Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGTCAATTTCTTGTTGTTTTTGCTCTGATCTTCGCCGCCGCCGTCGCCGGCGTTTTTGCCGAGGCTCCGGCTAGCTCGCCCTCGGATGCCCCGGCGCCGAAGGCCTCCAATTCGTCGTCTTCTCCGTCGTCTTCGCTGGCGGCGTCTCCCAAGGCGGAGTCGGAGTCTGACTCTCCGTCGTCTTCTCCGGCGGCGTCTCCCAAGTCCAACTCCACCGACGCGCCGGCCGGCTCCCCGGACTCCTCCCCTGCCACTTCTCCGTCGCCTGCGAGCGACTCTCCGGCCGATTCTCCCGCCGATGCCCCCACCGCCGATTCGCCTGACGCTGCCTCGCCGGAGGCCGACGTCTCCTCTCCCCCCTCCCCTGGCTCCGCCGAAAGCCCTGCCGCCGATGGCCCTGACGCTGCCGCCGATGGCCCTGATGCCGCCGCCGATGGCCCCGCCTCTGATTCTCCGGCTGACGCACCCGGCGGTGCCGCAGATAGCGGCGCTTCTGATCTGAAATTCGCAGCCGCCGCCGTTGGTGGTGTCGCCGTTGCCGGTCTCTTTGCTTTC
mRNA sequence
ATGGCTCGTCAATTTCTTGTTGTTTTTGCTCTGATCTTCGCCGCCGCCGTCGCCGGCGTTTTTGCCGAGGCTCCGGCTAGCTCGCCCTCGGATGCCCCGGCGCCGAAGGCCTCCAATTCGTCGTCTTCTCCGTCGTCTTCGCTGGCGGCGTCTCCCAAGGCGGAGTCGGAGTCTGACTCTCCGTCGTCTTCTCCGGCGGCGTCTCCCAAGTCCAACTCCACCGACGCGCCGGCCGGCTCCCCGGACTCCTCCCCTGCCACTTCTCCGTCGCCTGCGAGCGACTCTCCGGCCGATTCTCCCGCCGATGCCCCCACCGCCGATTCGCCTGACGCTGCCTCGCCGGAGGCCGACGTCTCCTCTCCCCCCTCCCCTGGCTCCGCCGAAAGCCCTGCCGCCGATGGCCCTGACGCTGCCGCCGATGGCCCTGATGCCGCCGCCGATGGCCCCGCCTCTGATTCTCCGGCTGACGCACCCGGCGGTGCCGCAGATAGCGGCGCTTCTGATCTGAAATTCGCAGCCGCCGCCGTTGGTGGTGTCGCCGTTGCCGGTCTCTTTGCTTTC
Coding sequence (CDS)
ATGGCTCGTCAATTTCTTGTTGTTTTTGCTCTGATCTTCGCCGCCGCCGTCGCCGGCGTTTTTGCCGAGGCTCCGGCTAGCTCGCCCTCGGATGCCCCGGCGCCGAAGGCCTCCAATTCGTCGTCTTCTCCGTCGTCTTCGCTGGCGGCGTCTCCCAAGGCGGAGTCGGAGTCTGACTCTCCGTCGTCTTCTCCGGCGGCGTCTCCCAAGTCCAACTCCACCGACGCGCCGGCCGGCTCCCCGGACTCCTCCCCTGCCACTTCTCCGTCGCCTGCGAGCGACTCTCCGGCCGATTCTCCCGCCGATGCCCCCACCGCCGATTCGCCTGACGCTGCCTCGCCGGAGGCCGACGTCTCCTCTCCCCCCTCCCCTGGCTCCGCCGAAAGCCCTGCCGCCGATGGCCCTGACGCTGCCGCCGATGGCCCTGATGCCGCCGCCGATGGCCCCGCCTCTGATTCTCCGGCTGACGCACCCGGCGGTGCCGCAGATAGCGGCGCTTCTGATCTGAAATTCGCAGCCGCCGCCGTTGGTGGTGTCGCCGTTGCCGGTCTCTTTGCTTTC
Protein sequence
MARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNSSSSPSSSLAASPKAESESDSPSSSPAASPKSNSTDAPAGSPDSSPATSPSPASDSPADSPADAPTADSPDAASPEADVSSPPSPGSAESPAADGPDAAADGPDAAADGPASDSPADAPGGAADSGASDLKFAAAAVGGVAVAGLFAF
Homology
BLAST of MS009782 vs. NCBI nr
Match:
KAA0066977.1 (mucin-1 [Cucumis melo var. makuwa] >TYK20871.1 mucin-1 [Cucumis melo var. makuwa])
HSP 1 Score: 128.3 bits (321), Expect = 7.1e-26
Identity = 121/200 (60.50%), Postives = 144/200 (72.00%), Query Frame = 0
Query: 1 MARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNSSS---SPSSSL-AASPKAES 60
MA Q ++VFALIF AAVAGVFAEAP SPS +P+PKAS S S SPSSS AASPKA S
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAASPKASS 60
Query: 61 ESDSPSSSPAASPKSNSTDA-----PAGSPDSSPATSPSPASDSPADSP-ADAP---TAD 120
E+ SPS + A+SP S+S+DA P SP SSP+ SPSPA+DSPADSP AD+P AD
Sbjct: 61 EATSPSPA-ASSPSSSSSDAPTSDSPTSSPKSSPSVSPSPATDSPADSPAADSPADNVAD 120
