCGAGAGGTCATGAGGGCCGGCGTCATTCAGGAGTGTAAGAGACGGCGATTCTTTGAGAACACGCAGGATGTCAGGAAGCGCAAGTCTCGCGAGGCTGCCAAGCGCAACCGCCGGAGGTCTGTTCTTTTGGTTCTGGAATTTCTTCCTTCTGGTTTCTTTTGAGATTTGTGTGTTCTTGCTTTTAAAATCTCTGCGATCGTTTCTTGGTGCTTCGGTTTCTTGTGAGATTCTCTTGCTTGGAACTGTTCTTGTTCTTTTGGGTGTTGAGTTTGATTACTAGGAGAATGATGGGATGATAGAGGATTTAGGTCTTGTTCTAGGTAGAATGAGAGATAAAGAAGTAACCTCTGAATGAGAAATCCTCTTGATTACTAATGCGAAAACCAAAACTCAAAGTCATGTTGTAAGACTGGAATGATGGATAAAGATAAATGTGAGGGAGGGCATGTGTTCTGTTCTAGACCGGCTCGCTTAGTCTTCAATATATCGTCAATAGGACGCAGCAGCCTCTGAGCTAAAAACCGCTCATAGGGTGTTATGGAGTTAGCCAAAGATAAACGCATATAAAAGGATAGGTGCATAGACTCGATGGAAGCTGTTCTAACAAATGGAGTTGACTACGTCGCTTTAGTAAAGGAACGAATCGATCCTTCTTTCATTTTTGCCGTCTTGATTTTGACAGTGATTATCATTATAGGATTCTATTCAACTGAGGTTTTATGATTTGGATGATGAACACAGGCGCCCACAGCCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGACAATTCCTTATTA GCTTCTTCCCTCTCCAATTTCTTCTCCTTCCTCTTCCCCACCAAACCCCCGCCACCCAAATCCCCGCCGCCCCTCGCTTTCTCTCCTCCTCCGGCGACGGCTCAGATTCAGCCCCGCAAATCCAGAGATGGATCGCTTTCCCTGAAGCCCCAACATGAACAGGGTCCGAGCCACTCCGAGCCCTTGTCCGCCGAATTGGCCTCCCTCATCTGCCCCTCCCTCGCCTTCGCCAACACTCTCTTCTTCAGATCGGCCTACAATGTGCAGGTGGTCGTGGATGATAACGAGCCGGAGGAGAGGCTTCTCAACAGATTCCGGCGAGAGGTCATGAGGGCCGGCGTCATTCAGGAGTGTAAGAGACGGCGATTCTTTGAGAACACGCAGGATGTCAGGAAGCGCAAGTCTCGCGAGGCTGCCAAGCGCAACCGCCGGAGGCGCCCACAGCCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGACAATTCCTTATTA GCTTCTTCCCTCTCCAATTTCTTCTCCTTCCTCTTCCCCACCAAACCCCCGCCACCCAAATCCCCGCCGCCCCTCGCTTTCTCTCCTCCTCCGGCGACGGCTCAGATTCAGCCCCGCAAATCCAGAGATGGATCGCTTTCCCTGAAGCCCCAACATGAACAGGGTCCGAGCCACTCCGAGCCCTTGTCCGCCGAATTGGCCTCCCTCATCTGCCCCTCCCTCGCCTTCGCCAACACTCTCTTCTTCAGATCGGCCTACAATGTGCAGGTGGTCGTGGATGATAACGAGCCGGAGGAGAGGCTTCTCAACAGATTCCGGCGAGAGGTCATGAGGGCCGGCGTCATTCAGGAGTGTAAGAGACGGCGATTCTTTGAGAACACGCAGGATGTCAGGAAGCGCAAGTCTCGCGAGGCTGCCAAGCGCAACCGCCGGAGGCGCCCACAGCCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGACAATTCCTTATTA ASSLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNSLL Homology
BLAST of MS009809 vs. NCBI nr
Match: XP_022154139.1 (30S ribosomal protein S21, chloroplastic [Momordica charantia]) HSP 1 Score: 342.4 bits (877), Expect = 2.3e-90 Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0
BLAST of MS009809 vs. NCBI nr
Match: KAA0042889.1 (hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK05292.1 hypothetical protein E5676_scaffold108G001120 [Cucumis melo var. makuwa]) HSP 1 Score: 275.0 bits (702), Expect = 4.6e-70 Identity = 152/181 (83.98%), Postives = 164/181 (90.61%), Query Frame = 0
BLAST of MS009809 vs. NCBI nr
Match: XP_038900112.1 (30S ribosomal protein S21, chloroplastic [Benincasa hispida]) HSP 1 Score: 274.6 bits (701), Expect = 6.0e-70 Identity = 151/183 (82.51%), Postives = 162/183 (88.52%), Query Frame = 0
BLAST of MS009809 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]) HSP 1 Score: 274.6 bits (701), Expect = 6.0e-70 Identity = 152/179 (84.92%), Postives = 162/179 (90.50%), Query Frame = 0
BLAST of MS009809 vs. NCBI nr
Match: AAL35983.1 (ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Protein S21 [Spinacia oleracea]) HSP 1 Score: 268.5 bits (685), Expect = 4.3e-68 Identity = 148/181 (81.77%), Postives = 162/181 (89.50%), Query Frame = 0
BLAST of MS009809 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2) HSP 1 Score: 150.2 bits (378), Expect = 2.2e-35 Identity = 98/181 (54.14%), Postives = 119/181 (65.75%), Query Frame = 0
BLAST of MS009809 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04 Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0
BLAST of MS009809 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.5e-04 Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0
BLAST of MS009809 vs. ExPASy Swiss-Prot
Match: A1WW12 (30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rpsU PE=3 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 5.9e-04 Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0
BLAST of MS009809 vs. ExPASy Swiss-Prot
Match: B0JIQ1 (30S ribosomal protein S21 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rpsU PE=3 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 5.9e-04 Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0
BLAST of MS009809 vs. ExPASy TrEMBL
Match: A0A6J1DL66 (30S ribosomal protein S21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021467 PE=3 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90 Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0
BLAST of MS009809 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 2.2e-70 Identity = 152/181 (83.98%), Postives = 164/181 (90.61%), Query Frame = 0
BLAST of MS009809 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 2.9e-70 Identity = 152/179 (84.92%), Postives = 162/179 (90.50%), Query Frame = 0
BLAST of MS009809 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 2.1e-68 Identity = 148/181 (81.77%), Postives = 162/181 (89.50%), Query Frame = 0
BLAST of MS009809 vs. ExPASy TrEMBL
Match: A0A0A0LDL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 2.1e-68 Identity = 148/181 (81.77%), Postives = 162/181 (89.50%), Query Frame = 0
BLAST of MS009809 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein ) HSP 1 Score: 159.8 bits (403), Expect = 2.0e-39 Identity = 93/179 (51.96%), Postives = 127/179 (70.95%), Query Frame = 0
BLAST of MS009809 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein ) HSP 1 Score: 97.8 bits (242), Expect = 9.3e-21 Identity = 70/181 (38.67%), Postives = 109/181 (60.22%), Query Frame = 0
BLAST of MS009809 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein ) HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15 Identity = 58/144 (40.28%), Postives = 87/144 (60.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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