Query: 121 SPDAASPEADVSSPPSPGSAESPAADGPDAAADGPDAAADGPASDSPADAPGGAADSGAS 180
+P AASP++DVSSPPSP +A++P AADGP AADGP +DSPAD+P G S +
Sbjct: 121 TPTAASPDSDVSSPPSPDAADAP------TAADGP-MAADGPTADSPADSPAGDDKSSGT 180
Query: 181 DLKFAAAAVGGVAVAGLFAF 188
DLK +A VGGV AG +AF
Sbjct: 181 DLKLTSAVVGGVIAAGFYAF 192
BLAST of MS009782 vs. NCBI nr
Match:
XP_008450043.1 (PREDICTED: mucin-1 [Cucumis melo])
HSP 1 Score: 128.3 bits (321), Expect = 7.1e-26
Identity = 121/200 (60.50%), Postives = 144/200 (72.00%), Query Frame = 0
Query: 1 MARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNSSS---SPSSSL-AASPKAES 60
MA Q ++VFALIF AAVAGVFAEAP SPS +P+PKAS S S SPSSS AASPKA S
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAASPKASS 60
Query: 61 ESDSPSSSPAASPKSNSTDA-----PAGSPDSSPATSPSPASDSPADSP-ADAP---TAD 120
E+ SPS + A+SP S+S+DA P SP SSP+ SPSPA+DSPADSP AD+P AD
Sbjct: 61 ETTSPSPA-ASSPSSSSSDAPTSDSPTSSPKSSPSVSPSPATDSPADSPAADSPADNVAD 120
Query: 121 SPDAASPEADVSSPPSPGSAESPAADGPDAAADGPDAAADGPASDSPADAPGGAADSGAS 180
+P AASP++DVSSPPSP +A++P AADGP AADGP +DSPAD+P G S +
Sbjct: 121 TPTAASPDSDVSSPPSPDAADAP------TAADGP-IAADGPTADSPADSPAGDDKSSGT 180
Query: 181 DLKFAAAAVGGVAVAGLFAF 188
DLK +A VGGV AG +AF
Sbjct: 181 DLKLTSAVVGGVIAAGFYAF 192
BLAST of MS009782 vs. NCBI nr
Match:
XP_031737954.1 (classical arabinogalactan protein 11 [Cucumis sativus] >KAE8650788.1 hypothetical protein Csa_017502 [Cucumis sativus])
HSP 1 Score: 118.6 bits (296), Expect = 5.7e-23
Identity = 123/210 (58.57%), Postives = 148/210 (70.48%), Query Frame = 0
Query: 1 MARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNSSS---SPSSSL-AASPKAES 60
MA Q ++VFALIF AAVAGVFAEAP SPS +P+PKAS S S SPSSS A SPKA
Sbjct: 1 MASQTVLVFALIFLAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAGSPKASP 60
Query: 61 ESDSPS---SSPAASPKSNSTDAPAGSPDSSPATSPSPASDSPADSPA-DAPTADS---- 120
E+ SPS SSP++S + ++++P SP SSP+ SPSPA+DSP+DSPA D+P ADS
Sbjct: 61 ETTSPSPAASSPSSSSDAPTSNSPTSSPTSSPSVSPSPATDSPSDSPASDSPVADSPADS 120
Query: 121 ----PDAASPEADVSSPPSPGSAESPAADGPDAAADGPDA-----AADGP-ASDSPADAP 180
P AASP++DVSSPPSP +A++P ADGP AAADGP A AADGP A+DSPAD+P
Sbjct: 121 PADTPTAASPDSDVSSPPSPDAADAPTADGP-AAADGPTAADGPTAADGPVAADSPADSP 180
Query: 181 GGAADSGASDLKFAAA-AVGGVAVAGLFAF 188
SG +DLK +A VG VA G FAF
Sbjct: 181 ASDESSG-TDLKLTSAMVVGVVATVGFFAF 208
BLAST of MS009782 vs. NCBI nr
Match:
XP_022934589.1 (mucin-1-like [Cucurbita moschata])
HSP 1 Score: 104.8 bits (260), Expect = 8.5e-19
Identity = 117/239 (48.95%), Postives = 146/239 (61.09%), Query Frame = 0
Query: 2 ARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNS---SSSPSSSLAASP---KAE 61
++ F++VFALIF AAVAG FAEAP ++PS++PAPK++ S +SSPSSS A+SP A+
Sbjct: 3 SQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTPAD 62
Query: 62 SESDSPSSSPAASPKSNSTDAPA------------------------------------- 121
+ +D+P+ +PA +P D PA
Sbjct: 63 TPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPASNS 122
Query: 122 --GSPDSSPATSPSPASDSPADSPADAPTADSPDAASPEADVSSPPS--PGSAESPAADG 181
SPDSSP+ SPSPA+DSPA SPAD + SP AASP++D SSPPS P +A+SP ADG
Sbjct: 123 PDSSPDSSPSVSPSPATDSPAASPAD---SGSP-AASPDSDSSSPPSPTPDAADSPVADG 182
Query: 182 PDAA-----ADGPDAAADGPASDSPADAPGGAADSGASDLKFAAAAV-GGVAVAGLFAF 188
P A ADGP + ADG SDSPAD+P G ADSG S LK +AAV G VAVAGLFAF
Sbjct: 183 PSEADGPSEADGP-SEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVAVAGLFAF 236
BLAST of MS009782 vs. NCBI nr
Match:
XP_023529000.1 (classical arabinogalactan protein 6-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 102.4 bits (254), Expect = 4.2e-18
Identity = 120/256 (46.88%), Postives = 149/256 (58.20%), Query Frame = 0
Query: 2 ARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNS---SSSPSSSLAASP------ 61
++ F++VFALIF AAVAGVFAEAP +SPS++PAPK++ S SSPSSS A+SP
Sbjct: 3 SQSFVLVFALIFVAAVAGVFAEAPTASPSESPAPKSAPSDSEESSPSSSPASSPADTPAD 62
Query: 62 -----------------------------KAESESDSPSSSPAASPKSNSTDAPA----- 121
A++ +D+P+ +PA +P +DAPA
Sbjct: 63 TPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPAETPSDAPAASSES 122
Query: 122 ----------------------GSPDSSPATSPSPASDSPADSPADAPTADSPDAASPEA 181
SPDSSP+ SPSPA+DSPA SPAD + SP AASP++
Sbjct: 123 SPSPSASAPTSPSEAPASNSPDSSPDSSPSVSPSPATDSPAASPAD---SGSP-AASPDS 182
Query: 182 DVSSPPS--PGSAESPAADGPDAAADGPDAAADGPASDSPADAPGGAADSGASDLKFAAA 188
D SSPPS P +A+SP ADGP + ADGP + ADGP SDSPAD+P G ADSG S LK +A
Sbjct: 183 DSSSPPSPTPDAADSPVADGP-SEADGP-SEADGPISDSPADSPDGDADSGTSALKLTSA 242
BLAST of MS009782 vs. ExPASy TrEMBL
Match:
A0A5A7VIK3 (Mucin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11681G00010 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 3.5e-26
Identity = 121/200 (60.50%), Postives = 144/200 (72.00%), Query Frame = 0
Query: 1 MARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNSSS---SPSSSL-AASPKAES 60
MA Q ++VFALIF AAVAGVFAEAP SPS +P+PKAS S S SPSSS AASPKA S
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAASPKASS 60
Query: 61 ESDSPSSSPAASPKSNSTDA-----PAGSPDSSPATSPSPASDSPADSP-ADAP---TAD 120
E+ SPS + A+SP S+S+DA P SP SSP+ SPSPA+DSPADSP AD+P AD
Sbjct: 61 EATSPSPA-ASSPSSSSSDAPTSDSPTSSPKSSPSVSPSPATDSPADSPAADSPADNVAD 120
Query: 121 SPDAASPEADVSSPPSPGSAESPAADGPDAAADGPDAAADGPASDSPADAPGGAADSGAS 180
+P AASP++DVSSPPSP +A++P AADGP AADGP +DSPAD+P G S +
Sbjct: 121 TPTAASPDSDVSSPPSPDAADAP------TAADGP-MAADGPTADSPADSPAGDDKSSGT 180
Query: 181 DLKFAAAAVGGVAVAGLFAF 188
DLK +A VGGV AG +AF
Sbjct: 181 DLKLTSAVVGGVIAAGFYAF 192
BLAST of MS009782 vs. ExPASy TrEMBL
Match:
A0A1S3BND1 (mucin-1 OS=Cucumis melo OX=3656 GN=LOC103491750 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 3.5e-26
Identity = 121/200 (60.50%), Postives = 144/200 (72.00%), Query Frame = 0
Query: 1 MARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNSSS---SPSSSL-AASPKAES 60
MA Q ++VFALIF AAVAGVFAEAP SPS +P+PKAS S S SPSSS AASPKA S
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAASPKASS 60
Query: 61 ESDSPSSSPAASPKSNSTDA-----PAGSPDSSPATSPSPASDSPADSP-ADAP---TAD 120
E+ SPS + A+SP S+S+DA P SP SSP+ SPSPA+DSPADSP AD+P AD
Sbjct: 61 ETTSPSPA-ASSPSSSSSDAPTSDSPTSSPKSSPSVSPSPATDSPADSPAADSPADNVAD 120
Query: 121 SPDAASPEADVSSPPSPGSAESPAADGPDAAADGPDAAADGPASDSPADAPGGAADSGAS 180
+P AASP++DVSSPPSP +A++P AADGP AADGP +DSPAD+P G S +
Sbjct: 121 TPTAASPDSDVSSPPSPDAADAP------TAADGP-IAADGPTADSPADSPAGDDKSSGT 180
Query: 181 DLKFAAAAVGGVAVAGLFAF 188
DLK +A VGGV AG +AF
Sbjct: 181 DLKLTSAVVGGVIAAGFYAF 192
BLAST of MS009782 vs. ExPASy TrEMBL
Match:
A0A6J1F318 (mucin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441724 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 4.1e-19
Identity = 117/239 (48.95%), Postives = 146/239 (61.09%), Query Frame = 0
Query: 2 ARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNS---SSSPSSSLAASP---KAE 61
++ F++VFALIF AAVAG FAEAP ++PS++PAPK++ S +SSPSSS A+SP A+
Sbjct: 3 SQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTPAD 62
Query: 62 SESDSPSSSPAASPKSNSTDAPA------------------------------------- 121
+ +D+P+ +PA +P D PA
Sbjct: 63 TPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPASNS 122
Query: 122 --GSPDSSPATSPSPASDSPADSPADAPTADSPDAASPEADVSSPPS--PGSAESPAADG 181
SPDSSP+ SPSPA+DSPA SPAD + SP AASP++D SSPPS P +A+SP ADG
Sbjct: 123 PDSSPDSSPSVSPSPATDSPAASPAD---SGSP-AASPDSDSSSPPSPTPDAADSPVADG 182
Query: 182 PDAA-----ADGPDAAADGPASDSPADAPGGAADSGASDLKFAAAAV-GGVAVAGLFAF 188
P A ADGP + ADG SDSPAD+P G ADSG S LK +AAV G VAVAGLFAF
Sbjct: 183 PSEADGPSEADGP-SEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVAVAGLFAF 236
BLAST of MS009782 vs. ExPASy TrEMBL
Match:
A0A0A0LDP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G593190 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 7.0e-19
Identity = 113/200 (56.50%), Postives = 136/200 (68.00%), Query Frame = 0
Query: 1 MARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNSSS---SPSSSL-AASPKAES 60
MA Q ++VFALIF AAVAGVFAEAP SPS +P+PKAS S S SPSSS A SPKA
Sbjct: 1 MASQTVLVFALIFLAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAGSPKASP 60
Query: 61 ESDSPS---SSPAASPKSNSTDAPAGSPDSSPATSPSPASDSPADSPA-DAPTADS---- 120
E+ SPS SSP++S + ++++P SP SSP+ SPSPA+DSP+DSPA D+P ADS
Sbjct: 61 ETTSPSPAASSPSSSSDAPTSNSPTSSPTSSPSVSPSPATDSPSDSPASDSPVADSPADS 120
Query: 121 ----PDAASPEADVSSPPSPGSAESPAADGPDAAADGPDAAADGP-ASDSPADAPGGAAD 180
P AASP++DVSSPPSP +A++P ADGP AAADGP AADGP A+D P A G A
Sbjct: 121 PADTPTAASPDSDVSSPPSPDAADAPTADGP-AAADGP-TAADGPTAADGPTAADGPTAA 180
Query: 181 SGASDLKFAAAAVGGVAVAG 184
G + AA G A G
Sbjct: 181 DGPTAADGPTAADGPTAADG 198
BLAST of MS009782 vs. ExPASy TrEMBL
Match:
A0A6J1J779 (mucin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481994 PE=4 SV=1)
HSP 1 Score: 93.6 bits (231), Expect = 9.4e-16
Identity = 115/257 (44.75%), Postives = 139/257 (54.09%), Query Frame = 0
Query: 1 MARQFLVVFALIFAAAVAGVFAEAPASSPSDAPAPKASNS---SSSPSSSLAASP----- 60
MA Q ++VFALIF AAVAG FAEAP +SPS++PAPK++ S +SSPSSS A +P
Sbjct: 1 MASQSVLVFALIFVAAVAGAFAEAPTASPSESPAPKSAPSDSEASSPSSSPADTPADTPA 60
Query: 61 --KAESESDSPSSSPAASPKSNSTDAPA-------------------------------- 120
AE+ +D+P+ +PA +P D PA
Sbjct: 61 DTPAETPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPAASSE 120
Query: 121 -----------------------GSPDSSPATSPSPASDSPADSPADAPTADSPDAASPE 180
SPDSSP+ SPSP +DSPA SPAD + SP AASP+
Sbjct: 121 SSPSPAASAPTSPSEAPASNSPDSSPDSSPSVSPSPDTDSPAASPAD---SGSP-AASPD 180
Query: 181 ADVSSPPS--PGSAESPAADGPDAAADGPDAAADGPASDSPADAPGGAADSGASDLKFAA 188
+D SSPPS P +A+SP ADGP + DGP SDSPADAP G ADSG S LK +
Sbjct: 181 SDSSSPPSPTPDAADSPVADGP--------SEVDGPTSDSPADAPDGDADSGTSSLKLTS 240
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0066977.1 | 7.1e-26 | 60.50 | mucin-1 [Cucumis melo var. makuwa] >TYK20871.1 mucin-1 [Cucumis melo var. makuwa... | [more] |
XP_008450043.1 | 7.1e-26 | 60.50 | PREDICTED: mucin-1 [Cucumis melo] | [more] |
XP_031737954.1 | 5.7e-23 | 58.57 | classical arabinogalactan protein 11 [Cucumis sativus] >KAE8650788.1 hypothetica... | [more] |
XP_022934589.1 | 8.5e-19 | 48.95 | mucin-1-like [Cucurbita moschata] | [more] |
XP_023529000.1 | 4.2e-18 | 46.88 | classical arabinogalactan protein 6-like [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VIK3 | 3.5e-26 | 60.50 | Mucin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11681G00010 PE=4... | [more] |
A0A1S3BND1 | 3.5e-26 | 60.50 | mucin-1 OS=Cucumis melo OX=3656 GN=LOC103491750 PE=4 SV=1 | [more] |
A0A6J1F318 | 4.1e-19 | 48.95 | mucin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441724 PE=4 SV=1 | [more] |
A0A0A0LDP4 | 7.0e-19 | 56.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G593190 PE=4 SV=1 | [more] |
A0A6J1J779 | 9.4e-16 | 44.75 | mucin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481994 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |